KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:14:15 2014 Check: 00 .. Name: ENSP00000365080/1-458 Len: 487 Check: 2321 Weight: 1.00 Name: bmy_17988T0/1-308 Len: 487 Check: 8212 Weight: 1.00 Name: ENSBTAP00000001416/1-457 Len: 487 Check: 475 Weight: 1.00 Name: BACU017428/1-178 Len: 487 Check: 9873 Weight: 1.00 Name: ENSTTRP00000011395/1-451 Len: 487 Check: 255 Weight: 1.00 // 1 50 ENSP00000365080/1-458 MTRGAWMCRQ YDDGLKIWLA APRENEKPFI DSERAQKWRL SLASLLFFTV bmy_17988T0/1-308 MTRGAWMCRQ YDDGLKIWLA APRENEKPFI DSERAQKWRL SLASLLFFTV ENSBTAP00000001416/1-457 MTRGAWMCRQ YDDGLKIWLA APRENEKPFI DSERAQKWRL SLASLLFFTV BACU017428/1-178 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011395/1-451 MTRGAWMCRQ YDDGLKIWLA APRENEKPFI DSERAQKWRL SLASLLFFTV 51 100 ENSP00000365080/1-458 LLSDHLWFCA EAKLTRARDK EHQQQQRQQQ QQQQQQRQRQ QQQQQRRQQE bmy_17988T0/1-308 LLSDHLWFCA EAKLTRTRDK E--------- --QRQQRQRQ QQQQRQRQQE ENSBTAP00000001416/1-457 LLSDHLWFCA EAKLTRARDK E--QQQQQQQ QQQRQQRQRQ EQRQRQRQHE BACU017428/1-178 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011395/1-451 LLSDHLWFCA EAKLTRTRDK E------QQQ QQQRQQRQRQ QQQQRQRQQE 101 150 ENSP00000365080/1-458 PSWPALLASM GESSPAAQAH RLLSASSSPT LPPSPGDGGG GGGKGNRGKD bmy_17988T0/1-308 PSWPALLASM GEPSPAAQAP RLLAXASAPA LPPSP--GAG GGGQGSRGSS ENSBTAP00000001416/1-457 PSWPALLASM GEPSPAAQAH RLLSASPSPT LPPSL--GGG GGGKGGRGTD BACU017428/1-178 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011395/1-451 PSWPALLASM GESSPAAQAH RLLAASSSPT LPPSP--GDG GGGKGSRGRN 151 200 ENSP00000365080/1-458 DRGKALFLGN SAKPVWRLET CYPQGASSGQ CFTVENADAV CARNWSRG-A bmy_17988T0/1-308 SRGEALVLGH SAQPVWRLET CYPQGASSGQ CFTVESADAV CARNWSRGVA ENSBTAP00000001416/1-457 SRGKPPLPGN SARPAWRLET CYPQGASSGQ CFTVDSADAV CARNWSRGAA BACU017428/1-178 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011395/1-451 NRGKALILGN SAKPVWRLET CYPQGASSGQ CFTVESADAV CARNWSRGLA 201 250 ENSP00000365080/1-458 AGGD-GQEVR S-KHPTPLWN LSDFYLSFCN SYTLWELFSG LSSPNTLNCS bmy_17988T0/1-308 AGGE-EPQVR G-THPTPLWN LSDFYLSFCN SYTLWELFSG LSSPNTLNCS ENSBTAP00000001416/1-457 ARGEQGQQTR GPPQPTPLWN LSDFYLSFCN SYTLWELFSG LSSPNTLNCS BACU017428/1-178 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011395/1-451 ATGE-EQQVR G-THPTPLWN LSDFYLSFCN SYTLWELFSG LSSPNTLNCS 251 300 ENSP00000365080/1-458 LDVVLKEGGE MTTCRQCVEA YQDYDHHAQE KYEEFESVLH KYLQSEEYSV bmy_17988T0/1-308 LDVVLKEGGE MTTCRQCVEA YQDYDHHAQE KYEEFESVLH KYLQSEEYSV ENSBTAP00000001416/1-457 LDVVLKEGGE MTTCRQCVEA YQDYDHHAQE KYEEFESVLH KYLQSEEYSV BACU017428/1-178 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011395/1-451 LDVVLKEGGE MTTCRQCVEA YQDYDHHAQE KYEEFESVLH KYLQSEEYSV 301 350 ENSP00000365080/1-458 KSCPEDCKIV YKAWLCSQYF EVTQFNCRKT IPCKQYCLEV QTRCPFILPD bmy_17988T0/1-308 KSCPEDCK-C Y----CTYYV QSVEYVCK-- ---------- ---------- ENSBTAP00000001416/1-457 KSCPEDCKIV YKAWLCSQYF EVAQLNCRKT IPCKQYCLEV QTRCPFILPD BACU017428/1-178 ---------V YKAWLCSQYF EVAQLNCRKT IPCKQYCLEV QTRCPFILPD ENSTTRP00000011395/1-451 KSCPEDCKIV YKAWLCSQYF EVAQLNCRKT IPCKQYCLEV QTRCPFILPD 351 400 ENSP00000365080/1-458 NDEVIYGGLS SFICTG---- ---------- ---------- --LYETFLTN bmy_17988T0/1-308 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001416/1-457 NDEVIYGGLS SFICTG---- ---------- ---------- --LYETFLTN BACU017428/1-178 NDEVIYGGLS SFICTAGEGP PVGEEKAKVK FTFECLRRNE YWLYETFLTN ENSTTRP00000011395/1-451 NDEVIYGGLS SFICTG---- ---------- ---------- --LYETFLTN 401 450 ENSP00000365080/1-458 DEPECCDVRR EEKSNNPSKG TVEKSGSCHR TSLTVSSATR LCNSRLKLCV bmy_17988T0/1-308 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001416/1-457 DEPECCDVRR EAKPKSPSKG AGDRGGACPR TSLSASSAPR LGPSRLRLCV BACU017428/1-178 DEPECCDVRR EAKSNTPSKG TVDRGGSCPR TSLPASAAPR LGPSRLRLCV ENSTTRP00000011395/1-451 DEPECCDVRR EAKSNTPSKG TVDRGGSCPR TSLPASAAPR LGPGRLRLCV 451 500 ENSP00000365080/1-458 LVLILLHTVL TASAAQNTAG LSFGGINTLE ENSTNEE bmy_17988T0/1-308 ---------- ---------- ---------- ------- ENSBTAP00000001416/1-457 LVLMLLHTVL TASVAHNATA LGVGGVHTLD ERSASEE BACU017428/1-178 LVLILLHTVL TASAAQNATA LGFGGVHALD ERSASKE ENSTTRP00000011395/1-451 LMLMLLHTVL TASAAQNATA LGVGGVHALD ERSASKE