KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:14:11 2014 Check: 00 .. Name: BACU001945/1-1021 Len: 1023 Check: 8098 Weight: 1.00 Name: ENSTTRP00000007748/1-784 Len: 1023 Check: 2232 Weight: 1.00 Name: ENSP00000352678/1-786 Len: 1023 Check: 3684 Weight: 1.00 Name: bmy_04419T0/1-730 Len: 1023 Check: 8192 Weight: 1.00 Name: ENSBTAP00000001386/1-535 Len: 1023 Check: 2837 Weight: 1.00 // 1 50 BACU001945/1-1021 MQVLLQYSRL VLALAFILIL GSSVQGSPVR RARYQWVRCN PDSNSANCID ENSTTRP00000007748/1-784 ----MSFPRC ALL------- ---------- -----WARLP PGR------- ENSP00000352678/1-786 ----MSFSRA LL-------- ---------- -----WARLP AGR------- bmy_04419T0/1-730 ----MSFPRC ALL------- ---------- -----WARLP PGR------- ENSBTAP00000001386/1-535 ----MSLPRC ALL------- ---------- -----WARLP AGR------- 51 100 BACU001945/1-1021 EKGPEFDLLP GESNRILSPR TDPFSMMKSR NLNDVFPLSE DFSGSGSGSG ENSTTRP00000007748/1-784 QPGPRAAICS A-----LRAH TGPF----PG TLGRVPAVAC ASSSASGGSK ENSP00000352678/1-786 QAGHRAAICS A-----LRPH FGPF----PG VLGQVSVLAT ASSSASGGSK bmy_04419T0/1-730 QPGPRAAVCS A-----LRAH TGPF----LG TLGRVPAVAC ASSSASGGSK ENSBTAP00000001386/1-535 QAGHRAAVCS A-----LRAH TGPF----PG ALGRVPAIAC ASSSASGGSK 101 150 BACU001945/1-1021 SGNGFLREIE QEYQPVTKLL SSQNSEAEGK KSFLGGFFGP ICEIDVVLND ENSTTRP00000007748/1-784 SPNTSL---- --FVPLT--V KPQGRSADGD VG-------- -AELTRPLDK ENSP00000352678/1-786 IPNTSL---- --FVPLT--V KPQGPSADGD VG-------- -AELTRPLDK bmy_04419T0/1-730 APNTSL---- --FVPLT--V KPQGRSADGD VG-------- -AELTRPLDK ENSBTAP00000001386/1-535 APNTSL---- --FVPLT--V KPQGPSADGD VG-------- -AELTRPLDK 151 200 BACU001945/1-1021 GETRKMAEMK TEDGKVEKHY LFYDGESVSG KVNIAFKQSG KRLEHQGIRI ENSTTRP00000007748/1-784 NEVKKI---- -----LDKFY ---------- ---------- KRKEIQKLSA ENSP00000352678/1-786 NEVKKV---- -----LDKFY ---------- ---------- KRKEIQKLGA bmy_04419T0/1-730 NEVKKI---- -----LDKFY ---------- ---------- KRKEIQKLSA ENSBTAP00000001386/1-535 NEVKKV---- -----LDKFY ---------- ---------- KRKEIQKLSA 201 250 BACU001945/1-1021 EFVGQIELFN DKSNTHEFVN LVKELALPGE LTQSRSYDFE FMQVEKPYES ENSTTRP00000007748/1-784 DYGLDARLFH -----QAFIS F--------- ----RNY--- ---------- ENSP00000352678/1-786 DYGLDARLFH -----QAFIS F--------- ----RNY--- ---------- bmy_04419T0/1-730 DYGLDARLFH -----QAFIS F--------- ----RNY--- ---------- ENSBTAP00000001386/1-535 DYGLDARLFH -----QAFIS F--------- ----RNY--- ---------- 251 300 BACU001945/1-1021 YIGANVRLRY FLKVTIVRRL TDLVKDYDLI VHQLATYPDV NNSIKMEVGT ENSTTRP00000007748/1-784 -----IMQSH SLDVDIHIIL NDICFS---- ----A--AHV DDLFPFFLRH ENSP00000352678/1-786 -----IMQSH SLDVDIHIVL NDICFG---- ----A--AHA DDLFPFFLRH bmy_04419T0/1-730 -----IMQSH SLDVDIHIIL NDICFS---- ----AGKSHV DDLFPFFLRH ENSBTAP00000001386/1-535 -----IMQSH SLDVDIHIIL NDICFS---- ----A--AHV DDLFPFFLRH 301 350 BACU001945/1-1021 EDCLHIEFEY NKSKYHLKDV IVGKIYFLLV RIKIQHMELQ LIKKEITGIG