KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:14:01 2014 Check: 00 .. Name: ENSP00000440994/1-853 Len: 868 Check: 2358 Weight: 1.00 Name: ENSBTAP00000001353/1-858 Len: 868 Check: 4256 Weight: 1.00 Name: ENSTTRP00000010524/1-796 Len: 868 Check: 8584 Weight: 1.00 Name: bmy_12541T0/1-864 Len: 868 Check: 7186 Weight: 1.00 Name: BACU003098/1-753 Len: 868 Check: 8097 Weight: 1.00 // 1 50 ENSP00000440994/1-853 MSEKVDWLQS QNGVCKVDVY SPGDNQAQDW KM-------- -DTSTDPVRV ENSBTAP00000001353/1-858 MSDRVDWLQS QNGVCKVDVY SPGDSQPQDW KMSDESLSIF KEASHDPIRV ENSTTRP00000010524/1-796 MSDRVDWLQS QTGVCKVDVY SPGDDLPQDW KM-------- --XXXXXXXX bmy_12541T0/1-864 MSDRVDWLQS QTGVCKVDVY SPRDGQPQDW KMLDESLSIF KEASHDPIRV BACU003098/1-753 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000440994/1-853 LSWLRRDLEK STAEFQDVRF KPGE-SFGGE TSNSGDPHKG FSVDYYNTTT ENSBTAP00000001353/1-858 LSWLRRDLEK STAGFQDIRF KPGESSLGRE MVSSGDPRKG FCVDYYNTTS ENSTTRP00000010524/1-796 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_12541T0/1-864 LSWLRRDLEK STAGFQDVRF KPGEASFGRE MVNSGDPRKR FCVDYYNTTT BACU003098/1-753 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000440994/1-853 KGTPERLHFE MTHKEIPCQG PRAQLGNGSS VDEVSFYANR LTNLVIAMAR ENSBTAP00000001353/1-858 RGSPGRLHFE MSHRENPHQG PTC---NGSS VDEVSFYANR LTNLVIAMAR ENSTTRP00000010524/1-796 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XTNLVIAMA- bmy_12541T0/1-864 KGSPGRLHFE MSHRENPYQG PSAHVGNRSS VDEVSFYANR LTNLVIAMAR BACU003098/1-753 ---------- MSHRENPCQG PSAHVANRSS VDEVSFYASR LTNLVIAMAR 151 200 ENSP00000440994/1-853 KEINEKIDGS ENKCVYQSLY MGNEPTPTKS LSKIASELVN ETVSACSRNA ENSBTAP00000001353/1-858 KEINEKIDGS ENRCVHQSVY MGDEPPPNKS LSKVASELVN ETVTACSKNT ENSTTRP00000010524/1-796 KEI-ERIDGS ESKCIHQSVY VGD-AAPKKS -SKVASELVN ETVSACSRNS bmy_12541T0/1-864 KEINERIDGS ENKCIHQSVY MGDKPAPNKS LSKVASELVN ETVSACSKNS BACU003098/1-753 KEINERIDGS ENKCIHQSVY MGDKPAPNKS LSKVASELVN ETVSACSKNS 201 250 ENSP00000440994/1-853 APDKAPGSGD RVSGSSQSPP NLKYKSTLKI KESTKERQGP DDKPPSKKSF ENSBTAP00000001353/1-858 PSDKAPGSGD RASGTLQSPP NLKYKSTLKI KESNKGGRGP DDRPSSKKSF ENSTTRP00000010524/1-796 TSDKAPGSYD RASGTSQSPV NVKYKSALKI KDSTKESRGP DDKPSSKKSF bmy_12541T0/1-864 TSDKAPGSCD GASGTLQSPL NLKYKSALKI KDSTKESRSP DDKPSSKKSF BACU003098/1-753 TSDKPPGSCD RASGSLQSPL NLKYKSALKI KDSTKESRSP DDKPSSKKSF 251 300 ENSP00000440994/1-853 FYKEVFESRN GDYAREGGRF FPRERKRFRG QERPDDFTAS VSEGIMTYAN