KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:14:11 2014 Check: 00 .. Name: ENSP00000363458/1-308 Len: 323 Check: 996 Weight: 1.00 Name: ENSBTAP00000001393/1-310 Len: 323 Check: 4012 Weight: 1.00 Name: ENSTTRP00000011787/1-309 Len: 323 Check: 2300 Weight: 1.00 Name: bmy_02040T0/1-277 Len: 323 Check: 5645 Weight: 1.00 Name: BACU007586/1-264 Len: 323 Check: 5251 Weight: 1.00 // 1 50 ENSP00000363458/1-308 MDALKSAGRA LIRSPSLAKQ SWG-GGGRHR KLPENWTDTR ETLLEGMLFS ENSBTAP00000001393/1-310 MDALKSAGRA LIRSPSLAKQ SWGCGGGRHR KLPENWTDTR ETLLEGMLFS ENSTTRP00000011787/1-309 MDALKSAGRA LIRSPSLAKQ SWG-GGGRHR KLPENWTDTR ETLLEGMLFS bmy_02040T0/1-277 ---------- ---------- ---------- ---------- ------MLFS BACU007586/1-264 ---------- ---------- ---------- ---------- ------MLFS 51 100 ENSP00000363458/1-308 LKYLGMTLVE QPKGEELSAA AIKRIVATAK ASGKKLQKVT LKVSPRGIIL ENSBTAP00000001393/1-310 LKYLGMTLVE QPKGEELSAA AVKRIVATAK ASGKKLQKVT LKVSPRGIIL ENSTTRP00000011787/1-309 LKYLGMTLVE QPKGEELSAA AVKRIVATAK ASGKKLQKVT LKVSPRGIIL bmy_02040T0/1-277 LKYLGMTLVE QPKGEELSAA AVKRIVATAK ASGKKLQKVT LKVSPRGIIL BACU007586/1-264 LKYLGMTLVE QPKGEELSAA AVKRIVATAK ASGKKLQKVT LKVSPRGIIL 101 150 ENSP00000363458/1-308 TDNLTNQLIE NVSIYRISYC TADKMHDKVF AYIAQSQHNQ SLECHAFLCT ENSBTAP00000001393/1-310 TDNITNQLIE NVSIYRISYC TADKMHDKVF AYIAQSQHNE NLECHAFLCT ENSTTRP00000011787/1-309 TDNITNQLIE NVSIYRISYC TTDKMHDKVF AYIAQSQHNE NLECHAFLCT bmy_02040T0/1-277 TDSITSQLIE NVSIYRISYC TADKMHDKVF AYIAQSQHNE NLECHAFLCT BACU007586/1-264 TDSISSQLIE NVSIYRISYC TADKMHDKVF AYIAQSQHNE NLECHAFLCT 151 200 ENSP00000363458/1-308 KRKMAQAVTL TVAQAFKVAF EFWQ------ -------VSK EEKEKRDKAS ENSBTAP00000001393/1-310 KRKMAQAVTL TVAQAFKVAF ELWQ------ -------VSK EEKEKREKAN ENSTTRP00000011787/1-309 KRKMAQAVTL TVAQAFKVAF EFWQ------ -------VSK EEKEKREKTS bmy_02040T0/1-277 KRKMAQAVTL TVAQAFKVAF EFWQGWSAGV GGPNTLCLGP TEKEKREKTS BACU007586/1-264 KRKMAQAVTL TVAQAFKVAF EFWQ------ -------VSK EEKEKREKTS 201 250 ENSP00000363458/1-308 QEGGDVL-GA RQDCTPSLKS LVATGNLLDL EETAKAPLST VSANTTNMDE ENSBTAP00000001393/1-310 QEGADVLGGS PQDSAPSLKS LVVTGNLLDF EETAKAPLST VSANTTKADE ENSTTRP00000011787/1-309 QDGGDILAGG RQDSTPSLKS LVATGNLLDL EETAKAPLST VSANTANMDE bmy_02040T0/1-277 QDGGDILGGG CRDSTPSLKS LVATGNLLDL EETAKAPLST VSANTTHMDE BACU007586/1-264 QDGGDILGGG CRDSTPSLKS LVATGNLLDL EETAKAPLSA VSANTTHMDE 251 300 ENSP00000363458/1-308 VPRPQALSGS SVVWELDDGL DEAFSRLAQS RTNPQVLDTG LTAQDMHYAQ ENSBTAP00000001393/1-310 PPRPQALNSS SVVWELDDGL DEAFSRLAQS RTNPQVLDTG LTAQDIHYAQ ENSTTRP00000011787/1-309 ALRPQALNSS SVVWELDDGL DEAFSRLAQS RTNPQVLDTG LTAQDIHYAQ bmy_02040T0/1-277 ALRPQALNSS NVVWELDDGL DEAFSRLAQS RTNPQVLDTG LTAQDIHYAQ BACU007586/1-264 ALRPQDLNSS SVVWELDDGL DEAFSRLAQS RTNPQVLDTG LTAQDIHYAQ 301 350 ENSP00000363458/1-308 CLSPVDWDKP DSSGTEQDDL FSF ENSBTAP00000001393/1-310 CLSPVDWDKP DSGGAEPDDL FNF ENSTTRP00000011787/1-309 CLSPVDWDKP DSGGAEPDDL FNF bmy_02040T0/1-277 CLSPVDWDKX DSSGAEPDDL FNF BACU007586/1-264 CLSPVDWDKP DSSGAEPDDL FNF