ENSTTRP00000007748/1-784 AKQIFPVLEC KDDLRKISDL RIPPNWYPEA RV-------- LQRKIIFHSG ENSP00000352678/1-786 AKQIFPVLDC KDDLRKISDL RIPPNWYPDA RA-------- MQRKIIFHSG bmy_04419T0/1-730 AKQIFPVLEC KDDLRKISDL RIPPNWYPEA RA-------- LQRKIIFHSG ENSBTAP00000001386/1-535 AKQIFPVLEC KDDLRKISDL RIPPNWYPEA RA-------- IHRKIIFHSG 351 400 BACU001945/1-1021 PSTTTET-ET IAKYEIMDGA PVKGESIPIR LFLAGYDPTP TMRDVNKKFS ENSTTRP00000007748/1-784 PTNSGKTYHA IQKYLSAKSG VYCG---PLK LL-------- -AHEIFEKSN ENSP00000352678/1-786 PTNSGKTYHA IQKYFSAKSG VYCG---PLK LL-------- -AHEIFEKSN bmy_04419T0/1-730 PTNSGKTYHA IQKYLSAKSG VYCG---PLK LL-------- -AHEIFEKSN ENSBTAP00000001386/1-535 PTNSGKTYHA IQKYLSAKSG VYCG---PLK LL-------- -AHEIFEKSN 401 450 BACU001945/1-1021 VRYFLNLVLV DEEDRRYFKQ QLRCSGSLRD AGTGAVRHCP PPCPQAAPAG ENSTTRP00000007748/1-784 A--------- ---------- ---------- ---------- ----AXXXXX ENSP00000352678/1-786 A--------- ---------- ---------- ---------- ----AGVPCD bmy_04419T0/1-730 A--------- ---------- ---------- ---------- ----AGVPCD ENSBTAP00000001386/1-535 A--------- ---------- ---------- ---------- ----AGVPCD 451 500 BACU001945/1-1021 LFSSLPSQCP SPGGSKAPNT SLFVPLTVKP QGRSADGDVG AELTRPLDKN ENSTTRP00000007748/1-784 XXXXXXXXXX XPDGKQAAHV ACTVEM---- ---------- CSVTTPYEVA ENSP00000352678/1-786 LVTGEERVTV QPNGKQASHV SCTVEM---- ---------- CSVTTPYEVA bmy_04419T0/1-730 LVTGEERVTV EPDGKQAAHV ACTVEM---- ---------- CSVTTPYEVA ENSBTAP00000001386/1-535 LVTGEERVSV DPDGKQAAHV ACTVEM---- ---------- CSVTTPYEVA 501 550 BACU001945/1-1021 EVKKILDKFY KRKEIQK-LS ADYGLDGLCA EEIHLCGESA AIDLVTELMY ENSTTRP00000007748/1-784 ----VIDEIQ MIKDPARGWA WTRALLGLCA EEIHLCGESA AIDLVTELMY ENSP00000352678/1-786 ----VIDEIQ MIRDPARGWA WTRALLGLCA EEVHLCGEPA AIDLVMELMY bmy_04419T0/1-730 ----VIDEIQ MIKDPARGWA WTRALLGLCA EEIHLCGESA AIDMVTELMY ENSBTAP00000001386/1-535 ----VIDEIQ MIKDPARGWA WTRALLGLCA EEIHLCGESA AIDMVTELMY 551 600 BACU001945/1-1021 TTGEDVEVRT YKRLTPIFVL DHALESLDNL RPGDCIVCFS KNDIYSVSRQ ENSTTRP00000007748/1-784 TTGEDVEVRT YKRLTPIFVL DHALESLDNL RPGDCIVCFS KNDIYSVSRQ ENSP00000352678/1-786 TTGEEVEVRD YKRLTPISVL DHALESLDNL RPGDCIVCFS KNDIYSVSRQ bmy_04419T0/1-730 TTGEDVEVRT YKRLTPIFVL DHALESLDNL RPGDCIVCFS KNDIYSVSRQ ENSBTAP00000001386/1-535 TTGEDVEVRT YKRLTPISVL DHALESLDNL RPGDCIVCFS KNDIYSVSRQ 601 650 BACU001945/1-1021 IEIRGLESAV IYGSLPPGTK LAQARKFNDP DDPCKILVAT DAVGMGLNLS ENSTTRP00000007748/1-784 IEIRGLESAV IYGSLPPGTK LAQAKKFNDP GDPCKILVAT DAVGMGLNLS ENSP00000352678/1-786 IEIRGLESAV IYGSLPPGTK LAQAKKFNDP NDPCKILVAT DAIGMGLNLS bmy_04419T0/1-730 IEIRGLESAV IYGSLPPGTK LAQARKFNDP DDPCKILVAT DAVGMGLNLS ENSBTAP00000001386/1-535 IEIRGLESAV IYGSLPPGTK LAQAKKFNDP DDPCKILVAT DAIGMGLNLS 651 700 BACU001945/1-1021 IRRIIFYSLM KPSINEKGEK EIEPITTSQA LQIAGRAGRF SSKFKEGEVT ENSTTRP00000007748/1-784 IRRIIFYSLM KPSINEKGEK EIEPITTSQA LQIAGRAGRF SSKFKEGEVT ENSP00000352678/1-786 