KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:14:00 2014 Check: 00 .. Name: ENSP00000224605/1-478 Len: 540 Check: 5489 Weight: 1.00 Name: ENSBTAP00000001351/1-478 Len: 540 Check: 4907 Weight: 1.00 Name: bmy_18061T0/1-477 Len: 540 Check: 4637 Weight: 1.00 Name: BACU007616/1-433 Len: 540 Check: 1731 Weight: 1.00 Name: ENSTTRP00000012738/1-476 Len: 540 Check: 8249 Weight: 1.00 // 1 50 ENSP00000224605/1-478 MAHVPARTSP GPGPQLLLLL LPLFLLLLRD VAGSHRAPAW SALPAAADGL ENSBTAP00000001351/1-478 MARGPARTSL GPGSQQLPLL SLLLLLLLRD ADGSHTAAAR PPPPAAADGL bmy_18061T0/1-477 MARGPARTSP GPGPQVLPLL -PLLLLLLQD AGGSHTAPAR SAPPAAADGL BACU007616/1-433 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012738/1-476 MTRGPARTGP GPGSQLXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 51 100 ENSP00000224605/1-478 QGDRDLQRHP GDAAATLGPS AQDMVAVHMH RLYEKYSRQG ARPGGGNTVR ENSBTAP00000001351/1-478 AGDKNPQRSP GDVAAAQSPG AQDMVAVHML RLYEKYSRRG ARPGGGNTVR bmy_18061T0/1-477 AGYKNPQRSP GDAAAALGPG TQDMVAVHML RLYEKYSRRG ARPGGGNTVR BACU007616/1-433 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012738/1-476 XXYKNPQRSP GDAAAALG-G TQDMVAVHML R-YEKYSRRG ARPGGGNTVR 101 150 ENSP00000224605/1-478 SFRARLEVVD QKAVYFFNLT SMQDSEMILT ATFHFYSEPP RWPRALEVLC ENSBTAP00000001351/1-478 SFRARLEVVN QKAVYFFNLT SMQDSEMILT ATFHFYSE-P QWPPAREVPC bmy_18061T0/1-477 SFRARLEVVN QETVYFFNLT SMQDSEMILM ATFHFYSE-P QWPRAREAPC BACU007616/1-433 ------EVVN QKTVYFFNLT SMQDSEMILM ATFHFYSE-P RWPRAREAPC ENSTTRP00000012738/1-476 SFRARLEVVN QKTVYFFNLT SMQDSEMILM ATFHFYSE-P RWPRAREAPC 151 200 ENSP00000224605/1-478 KPRAKNASGR PLPLGPPTRQ HLLFRSLSQN TATQ------ ---------- ENSBTAP00000001351/1-478 KQRAKNASCR LLPPGPPARQ HLLFRSLSQN TATQ------ ---------- bmy_18061T0/1-477 KQRAKNASCH LLPPGPPARQ HLLFRSLSQN MATQ------ ---------- BACU007616/1-433 KQWAKNASCH LLPPGPPARQ HLLXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000012738/1-476 KQRAKNASCR LLPPGPPARQ HLLFRSLSQN MATQ------ ---------- 201 250 ENSP00000224605/1-478 ---------- ---------- ---------- ---------- -----GLLRG ENSBTAP00000001351/1-478 ---------- ---------- ---------- ---------- -----GLLRG bmy_18061T0/1-477 ---------- ---------- ---------- ---------- -----GLLRG BACU007616/1-433 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXGGRLRG ENSTTRP00000012738/1-476 ---------- ---------- ---------- ---------- -----GLLRG 251 300 ENSP00000224605/1-478 AMALAPPPRG LWQAKDISPI VKAARRDGEL LLSAQLDSEE RDPGVPRPSP ENSBTAP00000001351/1-478 AMALPPPPRG LWQAKDISLI VKAARRDGEL LLSAQLDSGE KDTGVPRLGP bmy_18061T0/1-477 AMALLPPPRG LWRAKDISPI VKAARRDGEL LLSAQLDSGE EDPGVPRPGP BACU007616/1-433 AVPLLPPPRG LWRAKDISPI VKAARRDGEL LLSAQLDSGE EDPGVPRPGP ENSTTRP00000012738/1-476 AMALLPPPRG LWRAKDISPI IKAARRDGEL LLSAQLDSGE EDPGVPRPGP 301 350 ENSP00000224605/1-478 YAPYILVYAN DLAISEPNSV AVTLQRYDPF PAGDPEPRAA PNNSADPRVR ENSBTAP00000001351/1-478 HAPYILIYAN DLAISEPNSV AVTLQRYDPF QAGDPEPGAA PNSSADPRVR bmy_18061T0/1-477 HAPYILIYAN DLAISEPNSV AVTLQRYDPF QAGDPEPGAA PNSSADPRVR BACU007616/1-433 HAPYILIYAD DLAISEPNSV AVTLQRYDPF QAGDPEPGAA PNSSADPRVR ENSTTRP00000012738/1-476 HAPYILIYAN DLAISEPNSV AVTLQRYDPF QAGDQEPGAA PNSSADPRVR 351 400 ENSP00000224605/1-478 RAAQATGPLQ DNELPGLDER PPRA-HAQHF HKHQLWPSPF RALKPRPGRK ENSBTAP00000001351/1-478 RATQATGPLQ NNELPGLDER PAQAPHAQHY HKHELWPNPL RALKPRPGRK bmy_18061T0/1-477 RATQATGPLQ NNELPGLDER PAHAPHAQRY HKHELWPSPF RALKPRPGRK BACU007616/1-433 RATQATGPLQ NNELPGLDER PAHAPHAQHY HKHELWPSPF RALKPRPGRK ENSTTRP00000012738/1-476 RATQAMGPLQ NNELPGLDER PAHAPHAQHY HKHELWPSPF RALKPRPGRK 401 450 ENSP00000224605/1-478 DRRKKGQEVF MAASQVLDFD EKTMQKARRK QWDEPRVCSR RYLKVDFADI ENSBTAP00000001351/1-478 DRRKKGQDVF MASSQVLDFD EKTMQKARKK QWDEPRVCSR RYLKVDFADI bmy_18061T0/1-477 DRRRKGQDVF MASSQVLDFD EKTMQKARRK QWDEPRVCSR RYLKVDFADI BACU007616/1-433 DRRKKGQDVF MASSQVLDFD EKTMQKARRK QWDEPRVCSR RYLKVDFADI ENSTTRP00000012738/1-476 DRRKKGQDVF MASSQVLDFD EKTMQKARRK QWDEPRVCSR RYLKVDFADI 451 500 ENSP00000224605/1-478 GWNEWIISPK SFDAYYCAGA CEFPMPKIVR PSNHATIQSI VRAVGIIPGI ENSBTAP00000001351/1-478 GWNEWIISPK SFDAYYCSGA CEFPMPKMVR PSNHATIQSI VRAVGIVPGI bmy_18061T0/1-477 GWNEWIVSPK SFDAYYCSGA CEFPMPKIVR PSNHATIQSI VRAVGIIPGI BACU007616/1-433 GWNEWIISPK SFDAYYCSGA CEFPMPKIVR PSNHATIQSI VRAVGIVPGI ENSTTRP00000012738/1-476 GWNEWIISPK SFDAYYCSGA CEFPMPKIVR PSNHATIQSI VRAVGIVPGI 501 550 ENSP00000224605/1-478 PEPCCVPDKM NSLGVLFLDE NRNVVLKVYP NMSVDTCACR ENSBTAP00000001351/1-478 PEPCCVPDKM SSLGVLFLDE NRNVVLKVYP NMSVETCACR bmy_18061T0/1-477 PEPCCVPDKM NSLGVLFLDE NRNVVLKVYP NMSVETCACR BACU007616/1-433 PEPCCVPDKM NSLGVLFLDE NRNVVLKVYP NMSVETCACR ENSTTRP00000012738/1-476 PEPCCVPDKM NSLGVLFLDE NRNVVLKVYP NMSVETCACR