ENSBTAP00000001353/1-858 FYKEVFESRN AGDAKEGGRT LPAERKMFRG YERPDDFTAS ISQGIMTYAN ENSTTRP00000010524/1-796 FYKEVFESCN ASDATEGRRS LPAEGEMLRE QEKPNDFTAS VSQGIITYAN bmy_12541T0/1-864 FYKEVFESCN ASNATEGGRS LPAEGEMFRE QERPDDFTAS VSQGIITYAN BACU003098/1-753 FYKEVFESCN ASDATEDRRS LPAEGEMFRE QERPDDFTAS VSQGIVTYAN 301 350 ENSP00000440994/1-853 SVVSDMMVSI MKTLKIQVKD TTIATILLKK VLLKHAKEVV SDLIDSFLRN ENSBTAP00000001353/1-858 SVVSDMMVSI MKTLKIQVKD TTIATIVLKK VLIKHAKEVV SDLIDSFMKN ENSTTRP00000010524/1-796 SVVSDMMVSI MKTLKIQVKD TTIATILLKK VLIKHAEEVV SDLIDSFMKN bmy_12541T0/1-864 SVVSDMMVSI MKTLRIQVKD TTVATVLLKK VLIRHAKEVV SDLIDSFMKN BACU003098/1-753 SVVSDMMVSI MKTLRIQVKD TTVATVLLKK VLIRHAKEVV SDLIDSFMKN 351 400 ENSP00000440994/1-853 LHSVTGTLMT DTQFVSAVKR TVFSHGSQKA TDIMDAMLRK LYNVMFAKKV ENSBTAP00000001353/1-858 LHNVTGTLMT DTDFVSAVKR SFFSHGSQKA TDIMDAMLGK LYSVIFAKKP ENSTTRP00000010524/1-796 LHDVTGALMT DTDFVSAVKR SLFVHGSQKA TDIMDAMLSK LYSVIFAKKP bmy_12541T0/1-864 LHDVTGALMT DTDFVSAVKR SLFSHGSQKA ADIMDAMLGK LYSVIFAKKP BACU003098/1-753 LHDVTGALMT DTDFVSAVKR SLFSHGSQKA ADIMDAMLGK LYSVIFAKKP 401 450 ENSP00000440994/1-853 PEHVRKAQDK AESYSLISMK GMGDPKNRNV NFA-MKSETK LREKMYSE-P ENSBTAP00000001353/1-858 PETVRKTKDK SESYSLVSMK GMGDPKHRNV NFASMKSEGK VRERVCTPTP ENSTTRP00000010524/1-796 PETVRETKDK SESYSLMSVK GTSDPKNRNV SFASMKSEGK LREKIGSPAP bmy_12541T0/1-864 PETVGKTKDK SESYSLMSMK GISDPKNRNI NFASMKSEGK LREKICPPAP BACU003098/1-753 PETVRKTKDK SESYSLMSMK GISDPKNRNL NFASMKSEGK LREKICPPAP 451 500 ENSP00000440994/1-853 KSE-EETCAK TLGEHIIKEG LTLWHKTQQK ECKSLGFQHA AFEAPNTQRK ENSBTAP00000001353/1-858 KP--EKSCVE TLGEHIIKEG LTLWHNSQQK EGISACLQGS PFVTPKRQYK ENSTTRP00000010524/1-796 KPEKEKTCVE TLGEHIIQEG LSLWHKNQQK EGKSPDLQCA PLAASNKQHK bmy_12541T0/1-864 KPEKEKTCVE TLGEHIIKEG LSLWHKNQQI EGKSPGFQCA PFVASNKQYK BACU003098/1-753 KPEKEKTCVE TLGEHIIKEG LSLWHKNQQI EGKSPGFQCA PFVASNKQYK 501 550 ENSP00000440994/1-853 PASDISFEYP EDIGNLSLPP YPPEKPENFM YDSDSWAEDL IVSALLLIQY ENSBTAP00000001353/1-858 PVPDFPLGFP FDPCNFSLPM QCPEKPENFM CDSDSWAKDL LVSALLLIQY ENSTTRP00000010524/1-796 PAPDSPSGVP LDPSNLSPST HHPEKLENFM HDSESWARXX XXXXXXXXXX bmy_12541T0/1-864 PAPDFPLGVP FEPCNLSPSV HHPEKPENVM YDSDSWAKDL IVSALLLIQY BACU003098/1-753 PAPDFPLGVP LDPCNVSPSV HHPEQLENVM YDSDSWAKDL IVSALLLIQY 551 600 ENSP00000440994/1-853 HLAQGGRRDA RSFVEAAGTT NFPANEPPVA PDESCLKSAP IVGDQEQAEK ENSBTAP00000001353/1-858 HLAQGGNMDA QSFLEAAGTS NLYPTKSPAV SHESSLRSPQ VGADPEEVEK ENSTTRP00000010524/1-796 XLAQGGSMDA QSLVKAAGGT NLQASKSPAI SDESGIRSPH MGVDQEAAEK bmy_12541T0/1-864 HLAQGGSMDA QSFLKAAGST SLQANKPPAV SDESGLRSPH MGLDQEEAEK BACU003098/1-753 HLAQGGSMGA QSFLKAAGST NLQANKSPAV SDESGLRSPH MGVDQEEAEK 601 650 ENSP00000440994/1-853 KDLRSVFFNF IRNLLSETIF KRDQSPEPKV PEQPVKEDRK -LCERPLASS ENSBTAP00000001353/1-858 KDLMSVFFNF IRNLLSETIF KSDHSCDPK- ---ATKEDNS PQCERPVTPS ENSTTRP00000010524/1-796 KDLMSVFFNF IRNLLGETIF KSDRSSEPK- ---PTKERQS --CERPVSPS bmy_12541T0/1-864 KGLMSAFFNF IRNLLGETIF KSDRSSELK- ---PTKEEDS PQCERPVTPS BACU003098/1-753 KGLMSAFFNF IRNLLGETIF KSDRISEPK- ---PTKEEDS PQCERPVTPS 651 700 ENSP00000440994/1-853 PPRLYEDDET PGALSGLTKM AVSQIDGHMS GQMVEHLMNS VMKLCVIIAK ENSBTAP00000001353/1-858 PAKLNECDET GGAFAGLTKM VANKLDGHMN GQMVDHLMDS VMKLCLIIAK ENSTTRP00000010524/1-796 PIKLNEGDEA GGTFAGLTKK VANQLDDHMN KQMVEHLMDS VMKLCLIIAK bmy_12541T0/1-864 PIKLNEGDEA GGTFAGLTKK VANQLDDHMN GQMVEHLMDS VMKLCLIIAK BACU003098/1-753 PIKLNEGDEA GGTFAGLTKK AANPLDDHMN GQMVEHLMDS VMKLCLIIAK 701 750 ENSP00000440994/1-853 SCDASLAELG DDKSGDASRL TSAFPDSLYE CLPAKGTGSA EAVLQNAYQA ENSBTAP00000001353/1-858 SCDSPLAELG DDKSGDASRP TSAFPESLYE CLSTKGTGTA ETFLQNAYQA ENSTTRP00000010524/1-796 SCDSPLAEVE SNKSGDTNRP TSSSPDSLHE CLSTKGTGAA EILLKNAYET bmy_12541T0/1-864 SCDSPLAQLG DDKSGDTNWP TSASPDSFHE CLPTKGTGTA EVLLKNAYEA BACU003098/1-753 SCDSPLAELG DDKPGDTNWP TSASPDSLRE CLPTKGTGTA EVLLKNAYEA 751 800 ENSP00000440994/1-853 IHNEMRGTSG QPPEGCAAPT VIVSNHNLTD TVQNKQLQAV LQWVAASELN ENSBTAP00000001353/1-858 IHNELRSLSA QPPEGCTAPK VIVSNHNLTD TVQNKQLQAV LQWVAASELN ENSTTRP00000010524/1-796 IYNELRGISA PLPEGSAAPK VIVSSHNLAD TVQNKQLQAV LQWVAASELN bmy_12541T0/1-864 IYNELRGISG QLPEGCAAPK VIVSSRNLTD TVQNKQLQAV LQWVAASELN BACU003098/1-753 IYNELRGLSG QLPEGCAAPK VIVSSRNLTD TLQNKQLQAV LQWVAASELN 801 850 ENSP00000440994/1-853 VPILYFAGDD EGIQEKLLQL SAAAVDKGCS VGEVLQSVLR YEKERQLNEA ENSBTAP00000001353/1-858 VPILYFAGDD EGIQEKLLQL SAAAVEKGRS VGEVLQSVLR YEKERQLDEA ENSTTRP00000010524/1-796 VPVLYFAGYD EGIQEK---- ---------- ---------- ---------- bmy_12541T0/1-864 VPVVYIAGDD EGIQEKDLAS RPVSAEQLST SAFSVAADSR CQQRTSIPEF BACU003098/1-753 VPVLYIAGDD EGIQEKLLQL SAAAVEKGRS VGEVLQSVLR YEKERQLDEA 851 900 ENSP00000440994/1-853 VGNVTPLQLL DWLMVNL- ENSBTAP00000001353/1-858 VGNVTRLQLL DWLMVNL- ENSTTRP00000010524/1-796 ---------- -------- bmy_12541T0/1-864 CCQLCAFLAG GPGTSHRF BACU003098/1-753 VGNVMRLQLL DWLLEKL-