KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:14:07 2014 Check: 00 .. Name: ENSP00000387211/1-541 Len: 1084 Check: 8985 Weight: 1.00 Name: ENSBTAP00000001371/1-538 Len: 1084 Check: 1767 Weight: 1.00 Name: BACU004067/1-1081 Len: 1084 Check: 8721 Weight: 1.00 Name: bmy_09502T0/1-513 Len: 1084 Check: 8747 Weight: 1.00 Name: ENSTTRP00000010580/1-538 Len: 1084 Check: 8286 Weight: 1.00 // 1 50 ENSP00000387211/1-541 ---------- ---------- ---------- ---------- --MNCR---- ENSBTAP00000001371/1-538 ---------- ---------- ---------- ---------- --MHCR---- BACU004067/1-1081 MQTSGKSSWS LENEALIVRC PRQEKSRYPV VWYYSKTNKR ITTQRRSRVV bmy_09502T0/1-513 ---------- ---------- ---------- ---------- --MHDR---- ENSTTRP00000010580/1-538 ---------- ---------- ---------- ---------- --MHRR---- 51 100 ENSP00000387211/1-541 ---------- ---------- ---------- ---------- -----ELP-- ENSBTAP00000001371/1-538 ---------- ---------- ---------- ---------- -----EIP-- BACU004067/1-1081 ASGERLKFLP AKVKDSGFYT CIIRSPTSNK TGYVNVTIYK KQPGCDIPDF bmy_09502T0/1-513 ---------- ---------- ---------- ---------- -----EIP-- ENSTTRP00000010580/1-538 ---------- ---------- ---------- ---------- -----EIP-- 101 150 ENSP00000387211/1-541 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001371/1-538 ---------- ---------- ---------- ---------- ---------- BACU004067/1-1081 LIYSTTSGSE KNSRIYCPTI DLYNWTAPVE WFKNCEVLQG SRYRAHKSFL bmy_09502T0/1-513 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010580/1-538 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000387211/1-541 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001371/1-538 ---------- ---------- ---------- ---------- ---------- BACU004067/1-1081 QIDNANSKDA GDYTCKFMHN ENGVNYTVTA TRAFTVIDKR SFSLLPVIIA bmy_09502T0/1-513 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010580/1-538 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000387211/1-541 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001371/1-538 ---------- ---------- ---------- ---------- ---------- BACU004067/1-1081 PPQNETKEVE IGKPADLRCS ACFGKGSQTM ADILWQVNRS NAENFGEARI bmy_09502T0/1-513 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010580/1-538 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000387211/1-541 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001371/1-538 ---------- ---------- ---------- ---------- ---------- BACU004067/1-1081 HVLREQDQSS RSELTCLNAV LRIVDVKEED LSLKYDCLAM NFRGLIMHTV bmy_09502T0/1-513 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010580/1-538 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000387211/1-541 ---------- ---------- ------LTLW VLIS------ ---------- ENSBTAP00000001371/1-538 ---------- ---------- ------LTVW VLMF------ ---------- BACU004067/1-1081 RLRRKNPTDQ QSTYYVLAGF SILFLLINVL VIILKAFWIE IILLWRDIAR bmy_09502T0/1-513 ---------- ---------- ------LTLL