KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:14:15 2014 Check: 00 .. Name: ENSP00000381109/1-648 Len: 711 Check: 3262 Weight: 1.00 Name: ENSTTRP00000008410/1-644 Len: 711 Check: 1793 Weight: 1.00 Name: ENSBTAP00000001417/1-644 Len: 711 Check: 1802 Weight: 1.00 Name: bmy_16104T0/1-603 Len: 711 Check: 5668 Weight: 1.00 Name: BACU012082/1-570 Len: 711 Check: 455 Weight: 1.00 // 1 50 ENSP00000381109/1-648 --MMTTLQNK ---------- ---------- ---------- ---------- ENSTTRP00000008410/1-644 --MMTTLQSK ---------- ---------- ---------- ---------- ENSBTAP00000001417/1-644 --MMPTLESK ---------- ---------- ---------- ---------- bmy_16104T0/1-603 MAEITQLRRR RSRFQLRMRL SPASTPPVGV EISTFVIVEE NTSPETEEQR BACU012082/1-570 --MITFLS-- ---------- ---------- ---------- ---------- 51 100 ENSP00000381109/1-648 ----EECGKG PKRIFAPPAQ KSYSLLPCSP NSPKEETPGI SSPETEARIS ENSTTRP00000008410/1-644 -----ECGKG PKKTFAPPAQ KLHSLMPYNL NSSKEEILGI SSPEAETRPS ENSBTAP00000001417/1-644 ----EKCGKG PKYTFAPPAQ KLHSLMSYNL NSSKEEILEI SSPQAEVRPS bmy_16104T0/1-603 LDLSDKCGKG PKKTFAPPAQ KLHSLMPCNL NSSKEDILGI SSPEAETRPS BACU012082/1-570 -----ECGKG PKKTFAPPAQ KLQSLMPCNL NSSKEEILGI SSPEAETRPS 101 150 ENSP00000381109/1-648 LPKASLK--K KEEKATMKNV PSREQEKKRK AQINKQAEKK EKEKSSLTNA ENSTTRP00000008410/1-644 LLKARLE--K KKEKTTKENG TSSGQEIKGK AQDSKKAEKK EKGKSTLTNA ENSBTAP00000001417/1-644 LLKAGLEKKK KKKKTTTENG PGNGQEIQGK AQDSKNA-KK EKEKSTLTNA bmy_16104T0/1-603 LLKARLE--K KKEKTTKENG TGSGQEIKGK AQDNKKAEKK EKGKSTLTNA BACU012082/1-570 LLKARLE--K KKEKTTKENG TGSGQEIKGR AQDNKKAEKK EKGKSTLTNA 151 200 ENSP00000381109/1-648 EFEEIVQIVL QKSLQECLGM GSGLDFAETS CAQPVVSTQS DKEPGITAS- ENSTTRP00000008410/1-644 EFEEIVQIVL QKSLQECLXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXX- ENSBTAP00000001417/1-644 EFEEIVQIVL QKSFQECLE- --------TS CTQPTRCTQL DKEPGIASSN bmy_16104T0/1-603 EFEEIVQIVL QKSLQECLA- --------TS CAQPTRCTQL DKEPGIASS- BACU012082/1-570 EFEEIVQIVL QKSLQECLGM ESSLDFAETS CAQPTRCTQL DKEPGIASS- 201 250 ENSP00000381109/1-648 ATDTDNANGE EV--PHTQEI SVSWEGEAAP EIRTSKLGQP DPAPSKKKSN ENSTTRP00000008410/1-644 XXXXXXXXXE RVVVPHILEI SASQEGGN-P EIKTSKPGQP DPAPSEKKFN ENSBTAP00000001417/1-644 TSDNNNADGD RVVVPPILEI SASQEDGIIP EIKISKPGQP DSASSEKKFN bmy_16104T0/1-603 TTDNNNADGE RVVVPHILEI SASQEGGVIP EIKTSKPGQP DPAPSEKKFN BACU012082/1-570 TTDNNNADGE RVVVPHILEI SASQEGGVIP EIKTSKPGQP DPAPSEKKFN 251 300 ENSP00000381109/1-648 RLTLSKRKKE A-HEKVEKTQ GGHEHRQEDR LKKTVQDHSQ IRDQQKGEIS ENSTTRP00000008410/1-644 KLSLSKRKKA --HEKMEKAQ SGHEHRQKDQ LKKTVQDHSQ IRDQQKGEGS ENSBTAP00000001417/1-644 KLSLSKRKKE AQDEKMEKDQ SGHEHRQDDQ HKKTIQDHSQ NRDQQKGEGS bmy_16104T0/1-603 KLSLSKRKKA AQDEKMEKAQ SGHEHKQKDQ LKKTVQDHSQ IRDQQKGEGS BACU012082/1-570 KLSLSKRKKA AQDEKMEKAQ SGHEHKQKDQ LKKTVQDHSQ IRDQQKGEGS 301 350 ENSP00000381109/1-648 GFGQCLVWVQ CSFPNCGKWR RLCGNIDPSV LPDNWSCDQN TDVQYNRCDI ENSTTRP00000008410/1-644 GFXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXLEYNHCDI ENSBTAP00000001417/1-644 GFGQCLVWVQ CSSPNCEKWR RLRGNIDPSV LPDNWSCDQN TDLQYNRCDI bmy_16104T0/1-603 GFGQCLVWVQ CSSPNCEKWR RLRGNIDPSV LPDNWSCDQN TDLEYNHCDI BACU012082/1-570 GFGQCLVWVQ CSSPNCEKWR RLRGNIDPSV LPDNWSCDQN TDLEYNHCDI 351 400 ENSP00000381109/1-648 PEETWTGLES DVAYASYIPG SIIWAKQYGY PWWPGMIESD PDLGEYFLFT ENSTTRP00000008410/1-644 PEETWTGHEN EVAYASYIPG SIIWAKQYGY PXXXGMV-SD PDLGEYFLFA ENSBTAP00000001417/1-644 PEETWTGHES DVAYASYIPG SIIWAKQYGY PWWPGMVEPD PDLGEYFLFA bmy_16104T0/1-603 PEETWTGHES EVAYASYIPG SIIWAKQYGY PWWPGMVESD PDLGEYFLFA BACU012082/1-570 PEETWTGHES EVAYASYVPG SIIWAKQYGY PWWPGMVESD PDLGEYFLFA 401 450 ENSP00000381109/1-648 SHLDSLPSKY HVTFFGETVS RAWIPVNMLK NFQELSLELS VMKKRRN-DC ENSTTRP00000008410/1-644 SHLDSLPSKY HVTFFGETVS RAWIPVNMLK NFQELSLELA AVKKCKNKDF ENSBTAP00000001417/1-644 SHLDSLPSKY HVTFFGETVS RAWIPVNMLK NFQELTLELS GVRKCKNKDC bmy_16104T0/1-603 SHLDSLP--- ---------- ---------- ---------- --KKCRSKDC BACU012082/1-570 SHLDSLP--- ---------- ---------- ---------- --KKCRSKDC 451 500 ENSP00000381109/1-648 SQKLGVALMM AQEAEQISIQ ERVNLFGFWS RFNGSNSNGE RKDLQLSGLN ENSTTRP00000008410/1-644 SQKLGAALMM AQEAEQISIQ ERVNLFGFWS RYSGSDYSGE GKDVMLSGAN ENSBTAP00000001417/1-644 SQKLLVALMM AQKAEQISIQ ERVNLFGFWS RYSGPDNDGE EKDLALSGTS bmy_16104T0/1-603 SQELGAALMM AQEAEQISIQ ERVNLFGFWS RYSGSDNSGE GKDVMLSGAN BACU012082/1-570 SQKLGAALMM AQEAEQINIQ ERVNLFGFWS RYSGSDNSGE GKDVMLSGAN 501 550 ENSP00000381109/1-648 SPGSCLEKKE KEEELE---- ----KEEGEK TDPILPIRKR VKIQTQKTKP ENSTTRP00000008410/1-644 SLDSCLEKEE EESELEEE-- ----EEE--- -DPTLPGPKP AKIQTKKPKA ENSBTAP00000001417/1-644 SLDSCLEKEE KEPELEEDG- ----EEERDK ADPTLLNPKP AKIQTKKPKT bmy_16104T0/1-603 SLDSCLEKEE EESELEEE-- ----EEEQQK KDPTLPGPKP AKIQTKKPKA BACU012082/1-570 SLDSCLEKEE EESELEEESE LEEEEEEQQK KDPTLPGPKP AKIQTKKPKE 551 600 ENSP00000381109/1-648 RGL--GGDAG TADGRGRTLQ RKIMKRSLGR KSTAPPAPRM GRKEGQGNSD ENSTTRP00000008410/1-644 RGV--GGDAG GAHGRDGTPQ RKTMKRSLGN ESAAPSLPIM GKKKGHGNSE ENSBTAP00000001417/1-644 RGLGVGSDAG GADERDGTLK RRTTKRPLLN EPAPPPVPIM GRTKGHGNSG bmy_16104T0/1-603 RG-------- GAHGRDGIPQ RKTMKRSLGN ESAAPPLPIM GGKKGHGNS- BACU012082/1-570 RG-------- ---------- ---------- ---------- ---------- 601 650 ENSP00000381109/1-648 SDQPGPKKKF KAPQSKALAA SFSEGKEVRT VPKNLGLSAC KGACPSSAKE ENSTTRP00000008410/1-644 PEQPGPKKKF KAPQSKAPVS SSSEEKEARI VPEVLTPPAP PGACPVLGKK ENSBTAP00000001417/1-644 SEQPDPKKKF KAPQSKAPVS SLSEEKEARL VPEVLIAPAP CGACHVVGEE bmy_16104T0/1-603 ---------- ---------- ---------- ---------- ---EP--EQP BACU012082/1-570 -----PKKKF KAPQSKAPVS DSSEEKEARI VPEVLTPPAP PGACPMVGKE 651 700 ENSP00000381109/1-648 EPRHREPLTQ EAGSVPLEDE ASSDLDLEQL MEDVGRELGQ SGELQHSNSD ENSTTRP00000008410/1-644 GPAPQEPWPQ EAGSVLSDDG ASSDLDLDQL MEDVGEELEQ REEPQHRDDA ENSBTAP00000001417/1-644 GPE-----PQ HAGSVPSDDG ASSDLDLDQL MEDVGEELEQ REEPQHRVDR bmy_16104T0/1-603 GPAPQEPRPQ EAGSVPSDNG ASSDLDLDQL MADVGEEPEQ REEPQHRDDT BACU012082/1-570 GPAPQEPRPQ EAGSVPSDDG ASSDLDLEQL MADVGEEPEQ REEPEHRDDA 701 750 ENSP00000381109/1-648 GEDFPVALFG K ENSTTRP00000008410/1-644 GE-LAVTFCE E ENSBTAP00000001417/1-644 GE-LAVAFCE E bmy_16104T0/1-603 GE-LAVASCE E BACU012082/1-570 GG-LAVASCE E