KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:14:02 2014 Check: 00 .. Name: ENSP00000411409/1-904 Len: 940 Check: 7747 Weight: 1.00 Name: ENSBTAP00000001356/1-903 Len: 940 Check: 3597 Weight: 1.00 Name: ENSTTRP00000010813/1-832 Len: 940 Check: 4496 Weight: 1.00 Name: BACU009212/1-869 Len: 940 Check: 1796 Weight: 1.00 Name: bmy_02703T0/1-907 Len: 940 Check: 7901 Weight: 1.00 // 1 50 ENSP00000411409/1-904 MAAAGGAEGR RADMEAEAAA APEREGGSCV LCCGDLEATA LGRCDHPVCY ENSBTAP00000001356/1-903 AAAAAGPEGR LVSQEA-AAA APERGGGSCV LCCGDLEATA LGRCDHPVCY ENSTTRP00000010813/1-832 ---------- ---------- ---------- ---------- ---------- BACU009212/1-869 ---------- ---------- ---------- ----MVRLTS L------FCF bmy_02703T0/1-907 MAATAGPEGR RVALEA-AVA APERGGGSCV LCCGDLEATA LGRCDHPVCY 51 100 ENSP00000411409/1-904 RCSTKMRVLC EQRYCAVCRE ELRQVVFGKK LPAFATIPIH QLQHEKKYDI ENSBTAP00000001356/1-903 RCSTKMRVLC EQRYCAVCRE ELRQVVFGKT LPAFATIPLH QLQHEKKYDI ENSTTRP00000010813/1-832 ---------- ---------- ----VVFGKK LPTFATIPIH QLQHEKKYDI BACU009212/1-869 RF-------- ---------- ---QVVFGKK LPTFATIPIH QLQHEKKYDI bmy_02703T0/1-907 RCSTKMRVLC EQRYCAVCRE ELRQVVFGKK LPTFATIPTH QLQHEKKYDI 101 150 ENSP00000411409/1-904 YFADGKVYAL YRQLLQHECP RCPELPPFSL FGDLEQHMRR QHELFCCRLC ENSBTAP00000001356/1-903 YFMDGRVFAL YRQLLQHECP RCPERPPFSL FGDLEQHMRK QHELFCCKLC ENSTTRP00000010813/1-832 YFADGKVFAL YRQLLQHECP RCPELPPFGL FGDLEQHMRK QHELFCCKLC BACU009212/1-869 YFADGKVFAL YRQLLQHECP RCPELPPFGL FGDLEQHMRK QHELFCCKLC bmy_02703T0/1-907 YFADGKVFAL YRQLLQHECP RCPELPPFGL FGDLEQHMRK QHELFCCKLC 151 200 ENSP00000411409/1-904 LQHLQ----- ---------- -----IFTYE RKWYSRKDLA RHRMQGDPDD ENSBTAP00000001356/1-903 LRHLQ----- ---------- -----IFTHE RKWYSRKDLA RHRMQGDPDD ENSTTRP00000010813/1-832 LKHLK----- ---------- -----IFTYE RKWYSRKDLA RHRMQGDPDD BACU009212/1-869 LKHLKVNPTP RHLPGDRAFR EHLVEIFTYE RKWYSRKDLA RHRMQGDPDD bmy_02703T0/1-907 LKHLK----- ---------- -----IFTYE RKWYSRKDLA RHRMQGDPDD 201 250 ENSP00000411409/1-904 TSHRGHPLCK FCDERYLDND ELLKHLRRDH YFCHFCDSDG AQDYYSDYAY ENSBTAP00000001356/1-903 TSHRGHPLCK FCDERYLDND ELLKHLRRDH YFCHFCDADG AQDYYSDYAY ENSTTRP00000010813/1-832 TSHRGHPLCK FCDERYLDND ELLKHLRRDH YFCHFCDSDG AQDYYSDYAY BACU009212/1-869 TSHRGHPLCK FCDERYLDND ELLKHLRRDH YFCHFCDSDG AQDYYSDYAY bmy_02703T0/1-907 TSHRGHPLCK FCDERYLDND ELLKHLRRDH YFCHFCDSDG AQDYYSDYAY 251 300 ENSP00000411409/1-904 LREHFREKHF LCEEGRCSTE QFTHAFRTEI DLKAHRTACH SRSRAEARQN ENSBTAP00000001356/1-903 LREHFREKHF LCEEGRCSTE QFTHAFRTEI DLKAHRTACH SRSRAEARQN ENSTTRP00000010813/1-832 LREHFREKHF LCEEGRCSTE QFTHAFRTEI DLKAHKMACH SRSRAEARQN