KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:14:15 2014 Check: 00 ..
Name: ENSP00000381109/1-648 Len: 711 Check: 3262 Weight: 1.00
Name: ENSTTRP00000008410/1-644 Len: 711 Check: 1793 Weight: 1.00
Name: ENSBTAP00000001417/1-644 Len: 711 Check: 1802 Weight: 1.00
Name: bmy_16104T0/1-603 Len: 711 Check: 5668 Weight: 1.00
Name: BACU012082/1-570 Len: 711 Check: 455 Weight: 1.00
//
1 50
ENSP00000381109/1-648 --MMTTLQNK ---------- ---------- ---------- ----------
ENSTTRP00000008410/1-644 --MMTTLQSK ---------- ---------- ---------- ----------
ENSBTAP00000001417/1-644 --MMPTLESK ---------- ---------- ---------- ----------
bmy_16104T0/1-603 MAEITQLRRR RSRFQLRMRL SPASTPPVGV EISTFVIVEE NTSPETEEQR
BACU012082/1-570 --MITFLS-- ---------- ---------- ---------- ----------
51 100
ENSP00000381109/1-648 ----EECGKG PKRIFAPPAQ KSYSLLPCSP NSPKEETPGI SSPETEARIS
ENSTTRP00000008410/1-644 -----ECGKG PKKTFAPPAQ KLHSLMPYNL NSSKEEILGI SSPEAETRPS
ENSBTAP00000001417/1-644 ----EKCGKG PKYTFAPPAQ KLHSLMSYNL NSSKEEILEI SSPQAEVRPS
bmy_16104T0/1-603 LDLSDKCGKG PKKTFAPPAQ KLHSLMPCNL NSSKEDILGI SSPEAETRPS
BACU012082/1-570 -----ECGKG PKKTFAPPAQ KLQSLMPCNL NSSKEEILGI SSPEAETRPS
101 150
ENSP00000381109/1-648 LPKASLK--K KEEKATMKNV PSREQEKKRK AQINKQAEKK EKEKSSLTNA
ENSTTRP00000008410/1-644 LLKARLE--K KKEKTTKENG TSSGQEIKGK AQDSKKAEKK EKGKSTLTNA
ENSBTAP00000001417/1-644 LLKAGLEKKK KKKKTTTENG PGNGQEIQGK AQDSKNA-KK EKEKSTLTNA
bmy_16104T0/1-603 LLKARLE--K KKEKTTKENG TGSGQEIKGK AQDNKKAEKK EKGKSTLTNA
BACU012082/1-570 LLKARLE--K KKEKTTKENG TGSGQEIKGR AQDNKKAEKK EKGKSTLTNA
151 200
ENSP00000381109/1-648 EFEEIVQIVL QKSLQECLGM GSGLDFAETS CAQPVVSTQS DKEPGITAS-
ENSTTRP00000008410/1-644 EFEEIVQIVL QKSLQECLXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXX-
ENSBTAP00000001417/1-644 EFEEIVQIVL QKSFQECLE- --------TS CTQPTRCTQL DKEPGIASSN
bmy_16104T0/1-603 EFEEIVQIVL QKSLQECLA- --------TS CAQPTRCTQL DKEPGIASS-
BACU012082/1-570 EFEEIVQIVL QKSLQECLGM ESSLDFAETS CAQPTRCTQL DKEPGIASS-
201 250
ENSP00000381109/1-648 ATDTDNANGE EV--PHTQEI SVSWEGEAAP EIRTSKLGQP DPAPSKKKSN
ENSTTRP00000008410/1-644 XXXXXXXXXE RVVVPHILEI SASQEGGN-P EIKTSKPGQP DPAPSEKKFN
ENSBTAP00000001417/1-644 TSDNNNADGD RVVVPPILEI SASQEDGIIP EIKISKPGQP DSASSEKKFN
bmy_16104T0/1-603 TTDNNNADGE RVVVPHILEI SASQEGGVIP EIKTSKPGQP DPAPSEKKFN
BACU012082/1-570 TTDNNNADGE RVVVPHILEI SASQEGGVIP EIKTSKPGQP DPAPSEKKFN
251 300
ENSP00000381109/1-648 RLTLSKRKKE A-HEKVEKTQ GGHEHRQEDR LKKTVQDHSQ IRDQQKGEIS
ENSTTRP00000008410/1-644 KLSLSKRKKA --HEKMEKAQ SGHEHRQKDQ LKKTVQDHSQ IRDQQKGEGS
ENSBTAP00000001417/1-644 KLSLSKRKKE AQDEKMEKDQ SGHEHRQDDQ HKKTIQDHSQ NRDQQKGEGS
bmy_16104T0/1-603 KLSLSKRKKA AQDEKMEKAQ SGHEHKQKDQ LKKTVQDHSQ IRDQQKGEGS
BACU012082/1-570 KLSLSKRKKA AQDEKMEKAQ SGHEHKQKDQ LKKTVQDHSQ IRDQQKGEGS
301 350
ENSP00000381109/1-648 GFGQCLVWVQ CSFPNCGKWR RLCGNIDPSV LPDNWSCDQN TDVQYNRCDI
ENSTTRP00000008410/1-644 GFXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXLEYNHCDI
ENSBTAP00000001417/1-644 GFGQCLVWVQ CSSPNCEKWR RLRGNIDPSV LPDNWSCDQN TDLQYNRCDI
