KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:14:14 2014 Check: 00 .. Name: ENSTTRP00000001352/1-1080 Len: 1081 Check: 4077 Weight: 1.00 Name: bmy_17354T0/1-916 Len: 1081 Check: 4575 Weight: 1.00 Name: BACU002359/1-872 Len: 1081 Check: 6885 Weight: 1.00 Name: ENSP00000378492/1-872 Len: 1081 Check: 7079 Weight: 1.00 Name: ENSBTAP00000001415/1-872 Len: 1081 Check: 8845 Weight: 1.00 // 1 50 ENSTTRP00000001352/1-1080 ELREAGRQPT SRLSSPKNAR SASRSLVLPA PPSFGQSFCL CLCLCLSLPG bmy_17354T0/1-916 ---------- ---------- ---------- ---------- ---------- BACU002359/1-872 ---------- ---------- ---------- ---------- ---------- ENSP00000378492/1-872 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001415/1-872 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000001352/1-1080 SIAPSLNFVA QAPGCPLLGF SLPSVPELWS QPPLWEDRGL TSLDLSPHLG bmy_17354T0/1-916 ---------- ---------- ---------- ---------- ---------- BACU002359/1-872 ---------- ---------- ---------- ---------- ---------- ENSP00000378492/1-872 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001415/1-872 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000001352/1-1080 PCPHLCWASC LPLSRLPASW VPPH-FSCLS FPGYLYLSLP LLLLPSPPGG bmy_17354T0/1-916 ---------- --------SW VPPHPFPVCP FLVYLHLSLP LLLLPSPPGG BACU002359/1-872 ---------- ---------- ---------- ---------- ---------- ENSP00000378492/1-872 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001415/1-872 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000001352/1-1080 PGLLDPSIPF GAMGSLLGFL ALLLLWGAVA EGPAKKVLTL EGDLILGGLF bmy_17354T0/1-916 PGLLDPSIPF GAMGSLLGFL ALLLLWGAVA EGPAKKVLTL EGDLILGGLF BACU002359/1-872 ---------- --MGSLLGFL ALLLLWGAVA EGPAKKVLTL EGDLILGGLF ENSP00000378492/1-872 ---------- --MGSLLALL ALLLLWGAVA EGPAKKVLTL EGDLVLGGLF ENSBTAP00000001415/1-872 ---------- --MGSLLGLL ALLLLWGAVA EGPAKKVLTL EGDLVLGGLF 201 250 ENSTTRP00000001352/1-1080 PVHQKGGPAE ECGPVNEHRG IQRLEAMLFA LDRINHDPSL LPGVRLGAHI bmy_17354T0/1-916 PVHQKGGPAE ECGPVNEHRG IQRLEAMLFA LDRINHDPSL LPGVRLGAHI BACU002359/1-872 PVHQKGGPAE ECGPVNEHRG IQRLEAMLFA LDRINHDPSL LPGVRLGAHI ENSP00000378492/1-872 PVHQKGGPAE DCGPVNEHRG IQRLEAMLFA LDRINRDPHL LPGVRLGAHI ENSBTAP00000001415/1-872 PVHQKGGPAE