BACU009212/1-869 LREHFREKHF LCEEGRCSTE QFTHAFRTEI DLKAHRTACH SRSRAEARQN bmy_02703T0/1-907 LREHFREKHF LCEEGRCSTE QFTHAFRTEI DLKAHRTACH SRSRAEARQN 301 350 ENSP00000411409/1-904 RHIDLQFSYA PRHSRRNEGV VGGEDYEEVD RYSRQGRVAR AGTRGAQQSR ENSBTAP00000001356/1-903 RQIDLQFSYA PRHSRRSEGV IGGEDYEELD RYNRQGRTGR ASGRGAQQSR ENSTTRP00000010813/1-832 RQIDLQFSYT PRHSRRNEGV VGGEDYEELD RYNRQGRTGR ASGRGAQQSR BACU009212/1-869 RQIDLQFSYT PRHLRRNEGV VGGEDYEELD RYNRQGRTGR ASGRGAQQSR bmy_02703T0/1-907 RQIDLQFSYT PRHSRRNEGV VGGEDYEELD RYNRQGRTGR ASGRGAQQSR 351 400 ENSP00000411409/1-904 RGSWRYKREE EDREVAAAVR ASVAA----- QQQEEARRSE DQEEGGRPKK ENSBTAP00000001356/1-903 RGSWRYKREE EDREVAAAIR ASVAT--QQQ QQQQETRRSE DWEEGGRPKK ENSTTRP00000010813/1-832 RGSWRYKREE EDREVAAAIR ASVAA----- QQQQDTRRSE DQEEGSRPRK BACU009212/1-869 RGSWRYKREE EDRELAAAIR ASVAAQQQQQ QQQQDTRRNE DQEEGSRPRK bmy_02703T0/1-907 RGSWRYKREE EDREVAAAIR ASVAT-QQQQ QQQQDTRRSE DQEEGSRPRK 401 450 ENSP00000411409/1-904 EEAAARGPED PRGPRRSPRT QGEGPGPKET STNGPVSQEA FSVTGPAAPG ENSBTAP00000001356/1-903 EEAGLRGPEE ARGPRRPART PGEGPGPKEA STNGPVSQEA FSITGPAAGA ENSTTRP00000010813/1-832 EEAGARGPEE PRGPWRPPRT QGEGPGSKEA SINGPVSQEA LPATGSAAGA BACU009212/1-869 EEAGARGPEE PRGPRRPPRT QGEGPGSKEA SINGPVSQEA LPATGLAAAA bmy_02703T0/1-907 EEAGARGPEE PRGPRRPPRT QGEGPGSKEA SINGPVSQEA LPATGSAAGA 451 500 ENSP00000411409/1-904 CVGVPGALPP PSPKLKDEDF PSLSASTSSS CSTAATPGPV GLALPYAIPA ENSBTAP00000001356/1-903 T--LPNTLPP PTSKLKDEDF PSLCASSSSS SSVAAAPGPV GLALAYPVPA ENSTTRP00000010813/1-832 T--FPSALPP PTSKLKDEDF PSLCASTSSP CSAAASLGPV GLALAYSVPA BACU009212/1-869 T--FPSALPP PTSKLKDEDF PSLCASTSSP CSAAAALGPM GLALAYSVPA bmy_02703T0/1-907 T--FPSALPP PTSKLKDEDF PSLCASTSSP CSAAAALGPV GLALAYSVPA 501 550 ENSP00000411409/1-904 RGRSAFQEED FPALVSSVPK PGTAPTSLVS AWNSSSSSKK VAQPPLSAQA ENSBTAP00000001356/1-903 RGRTTFQEED FPALVPSASK PSSAPTSLIS AWN-SGASKK VAHPAPGSQS ENSTTRP00000010813/1-832 RGRSTFQEED FPALVSSASK PSTAPTSLIS AWN-SSGSKK VAHPTPGAQS BACU009212/1-869 RGRSTFQEED FPALVSSASK PSTAPTSLIS AWN-SSGSKK VAHPAPGAQS bmy_02703T0/1-907 RGRSTFQEED FPALVSYASK PSTAPTSLIS AWN-SSGSKK VAHPAPGAQS 551 600 ENSP00000411409/1-904 T-GSGQPTRK AGKGSRGGRK GGPPFT-QEE EEDGGPA--- LQELLSTRPT ENSBTAP00000001356/1-903 TSGGSQPPRK SGKGGKGGKK GGPPPT--EE AEEDGRAGLT AQELRSVPTT ENSTTRP00000010813/1-832 ASGGSQPPRK AGKGGKGGKK SGLPRA-EEE EEEDGPA--- SQEVRGVPTT BACU009212/1-869 ASGGSQPSRK AGKGGKGGKK SGLPRTEEEE EEEDGRSGLT TQELRSVSTT bmy_02703T0/1-907 ASGGSQPPRK AGKGGKGGKK SGLPRA-EEE EEEDGRSGLT TQELRSVPTT 601 650 ENSP00000411409/1-904 GSVSSTLGLA SIQP-SKVGK KKKVGSEKPG TTLPQ--PPP ATCPPGALQA