KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:14:16 2014 Check: 00 .. Name: ENSP00000269305/1-393 Len: 401 Check: 4243 Weight: 1.00 Name: ENSBTAP00000001420/1-386 Len: 401 Check: 7025 Weight: 1.00 Name: BACU001233/1-393 Len: 401 Check: 4137 Weight: 1.00 Name: bmy_01732T0/1-352 Len: 401 Check: 6063 Weight: 1.00 Name: ENSTTRP00000009721/1-387 Len: 401 Check: 9654 Weight: 1.00 // 1 50 ENSP00000269305/1-393 MEEPQSDPSV EPPLSQETFS DLWKLLPENN VLSPLPSQAM DDLMLSPDDI ENSBTAP00000001420/1-386 MEESQAELNV EPPLSQETFS DLWNLLPENN LLSSELSAPV DDL-LPYTDV BACU001233/1-393 MEESQAELGV EPPLSQESFS DLWKLLPENN LLSSELSPAV DDLLLSPEDV bmy_01732T0/1-352 MEESQAELGV EPPLSQETFS DLWKLLPENN LLSSELSPAV DDLLLSPEDV ENSTTRP00000009721/1-387 MEELQAELGV EPPLSQETFS DLWKLLPENN LLSSELSPAV DDLLLSPEDV 51 100 ENSP00000269305/1-393 EQWFTEDPGP DEAPRMPEAA PPVAPAPAAP TPAAPAPAPS WPLSSSVPSQ ENSBTAP00000001420/1-386 ATWL--DECP NEAPQMPE-- ---PSAPAAP PPATPAPATS WPLSSFVPSQ BACU001233/1-393 ANWL--DERP DEAPQMPE-- ---PTAPAAP APAAPAPATS WPLSSFVPSQ bmy_01732T0/1-352 ANWL--DERP DEAPQMPE-- ---PPALAAP APAAPAPATS WPLSSFVPSQ ENSTTRP00000009721/1-387 ANWL--DERP DEAPQMPE-- ---PPAPAAP TPAAPAPATS WPLSSFVPSQ 101 150 ENSP00000269305/1-393 KTYQGSYGFR LGFLHSGTAK SVTCTYSPAL NKMFCQLAKT CPVQLWVDST ENSBTAP00000001420/1-386 KTYPGNYGFR LGFLQSGTAK SVTCTYSPSL NKLFCQLAKT CPVQLWVDSP BACU001233/1-393 KTYPGSYGFR LGFLHSGTAK SVTCTYSPAL NKLFCQLAKT CPVQLWVSSP bmy_01732T0/1-352 KTYPGSYGFR LGFLHSGTAK SVTCTYSPAL NKLFCQLAKT CPVQLWVSSP ENSTTRP00000009721/1-387 KTYPGSYGFR LGFLHSGTAK SVTCTYSPPL NKLFCQLAKT CPVQLLVSSP 151 200 ENSP00000269305/1-393 PPPGTRVRAM AIYKQSQHMT EVVRRCPHHE RCSD-SDGLA PPQHLIRVEG ENSBTAP00000001420/1-386 PPPGTRVRAM AIYKKLEHMT EVVRRCPHHE RSSDYSDGLA PPQHLIRVEG BACU001233/1-393 PPPGTRVRAM AIYKKSEYMT EVVRRCPHHE RCSDYSDGLA PPQHLIRVEG bmy_01732T0/1-352 PPPGTRVRAM AIYKKSEYMT EVVRRCPHHE RCSDYSDGLA PPQHLIRVEG ENSTTRP00000009721/1-387 PPPGTRVRAM AIYKKSEYMT EVVRRCPHHE RCSDYSDGLA PPQHLIRVEG 201 250 ENSP00000269305/1-393 NLRVEYLDDR NTFRHSVVVP YEPPEVGSDC TTIHYNYMCN SSCMGGMNRR ENSBTAP00000001420/1-386 NLRAEYLDDR NTFRHSVVVP YESPEIDSEC TTIHYNFMCN SSCMGGMNRR BACU001233/1-393 NLRAEYLDDR HTFRHSVVVP YEPPEVGSDC TTIHYNFMCN SSCMGGMNRR bmy_01732T0/1-352 NLRAEYLDDR NTFRHSVVVP YEPPEV---- ---------- --C------- ENSTTRP00000009721/1-387 NLRAEYLDDR HTFRHSVVVP YEPPEVGSDC TTIHYNFMCN SSCMGGMNRR 251 300 ENSP00000269305/1-393 PILTIITLED SSGNLLGRNS FEVRVCACPG RDRRTEEENL RKKGEPHHEL ENSBTAP00000001420/1-386 PILTIITLED SCGNLLGRNS FEVRVCACPG RDRRTEEENL RKKGQSCPEP BACU001233/1-393 PILTIITLED SSGNLLGRNS FEVRVCACPG RDRRTEEENF RKKGQSGPEP bmy_01732T0/1-352 ---------- --GNLLGRNS FEVRVCACPG RDRRTEEENF HKKGQSGPEP ENSTTRP00000009721/1-387 PILTIITLED SNGNLLGRNS FEVRVCACPG RDRRTEEENF RKKGQSCPEL 301 350 ENSP00000269305/1-393 PPGSTKRALP NNTSSSPQPK KKPLDGEYFT LQIRGRERFE MFRELNEALE ENSBTAP00000001420/1-386 PPRSTKRALP TNTSSSPQPK KKPLDGEYFT LQIRGFKRYE MFRELNDALE BACU001233/1-393 PPGSAKRALP TSTSSSPPQK KKPLDGEYFT LQIRGRERFE MFRELNEALE bmy_01732T0/1-352 PPGSAKRALP TSTSSSPPQK KKPLDGEYFT LQIRGRERFE MFRELNEALE ENSTTRP00000009721/1-387 PTGSAKRALP TSTSSSPPQK KKPLDGEYFT LQIRGRERFE MFRELNEALE 351 400 ENSP00000269305/1-393 LKDAQAGKEP GGSRAHSSHL KSK---KGQS TSRHKKLM-- --FKTEGPDS ENSBTAP00000001420/1-386 LKDALDGREP GESRAHSSHL KSK---KRPS PSCHKKPM-- --LKREGPDS BACU001233/1-393 LKDAQAGREL GESRAHSRPF KAQVQEEGPR ASQSDDVISP PPLSSQPPEV bmy_01732T0/1-352 LKDAQAGKEP GESRAHSSHL KSK---KGQS PSRHKKLM-- --FKREGPDS ENSTTRP00000009721/1-387 LKDAQAGKEP GESRAHSSHL KSK---KGPS PSRHKKLM-- --FKREGPDS 401 450 ENSP00000269305/1-393 D ENSBTAP00000001420/1-386 D BACU001233/1-393 - bmy_01732T0/1-352 D ENSTTRP00000009721/1-387 D