ECGPVNEHRG IQRLEAMLFA LDRINRDPSL LPGVRLGAHI 251 300 ENSTTRP00000001352/1-1080 LDSCSKDTHA LEQALDFVRA SLSHGADGSR HVCPDGSYAT HGDAPTAITG bmy_17354T0/1-916 LDSCSKDTHA LEQALDFVRA SLSHGADGSR HVCPDGSYAT HGDAPTAITG BACU002359/1-872 LDSCSKDTHA LEQALDFVRA SLSHGADGSR HVCPDGSYAT HGDAPTAITG ENSP00000378492/1-872 LDSCSKDTHA LEQALDFVRA SLSRGADGSR HICPDGSYAT HGDAPTAITG ENSBTAP00000001415/1-872 LDSCSKDTHA LEQALDFVRA SLSRGADGSR HICPDGSYAT HGDAPTAITG 301 350 ENSTTRP00000001352/1-1080 VIGGSYSDVS IQVANLLRLF QIPQISYAST SAKLSDKSRY DYFARTVPPD bmy_17354T0/1-916 VIGGSYSDVS IQVANLLRLF QIPQISYAST SAKLSDKSRY DYFARTVPPD BACU002359/1-872 VIGGSYSDVS IQVANLLRLF QIPQISYAST SAKLSDKSRY DYFARTVPPD ENSP00000378492/1-872 VIGGSYSDVS IQVANLLRLF QIPQISYAST SAKLSDKSRY DYFARTVPPD ENSBTAP00000001415/1-872 VIGGSYSDVS IQVANLLRLF QIPQISYAST SAKLSDKSRY DYFARTVPPD 351 400 ENSTTRP00000001352/1-1080 FFQAKAMAEI LRFFNWTYVS TVASEGDYGE TGIEAFELEA RARNICVATS bmy_17354T0/1-916 FFQAKAMAEI LRFFNWTYVS TVASEGDYGE TGIEAFELEA RARNICVATS BACU002359/1-872 FFQAKAMAEI LRFFNWTYVS TVASEGDYGE TGIEAFELEA RARNICVATS ENSP00000378492/1-872 FFQAKAMAEI LRFFNWTYVS TVASEGDYGE TGIEAFELEA RARNICVATS ENSBTAP00000001415/1-872 FFQAKAMAEI LRFFNWTYVS TVASEGDYGE TGIEAFELEA RARNICVATS 401 450 ENSTTRP00000001352/1-1080 EKVGRAMSRT AFEGVVRALL QKPSARVAVL FTRSEDAREL LAATQRLNAS bmy_17354T0/1-916 EKVGRAMSRT AFEGVVRALL QKPSARVAVL FTRSEDAREL LAATQRLNAS BACU002359/1-872 EKVGRAMSRA AFEGVVRALL QKPSARVAVL FTRSEDAREL LAATQRLNAS ENSP00000378492/1-872 EKVGRAMSRA AFEGVVRALL QKPSARVAVL FTRSEDAREL LAASQRLNAS ENSBTAP00000001415/1-872 EKVGRAMSRA AFEGVVRALL QKPSARVAVL FTRSEDAREL LAATQRLNAS 451 500 ENSTTRP00000001352/1-1080 FTWVASDGWG ALESVVAGSE GAAEGAITIE LASYPISDFA SYFRSLDPWN bmy_17354T0/1-916 FTWVASDGWG ALESVVAGSE GAAEGAITIE LASYPISDFA SYFRSLDPWN BACU002359/1-872 FTWVASDGWG ALESVVAGSE GAAEGAITIE LASYPISDFA SYFRSLDPWN ENSP00000378492/1-872 FTWVASDGWG ALESVVAGSE GAAEGAITIE LASYPISDFA SYFQSLDPWN ENSBTAP00000001415/1-872 FTWVASDGWG ALESVVAGSE GAAEGAITIE LASYPISDFA SYFQSLDPWN 501 550 ENSTTRP00000001352/1-1080 NSRNPWFREF WEQRFHCSFR QRDCAAHSLQ AVPFEQESKI MFVVNAVYAM bmy_17354T0/1-916 NSRNPWFREF WEQRFRCSFQ QRDCAAHSLQ AVPFEQESKI MFVVNAVYAM BACU002359/1-872 NSRNPWFREF WEQRFRCSFR QRDCAAHSLQ AVPFEQESKI MFVVNAVYAM ENSP00000378492/1-872 NSRNPWFREF WEQRFRCSFR QRDCAAHSLR AVPFEQESKI MFVVNAVYAM ENSBTAP00000001415/1-872 NSRNPWFREF WEQRFRCSFR QQDCAAHSLR AVPFEQESKI MFVVNAVYAM 551 600 ENSTTRP00000001352/1-1080 AHALHNMHRT LCPNTTRLCD AMRPVNGRRL YKDFVLNVKF DGNAAGQCPP bmy_17354T0/1-916 AHALHNMHRA LCPNTTRLCD AMRPVNGRRL YKDFVLNVKF D--------- BACU002359/1-872 AHALHNMHRA LCPNTTRLCD AMRPVNGRRL YKDFVLNVKF D--------- ENSP00000378492/1-872 AHALHNMHRA LCPNTTRLCD AMRPVNGRRL YKDFVLNVKF D--------- ENSBTAP00000001415/1-872 AHALHNMHRA LCPNTTRLCD AMQPVNGRRL YKDFVLNVKF D--------- 601 650 ENSTTRP00000001352/1-1080 GSWPSEGERE QALRFYTAKK TAQMTHQSNP LFLPSSTPAP FRPADTHSEV bmy_17354T0/1-916 ---------- ---------- ---------- --------AP FRPADTHSEV BACU002359/1-872 ---------- ---------- ---------- --------AP FRPADTHSEV ENSP00000378492/1-872 ---------- ---------- ---------- --------AP FRPADTHNEV ENSBTAP00000001415/1-872 ---------- ---------- ---------- --------AP FRPADTHSEV 651 700 ENSTTRP00000001352/1-1080 RFDRFGDGIG RYNIFTYLRA GSGHYRYQKV GYWAEGLTLD TSLIPWASLS bmy_17354T0/1-916 RFDRFGDGIG RYNIFTYLRA GSGRYRYQKV GYWAEGLTLD TSLIPWASLS BACU002359/1-872 RFDRFGDGIG RYNIFTYLRA GSGRYRYQKV GYWAEGLTLD TSLIPWASLS ENSP00000378492/1-872 RFDRFGDGIG RYNIFTYLRA GSGRYRYQKV GYWAEGLTLD TSLIPWASPS ENSBTAP00000001415/1-872 RFDRFGDGIG RYNIFTYLRA GGGRYRYQKV GYWAEGLTLD TSLIPWASPS 701 750 ENSTTRP00000001352/1-1080 AGPLPASRCS EPCLQNEVKS MQPGEVCCWL CIPCQPYEYR LDEFTCADCG bmy_17354T0/1-916 AGPLPASRCS EPCLQNEVKS MQPGEVCCWL CIPCQPYEYR LDEFTCADCG BACU002359/1-872 AGPLPASRCS EPCLQNEVKS MQPGEVCCWL CIPCQPYEYR LDEFTCADCG ENSP00000378492/1-872 AGPLPASRCS EPCLQNEVKS VQPGEVCCWL CIPCQPYEYR LDEFTCADCG ENSBTAP00000001415/1-872 AGPLPASRCS EPCLQNEVKS VQPGEVCCWL CIPCQPYEYR LDEFTCADCG 751 800 ENSTTRP00000001352/1-1080 LGYWPNASLT GCFELPQEYI RWGDAWAVGP VTIACLGALA TLFVLGVFVR bmy_17354T0/1-916 LGYWPNASLT GCFELPQEYI RWGDAWAVGP VTIACLGALA TLFVLGVFVR BACU002359/1-872 LGYWPNASLT GCFELPQEYI RWGDAWAVGP VTIACLGALV TLFVLGVFVR ENSP00000378492/1-872 LGYWPNASLT GCFELPQEYI RWGDAWAVGP VTIACLGALA TLFVLGVFVR ENSBTAP00000001415/1-872 LGYWPNASLT GCFELPQEYI RWGDAWAVGP VTIACLGALA TLFVLGVFVR 801 850 ENSTTRP00000001352/1-1080 HNATPVVKAS GRELCYILLG