ENSBTAP00000001356/1-903 VAVSSLLAGA TTHTFTKVGK KKKVGSEKSG AASPP--PTD KEGPPGAELA ENSTTRP00000010813/1-832 VAVSSLLAVA STQTFTKVGK KKKVGSEKSG ASSPPPLPPD KDGPPGAEQA BACU009212/1-869 VAVSSLLAVA STQTFTKVGK KKKVGSKKSG ASSPPPLPPD KDGPPVAEQA bmy_02703T0/1-907 VAVSSLLAVA STQTFTKVGK KKKVGSEKSG ASSPPPLPPD KDGPPGAEQA 651 700 ENSP00000411409/1-904 PEAPASRAEG PVAVVVNGHM EGPAPARSAP KEPPGLPRPL GSFPCPTPQE ENSBTAP00000001356/1-903 PTAPPGRAEG PAAVIVNGHS EGPAPVRSTP KEPPGLPRPL GPPPCPTPQE ENSTTRP00000010813/1-832 PAPPTGRAEG SAAVIINGHT EGLVPARSIP KEPPGLPRPL GPLTCPTPQE BACU009212/1-869 PAAPTGRAEG SAAVIVNGHT EGLVPARSAP KEPPGLPRPL GPLPCPTLQE bmy_02703T0/1-907 PAAPTGRAEG SAAVIVNGHT EGLVPARSAP KEPPGLPRPL GPLPCPTPQE 701 750 ENSP00000411409/1-904 DFPALGGPCP PRMPPPPGFS AVVLLKGTPP PPPPGLVPPI SKPPPGFSGL ENSBTAP00000001356/1-903 DFPALCGPCP PRMPPPPGFN AVVLLKGT-- PPPPGLAPPV SKPPPGFSGL ENSTTRP00000010813/1-832 DFPALCGXXX XXXXXXXXFN TVVLLKGAPP PPPPGLVPPV SKPPPGFSGL BACU009212/1-869 DFPALCGPCP PRMPPPPGFN TVVLLKGAPP PPPPGLVPPV SKPPPGFSGL bmy_02703T0/1-907 DFPALCGPCP PRMPPPPGFN TVVLLKGAPP PPPPGLVPPV SKPPPGFSGL 751 800 ENSP00000411409/1-904 LPSPHPACVP SPATTTTTKA PRLLPAPRAY LVPENFRERN LQLIQSIRDF ENSBTAP00000001356/1-903 PSSPHPACVP S--TTTTTKA PRPTPVPRAY LVPENFRERN LQLIQSIRDF ENSTTRP00000010813/1-832 LPSPHPACVP S--TTTTTKA PRPTPVPRAY LIPENFRERN LQLIQSIKDF BACU009212/1-869 LPSPHPACVP S--TTTTTKA P--TPVPRAY LVPENFRERN LQLIQSIKDF bmy_02703T0/1-907 LPSPNPACVP S--TTTTTKA P--TPVPRAY LVPENFRERN LQLIQSIKDF 801 850 ENSP00000411409/1-904 LQSDEARFSE FKSHSGEFRQ GLISAAQYYK SCRDLLGENF QKVFNELLVL ENSBTAP00000001356/1-903 LQSDDARFSK FKSYSGEFRQ GAISAAQYYK SCRDLLGENF EKIFNELLVL ENSTTRP00000010813/1-832 LQSDEACFSK FKSHSGQFRQ GVISAAQYYK SCRDLLGENF QKIFNELLVL BACU009212/1-869 LQSDEACFSK FKSHSGQFRQ GVISAAQYYK SCRDLLGENF QKIFNELLVL bmy_02703T0/1-907 LQSDEACFSK FKSHSGQFRQ GVISAAQYYK SCRDLLGENF QKIFNELLVL 851 900 ENSP00000411409/1-904 LPDTAKQQEL LSAHTDFCNR EKPLSTKSKK NKKSAWQATT QQAGLDCRVC ENSBTAP00000001356/1-903 LPDTAKQQEL LLAHTDFRGR EKPPGTKAKK NRKSAWQAST RQVGLDCCVC ENSTTRP00000010813/1-832 LPDTAKQQEL LSAHTGFRGR ERPPGTKAKK SKKSAWQAST QQAGLDCCVC BACU009212/1-869 LPDTAKQQEL LSAHTDFRGR ERPPSTKAKK NKKSAWQAST QQAGLDCCVC bmy_02703T0/1-907 LPDTAKQQEL LSAHTDFRGR ERPPGTKAKK NKKSAWQAST QQAGLDCCVC 901 950 ENSP00000411409/1-904 PTCQQVLAHG DASSHQALHA ARDDDFPSLQ AIARIIT--- ENSBTAP00000001356/1-903 PTCQQVLAHG DVGSHQALHA ARDDDFPSLQ ALTRILT--- ENSTTRP00000010813/1-832 PTCQQVLAHG DVNSHQALHA ARDDDFPSLQ AIARILTLRT BACU009212/1-869 PTCQQVLAHG DVNSHQPLHA ARDDDFPSLQ AIARILT--- bmy_02703T0/1-907 PTCQQVLAHG DVNSHQALHA ARDDDFPSLQ AIARILT---