IRRIIFYSLI KPSINEKGER ELEPITTSQA LQIAGRAGRF SSRFKEGEVT bmy_04419T0/1-730 IRRIIFYSLM KPSINEKGEK EIEPITTSQA LQIAGRAGRF SSKFKEGEVT ENSBTAP00000001386/1-535 IRRIIFYSLM KPSINEKGEK EIEPITTSQA LQIAGRAGRF SSKFKEGEVT 701 750 BACU001945/1-1021 TMNREDLSLL KEILNRPVEP IKAAGLHPTA EQIEMFAYHL PDTTLSNLID ENSTTRP00000007748/1-784 TMNREDLSLL KEILNRPVDP IKXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000352678/1-786 TMNHEDLSLL KEILKRPVDP IRAAGLHPTA EQIEMFAYHL PDATLSNLID bmy_04419T0/1-730 TMNREDLSLL KEILNRPVDP IKAAGLHPTA EQIEMFAYHL PDTTLSNLI- ENSBTAP00000001386/1-535 TMNREDLSLL KEILNRPVDP IKAAGLHPTA EQIEMFAYHL PDTTLSNLIS 751 800 BACU001945/1-1021 IFVDFSQVDG QYFVCNMDDF KFSAELIQHI PLSLRVRYVF CTAPINKKQP ENSTTRP00000007748/1-784 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000352678/1-786 IFVDFSQVDG QYFVCNMDDF KFSAELIQHI PLSLRVRYVF CTAPINKKQP bmy_04419T0/1-730 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001386/1-535 ---------- ---------- ---------- ---------- ---------- 801 850 BACU001945/1-1021 FVCSSLLQTE VNSDCFTKFV SYVSLSLPGS IXXXXXXXPL TFSWLRRYIK ENSTTRP00000007748/1-784 XXXXXXXX-- ---------- ---------X XXXXXXXXXX XXXXXXXXXX ENSP00000352678/1-786 FVCSSLLQ-- ---------- ---------F ARQYSRNEPL TFAWLRRYIK bmy_04419T0/1-730 ---------- ---------- ---------F ARQYSRNEPL TFSWLRRYIK ENSBTAP00000001386/1-535 ---------- ---------- ---------- ---------- ---------- 851 900 BACU001945/1-1021 WPLLPPKNIK DLMDLEAVHD VLDLYLWLSY RFIDMFPDAS LVRDLQKQLD ENSTTRP00000007748/1-784 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXY RFIDMFPDAS -VRDLQK--D ENSP00000352678/1-786 WPLLPPKNIK DLMDLEAVHD VLDLYLWLSY RFMDMFPDAS LIRDLQKELD bmy_04419T0/1-730 WPLLPPKNIK DLMDLEAVHD VLDLYLWLSY RFIDMFPDAS LVRDLQKQLD ENSBTAP00000001386/1-535 ---------- ---------- ---------- ---------- ---------- 901 950 BACU001945/1-1021 GIIQDGVHNI TKLIKISEAH KLLNLQNSSA ESQSRLSGTV KSQTRRNHGT ENSTTRP00000007748/1-784 GIIQDGVHNI TKLIKISEAH KLLNLQNSSA ESQSRLSGIV KSRTRRNHGT ENSP00000352678/1-786 GIIQDGVHNI TKLIKMSETH KLLNLEGFPS GSQSRLSGTL KSQARRTRGT bmy_04419T0/1-730 GIIQDGVHNI TKLIKISEAH KLLNLQSSSA ESQSRLSGTV KSQTRRNHGT ENSBTAP00000001386/1-535 ---------- ---------- ---------- ---------- ---------- 951 1000 BACU001945/1-1021 KALGSKAAGP LGPGAGEKSL ASRLVQQGLL TADMLKQLEK EWMTQQTEHG ENSTTRP00000007748/1-784 KALGSKAAEP LGSGAGEKSL ASRLVQQGLL TADMLKQLER EWMTQQTEHG ENSP00000352678/1-786 KALGSKATEP PSPDAGELSL ASRLVQQGLL TPDMLKQLEK EWMTQQTEHN bmy_04419T0/1-730 KALGSKAAEP LGPGAGEKSL ASRLVQQGLL TADMLKQLEK EWMTQQTEHG ENSBTAP00000001386/1-535 ---------- ---------- ---------- ---------- ---------- 1001 1050 BACU001945/1-1021 KGRTESGTSS KGTRRKKKEP DSD ENSTTRP00000007748/1-784 KGRTESGTSL KGTRRKKKEP DSD ENSP00000352678/1-786 KEKTESGTHP KGTRRKKKEP DSD bmy_04419T0/1-730 KGRTESGTSS KGTRRKKKEP DSD ENSBTAP00000001386/1-535 ---------- ---------- ---