GVFLCYCMTF VFIAKPSTVV CTLRRLGLGT bmy_17354T0/1-916 HNATPVVKAS GRELCYILLG GVFLCYCMTF VFIAKPSTVV CTLRRLGLGT BACU002359/1-872 HNATPVVKAS GRELCYILLG GVFLCYCMTF VFIAKPSTVV CTLRRLGLGT ENSP00000378492/1-872 HNATPVVKAS GRELCYILLG GVFLCYCMTF IFIAKPSTAV CTLRRLGLGT ENSBTAP00000001415/1-872 HNATPVVKAS GRELCYILLG GVFLCYCMTF VFIAKPSTAV CTLRRLGLGT 851 900 ENSTTRP00000001352/1-1080 AFSVCYSALL TKTNRIARIF GGAREGAQRP RFISPASQVA ICLALISGQL bmy_17354T0/1-916 AFSVCYSALL TKTNRIARIF GGAREGAQRP RFISPASQVA ICLALISGQL BACU002359/1-872 AFSICYSALL TKTNRIARIF GGAREGAQRP RFISPASQVA ICLALISGQL ENSP00000378492/1-872 AFSVCYSALL TKTNRIARIF GGAREGAQRP RFISPASQVA ICLALISGQL ENSBTAP00000001415/1-872 AFSVCYSALL TKTNRIARIF GGAREGAQRP RFISPASQVA ICLALISGQL 901 950 ENSTTRP00000001352/1-1080 LIVAAWLVVE APGTGKETAP ERREVVTLRC NHRDASMLGS LAYNVLLIAL bmy_17354T0/1-916 LIVAAWLVVE APGTGKETAP ERREVVTLRC NHRDASMLGS LAYNVLLIAL BACU002359/1-872 LIVAAWLVVE APGTGKETAP ERREVVTLRC NHRDASMLGS LAYNVLLIAL ENSP00000378492/1-872 LIVVAWLVVE APGTGKETAP ERREVVTLRC NHRDASMLGS LAYNVLLIAL ENSBTAP00000001415/1-872 LIVATWLVVE APGTGKETAP ERREVVTLRC NHRDASMLGS LAYNVLLIAL 951 1000 ENSTTRP00000001352/1-1080 CTLYAXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXVQT bmy_17354T0/1-916 CTLYAFKTRK CPENFNEAKF IGFTMYTTCI IWLAFLPIFY VTSSDYRVQT BACU002359/1-872 CTLYAFKTRK CPENFNEAKF IGFTMYTTCI IWLAFLPIFY VTSSDYRVQT ENSP00000378492/1-872 CTLYAFKTRK CPENFNEAKF IGFTMYTTCI IWLAFLPIFY VTSSDYRVQT ENSBTAP00000001415/1-872 CTLYAFKTRK CPENFNEAKF IGFTMYTTCI IWLAFLPIFY VTSSDYRVQT 1001 1050 ENSTTRP00000001352/1-1080 TTMCVSVSLS GSVVLGCLFA PKLHIILFQP QKNVVSHRAP TSRFSSAAAR bmy_17354T0/1-916 TTMCVSVSLS GSVVLGCLFA PKLHIILFQP QKNVVSHRAP TSRFSSAAAR BACU002359/1-872 TTMCVSVSLS GSVVLGCLFA PKLHIILFQP QKNVVSHRAP TSRFSSAAAR ENSP00000378492/1-872 TTMCVSVSLS GSVVLGCLFA PKLHIILFQP QKNVVSHRAP TSRFGSAAAR ENSBTAP00000001415/1-872 TTMCVSVSLS GSVVLGCLFA PKLHIILFQP QKNVVSHRTP TSRFGSAAAR 1051 1100 ENSTTRP00000001352/1-1080 ASSSLGQGSG SQFVPTVCNG HEVVDSTTSS L bmy_17354T0/1-916 ASSSLGQGSG SQFVPTVCNG REVVDSTTSS L BACU002359/1-872 ASSSLGQGSG SQFVPTVCNG REVVDSTTSS L ENSP00000378492/1-872 ASSSLGQGSG SQFVPTVCNG REVVDSTTSS L ENSBTAP00000001415/1-872 ASSSLGQGSG SQFVPTVCNG REVVDSTTSS L