VLMF------ ---------- ENSTTRP00000010580/1-538 ---------- ---------- ------MTLL VLMF------ ---------- 351 400 ENSP00000387211/1-541 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001371/1-538 ---------- ---------- ---------- ---------- ---------- BACU004067/1-1081 PHKTRNDGKI YDAYVIYPRN CKNSPKGASS VEYFVHQILP DVLENKCGYD bmy_09502T0/1-513 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010580/1-538 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000387211/1-541 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001371/1-538 ---------- ---------- ---------- ---------- ---------- BACU004067/1-1081 LYIYGRDLLP GEDVATTVET SIQKSRRHIF ILTPEVTHSK EFTYEWEIAL bmy_09502T0/1-513 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010580/1-538 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000387211/1-541 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001371/1-538 ---------- ---------- ---------- ---------- ---------- BACU004067/1-1081 HNTLIQNDSK AILIEMEALC PPGGLQIEEL QDSLKHLVEV QGTIKWREDL bmy_09502T0/1-513 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010580/1-538 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000387211/1-541 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001371/1-538 ---------- ---------- ---------- ---------- ---------- BACU004067/1-1081 VAKKQSLNSK FWKHISFLWL PYLLHYACGS SPFWFRSFSP ASPSGVKGDS bmy_09502T0/1-513 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010580/1-538 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000387211/1-541 -------VST A-ESCTSRPH ITVVEGEPFY LKHCSCSLAH EIETTTKSWY ENSBTAP00000001371/1-538 -------IST SEETCTSRLH ITAVEGEPFY LKYCSSSPEH GKKTTTIKWY BACU004067/1-1081 RPLPSLGTPS EEETCTSRLH ITAVEGEPFY LKYCSSSSER ENKTATIKWY bmy_09502T0/1-513 -------IST SEETCTSRLH ITAVEGEPFY LKYCSSSSEH ENKTATIKWY ENSTTRP00000010580/1-538 -------IST S-ETCTSRLH ITAVEGEPFY LKYCSSSSEH ENKTTTIKWY 601 650 ENSP00000387211/1-541 KSSGSQEHVE LNPRSSSRIA LHDCVLEFWP VELNDTGSYF FQMKNYTQKW ENSBTAP00000001371/1-538 KNE-SHGPVD LSLRSSPRIL LRDYVLEFWP VELSDSGSYS FQMGNDTHDW BACU004067/1-1081 KNE-SHGPLE LSSSSSPRII LLDYVLEFWP VHWNDSGSYS IRMGNDTHDW bmy_09502T0/1-513 KNE-SHGPLE LSLSSSPRII LLDYVLEFWP VHLNDSGSYS IRMGNDTHDW ENSTTRP00000010580/1-538 KNE-SHGPLE LSSSSSPRII LLDYVLEFWP VHLNDSGSYS IRMGNDTHDW 651 700 ENSP00000387211/1-541 KLNVIRRNKH SCFTERQVTS KIVEVKKFFQ ITCENSYYQT LVNSTSLYKN ENSBTAP00000001371/1-538 KLNVIPRSPH SCFTEKLVMS KAVEVKKSLQ IPCEHNYYQQ LANRTVLYKN BACU004067/1-1081 KLNVIRRPKH SCFTEKQIMS KSVEVKKSLQ VACEHGYYQK LVNRTLLYKN bmy_09502T0/1-513 KLNVIRRPKH SCFTEKQIMS KSVEVKKSLQ VACEHGYYQK LVNRTLLYKN ENSTTRP00000010580/1-538 KLNVIRRPKH SCFTEKQVMS KSVEVKKSLQ IACEHSYYQK LVNRTLLYKN 701 750 ENSP00000387211/1-541 CKKLLLENNK NPTIKKNAEF EDQGYYSCVH FLHHNGKLFN ITKTFNITIV ENSBTAP00000001371/1-538 CEK--MENNQ NPFL-KNAEF KDQGYYTCVF FLHHNGKLFN VTKTFNITIV BACU004067/1-1081 CEK--IENNQ NPFLKKNAEF KDQGYYTCMF FLLHNGKLFN VTKTFNITIV bmy_09502T0/1-513 CEK--IENNQ NPFLKKNAEF KDQGYYTCMF FLLHNGKLFN VTKTFNITIV ENSTTRP00000010580/1-538 CEK--IENHQ NPFLKKNAEF KDQGYYTCMF FLLRNGKLFN VTKTFNITIV 751 800 ENSP00000387211/1-541 EDRSNIVPVL LGPKLNHVAV ELGKNVRLNC SALLNEEDVI YWMFGEENGS ENSBTAP00000001371/1-538 GDHSNIIPAL LGPKIEEVKV ELGKDIQLNC SALLNEKDII YWNTWRKNGK BACU004067/1-1081 GDNSNIIPAL LGPKLTHVKV ELGKEVQLNC SALLNEKDVI YWNIWKKNGK bmy_09502T0/1-513 GDNSNIIPAL LGPKLTHVKV ELGKEVQLNC SALLNEKDVI YWNIWKKNGK ENSTTRP00000010580/1-538 GDNSNIIPAL LGPKLTHVKV ELGKDVQLNC SALLNEKDVI YWNIWKKNGK 801 850 ENSP00000387211/1-541 DPNIHEEKEM RIMTPEGKWH ASKVLRIENI GESNLNVLYN CTVASTGGTD ENSBTAP00000001371/1-538 DPNVHEGEVT RIRTSEGKWL ASTILRIENV NTRNLNFSYN CTAVNEGGID BACU004067/1-1081 DPNVHEEEGT RIRTSEGKRL ASKILRIENV NENNLNFSYN CTAVSEGGID bmy_09502T0/1-513 DPNVHEEEGT RIRVMA---- -------EDA GEISLIFP-- IF-------- ENSTTRP00000010580/1-538 DPNVHEEEGT RIXXXXXXXX XXXXLRIETV NENNLNFSYN CTASSEGGID 851 900 ENSP00000387211/1-541 TKSFILVRKA DMADIPGHVF TRGMIIAVLI LVAVVCLVTV CVIYRVDLVL ENSBTAP00000001371/1-538 TKSFLLLLKE DMVDIPGHVF TRGMIVAVVI SVVVVCLVTM GVIYRVDLVL BACU004067/1-1081 TKSFILLKKE DPVDIPGHIF TRGMIVAVLI SVVVVCLVTV GAIYRVDLVL bmy_09502T0/1-513 ---FFFL--E DPVDIPGHIF TRGMIVTVLI SVVIVCLVTV GAIYRVDLVL ENSTTRP00000010580/1-538 TKSFILLKKE DPVDIPGHIF TRGMIVAVLI SVVIVCLVTV CAIYRVDLVL 901 950 ENSP00000387211/1-541 FYRHLTRRDE TLTDGKTYDA FVSYLKECRP ENGEEHTFAV EILPRVLEKH ENSBTAP00000001371/1-538 FYRHFMGRDE TLTDGKTYDA FVSYLKECQP EHGEEHAFAV ETLPRVLEKH BACU004067/1-1081 FYRHFLGRDE TLTDGKTYDA FVSYLKECRP ENGEEHTFAV EILPRVLEKH bmy_09502T0/1-513 FYRHFLGRDE TLTDGKTYDA FVSYLKECRP ENGEEHTFAV EILPRVLEKH ENSTTRP00000010580/1-538 FYRHFLGRDE TLTDGKTYDA FVSYLKECRP ENGEEHTFAV EILPRVLEKH 951 1000 ENSP00000387211/1-541 FGYKLCIFER DVVPGGAVVD EIHSLIEKSR RLIIVLSKSY MSNEVRYELE ENSBTAP00000001371/1-538 FGYKLCIFER DVVPGGAVVD EIHSLIEKSR RLIIVLSKSY MSSEVRYELE BACU004067/1-1081 FGYKLCIFER DVVPGRAVVD EIHSLIEKSR RLIIVLSKSY MSNEVRYELE bmy_09502T0/1-513 FGYKLCIFER DVVPGTAVVD EIHSLIEKSR RLIIVLSKSY MSNEVRYELE ENSTTRP00000010580/1-538 FGYKLCIFER DVVPGRAVVD EIHSLIEKSR RLIIVLSKSY MSNEVRYELE 1001 1050 ENSP00000387211/1-541 SGLHEALVER KIKIILIEFT PVTDFTFLPQ SLKLLKSHRV LKWKADKSLS ENSBTAP00000001371/1-538 SGLHEALVER KIKIILIEFT PVGDFRFLPQ SLKLLKSHRV LKWKADKSLS BACU004067/1-1081 SGLHEALVER KIKIILIEFT PVGDFTFLPQ SLKLLKSHRI LKWQADKSLS bmy_09502T0/1-513 SGLHEALVER KIKIILIEFT PVSDFTFLPQ SLKLLKSHRV LKWQADKSLS ENSTTRP00000010580/1-538 SGLHEALVER KIKIILIEFT PIGDFTFLPQ SLKLLKSHRV LKWQADKSLS 1051 1100 ENSP00000387211/1-541 YNSRFWKNLL YLMPAKTVKP GRDEPEVLPV LSES ENSBTAP00000001371/1-538 YNSRFWKNLL YLMPAKAVKP CRDESEASPV LLKS BACU004067/1-1081 YNSRFWKNLL YLMPAKAAKP CRDEAEVLPV FSQP bmy_09502T0/1-513 YNSRFWKDLL YLMPAKALKP CRDEAEVLPV FSQP ENSTTRP00000010580/1-538 YNSRFWKNLL YLMPAKAVKP YREEAEVLPV FSQP