bmy_16104T0/1-603 GFGQCLVWVQ CSSPNCEKWR RLRGNIDPSV LPDNWSCDQN TDLEYNHCDI
BACU012082/1-570 GFGQCLVWVQ CSSPNCEKWR RLRGNIDPSV LPDNWSCDQN TDLEYNHCDI
351 400
ENSP00000381109/1-648 PEETWTGLES DVAYASYIPG SIIWAKQYGY PWWPGMIESD PDLGEYFLFT
ENSTTRP00000008410/1-644 PEETWTGHEN EVAYASYIPG SIIWAKQYGY PXXXGMV-SD PDLGEYFLFA
ENSBTAP00000001417/1-644 PEETWTGHES DVAYASYIPG SIIWAKQYGY PWWPGMVEPD PDLGEYFLFA
bmy_16104T0/1-603 PEETWTGHES EVAYASYIPG SIIWAKQYGY PWWPGMVESD PDLGEYFLFA
BACU012082/1-570 PEETWTGHES EVAYASYVPG SIIWAKQYGY PWWPGMVESD PDLGEYFLFA
401 450
ENSP00000381109/1-648 SHLDSLPSKY HVTFFGETVS RAWIPVNMLK NFQELSLELS VMKKRRN-DC
ENSTTRP00000008410/1-644 SHLDSLPSKY HVTFFGETVS RAWIPVNMLK NFQELSLELA AVKKCKNKDF
ENSBTAP00000001417/1-644 SHLDSLPSKY HVTFFGETVS RAWIPVNMLK NFQELTLELS GVRKCKNKDC
bmy_16104T0/1-603 SHLDSLP--- ---------- ---------- ---------- --KKCRSKDC
BACU012082/1-570 SHLDSLP--- ---------- ---------- ---------- --KKCRSKDC
451 500
ENSP00000381109/1-648 SQKLGVALMM AQEAEQISIQ ERVNLFGFWS RFNGSNSNGE RKDLQLSGLN
ENSTTRP00000008410/1-644 SQKLGAALMM AQEAEQISIQ ERVNLFGFWS RYSGSDYSGE GKDVMLSGAN
ENSBTAP00000001417/1-644 SQKLLVALMM AQKAEQISIQ ERVNLFGFWS RYSGPDNDGE EKDLALSGTS
bmy_16104T0/1-603 SQELGAALMM AQEAEQISIQ ERVNLFGFWS RYSGSDNSGE GKDVMLSGAN
BACU012082/1-570 SQKLGAALMM AQEAEQINIQ ERVNLFGFWS RYSGSDNSGE GKDVMLSGAN
501 550
ENSP00000381109/1-648 SPGSCLEKKE KEEELE---- ----KEEGEK TDPILPIRKR VKIQTQKTKP
ENSTTRP00000008410/1-644 SLDSCLEKEE EESELEEE-- ----EEE--- -DPTLPGPKP AKIQTKKPKA
ENSBTAP00000001417/1-644 SLDSCLEKEE KEPELEEDG- ----EEERDK ADPTLLNPKP AKIQTKKPKT
bmy_16104T0/1-603 SLDSCLEKEE EESELEEE-- ----EEEQQK KDPTLPGPKP AKIQTKKPKA
BACU012082/1-570 SLDSCLEKEE EESELEEESE LEEEEEEQQK KDPTLPGPKP AKIQTKKPKE
551 600
ENSP00000381109/1-648 RGL--GGDAG TADGRGRTLQ RKIMKRSLGR KSTAPPAPRM GRKEGQGNSD
ENSTTRP00000008410/1-644 RGV--GGDAG GAHGRDGTPQ RKTMKRSLGN ESAAPSLPIM GKKKGHGNSE
ENSBTAP00000001417/1-644 RGLGVGSDAG GADERDGTLK RRTTKRPLLN EPAPPPVPIM GRTKGHGNSG
bmy_16104T0/1-603 RG-------- GAHGRDGIPQ RKTMKRSLGN ESAAPPLPIM GGKKGHGNS-
BACU012082/1-570 RG-------- ---------- ---------- ---------- ----------
601 650
ENSP00000381109/1-648 SDQPGPKKKF KAPQSKALAA SFSEGKEVRT VPKNLGLSAC KGACPSSAKE
ENSTTRP00000008410/1-644 PEQPGPKKKF KAPQSKAPVS SSSEEKEARI VPEVLTPPAP PGACPVLGKK
ENSBTAP00000001417/1-644 SEQPDPKKKF KAPQSKAPVS SLSEEKEARL VPEVLIAPAP CGACHVVGEE
bmy_16104T0/1-603 ---------- ---------- ---------- ---------- ---EP--EQP
BACU012082/1-570 -----PKKKF KAPQSKAPVS DSSEEKEARI VPEVLTPPAP PGACPMVGKE
651 700
ENSP00000381109/1-648 EPRHREPLTQ EAGSVPLEDE ASSDLDLEQL MEDVGRELGQ SGELQHSNSD
ENSTTRP00000008410/1-644 GPAPQEPWPQ EAGSVLSDDG ASSDLDLDQL MEDVGEELEQ REEPQHRDDA
ENSBTAP00000001417/1-644 GPE-----PQ HAGSVPSDDG ASSDLDLDQL MEDVGEELEQ REEPQHRVDR
bmy_16104T0/1-603 GPAPQEPRPQ EAGSVPSDNG ASSDLDLDQL MADVGEEPEQ REEPQHRDDT
BACU012082/1-570 GPAPQEPRPQ EAGSVPSDDG ASSDLDLEQL MADVGEEPEQ REEPEHRDDA
701 750
ENSP00000381109/1-648 GEDFPVALFG K
ENSTTRP00000008410/1-644 GE-LAVTFCE E
ENSBTAP00000001417/1-644 GE-LAVAFCE E
bmy_16104T0/1-603 GE-LAVASCE E
BACU012082/1-570 GG-LAVASCE E