KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:14:16 2014 Check: 00 .. Name: ENSP00000324203/1-548 Len: 549 Check: 5732 Weight: 1.00 Name: ENSBTAP00000001421/1-540 Len: 549 Check: 3790 Weight: 1.00 Name: bmy_01731T0/1-521 Len: 549 Check: 350 Weight: 1.00 Name: ENSTTRP00000009726/1-540 Len: 549 Check: 3112 Weight: 1.00 // 1 50 ENSP00000324203/1-548 MKTLETQPLA PDCCPSDQDP APAHPSPHAS PMNKNADSEL MPPPPERGDP ENSBTAP00000001421/1-540 MKTPEAPPLA PDCLPSDQAP APARLSHQAS PMDKNTDPEL MPTPRDGDDP bmy_01731T0/1-521 MKTPEAPLFA PDCLPSDRAP APAPLSPQAS PMDKNTDPEL MPPTPDGDDP ENSTTRP00000009726/1-540 MKTPEAPLLA PDCFPSDRAP APAPLSPQAS PMDKNTDPEL MPPTPDGDDP 51 100 ENSP00000324203/1-548 PRLSPDPVAG SAVSQELREG DPVSLSTPLE TEFGSPSELS PRIEEQELSE ENSBTAP00000001421/1-540 PQVSSDPMVG LALSQELEEG VPASLPTPLE SGFGSPSELS SRVEEKELSE bmy_01731T0/1-521 PRVSPDPMAV SAVSQELEEG DPASLSIPLE TGFGIPSGLS PRVEEQELSE ENSTTRP00000009726/1-540 PRVSPDPMAV SAVSQELEEG DPASLSIPLE TGFGIPSELS PRVEEQELSE 101 150 ENSP00000324203/1-548 NTSLPAEEAN GSLSEEEANG PELGSGKAME DTSGEPAAED EGDTAWNYSF ENSBTAP00000001421/1-540 NVSLPA---- -----EETNR PELGPGEDVE GVSEELTPED EGYTIWNYNF bmy_01731T0/1-521 NVSLPA---- -----EETNR PELGPGEDVE GVSEEPAPED EGYTVWNYSF ENSTTRP00000009726/1-540 NVSLPA---- -----EETNR PELGPGEDVE GVSEEPAPED EGYTVWSYSF 151 200 ENSP00000324203/1-548 SQLPRFLSGS WSEFSTQPEN FLKGCKWAPD GSCILTNSAD NILRIYNLPP ENSBTAP00000001421/1-540 SQVPRFLSGS WSEFITQPEN FLKGCKWAPD GSCILTNSAD NILRIYNLPP bmy_01731T0/1-521 SQVPRFLSGS WSEFSTQPEN FLKGCKWAPD GSCILTNSAD NILRIYNLPP ENSTTRP00000009726/1-540 SQVPRFLSGS WSEFSTQPEN FLKGCKWAPD GSCILTNSAD NILRIYNLPP 201 250 ENSP00000324203/1-548 ELYHEGEQVE YAEMVPVLRM VEGDTIYDYC WYSLMSSAQP DTSYVASSSR ENSBTAP00000001421/1-540 ELYNEGEQLE YAEMAPVLRM VEGDTIYDYC WYSLMSSAQP DTSYVASSSR bmy_01731T0/1-521 ELYNEGEQLE YAEM------ ---------H W----GLSVR VSLSVASSSR ENSTTRP00000009726/1-540 ELYNEGEQLE YAEMAPVLRM VEGDTIYDYC WYSLMSSAQP DTSYVASSSR 251 300 ENSP00000324203/1-548 ENPIHIWDAF TGELRASFRA YNHLDELTAA HSLCFSPDGS QLFCGFNRTV ENSBTAP00000001421/1-540 ENPIHIWDAF TGELRASFRS YNHLDELTAA HSLCFSPDGS QLFCGFNRTV bmy_01731T0/1-521 ENPIHIWDAF TGELRASFRS YNHLDELTAA HSLCFSPDGS QLFCGFNRTV ENSTTRP00000009726/1-540 ENPIHIWDAF TGELRASFRS YNHLDELTAA HSLCFSPDGS QLFCGFNRTV 301 350 ENSP00000324203/1-548 RVFSTARPGR DCEVRATFAK KQGQSGIISC IAFSPAQPLY ACGSYGRSLG ENSBTAP00000001421/1-540 RVFSTSRPGR DCEVRTTFAK RQGQSGIISC IAFSPTQPLY ACGSYGRSLG bmy_01731T0/1-521 RIFSTSRPGR DCEVRATFAK KQGQSGIISC IAFSPTQPLY ACGSYGRSLG ENSTTRP00000009726/1-540 RIFSTSRPGR DCEVRATFAK KQGQSGIISC IAFSPTQPLY ACGSYGRSLG 351 400 ENSP00000324203/1-548 LYAWDDGSPL ALLGGHQGGI THLCFHPDGN RFFSGARKDA ELLCWDLRQS ENSBTAP00000001421/1-540 LYTWEDGSPL ALLGGHQGGI THLCFHPDGN CFFSGARKDA ELLCWDLRQL bmy_01731T0/1-521 LYTWDDGSPL ALLGGHQGGI THLCFHPDGN RFFSGARKDA ELLCWDLRQP ENSTTRP00000009726/1-540 LYTWDDGSPL ALLGGHQGGI THLCFHPDGN RFFSGARKDA ELLCWDLRQP 401 450 ENSP00000324203/1-548 GYPLWSLGRE VTTNQRIYFD LDPTGQFLVS GSTSGAVSVW DTDGPGNDGK ENSBTAP00000001421/1-540 GHPLWSLSRE VTTNQRIYFD LDPTGQFLVS GSTSGAVSVW DTGGAGLESK bmy_01731T0/1-521 GRPLWSLSRE VTTNQRIYFD LDPSGQFLVT GSTSGAVSVW DTGGAGPEGK ENSTTRP00000009726/1-540 GRPLWSLSRE VTTNQRIYFD LDPSGQFLVS GSTSGAVSVW DTGAAGHEGR 451 500 ENSP00000324203/1-548 PEPVLSFLPQ KDCTNGVSLH PSLPLLATAS GQRVFPEPTE SGDEG-EELG ENSBTAP00000001421/1-540 PEPVLSFQPQ KDCTNGVSLH PSLPLLATAS GQRVFPEPTE SGDEREEEVD bmy_01731T0/1-521 PEPVLSFLPQ KDCTNGVSLH PSLPLLATGS GQRVFPEPTE SGDEGEEEVD ENSTTRP00000009726/1-540 PEPVLSFLPQ KDCTNGVSLH PSLPLLATGS GQRVFPEPTE SGDEGEEEVD 501 550 ENSP00000324203/1-548 LPLLSTRHVH LECRLQLWWC GGAPDSSIPD DHQGEKGQGG TEGGVGELI ENSBTAP00000001421/1-540 LPLLSMRHVH LECQLQLWWC GGGPDTSISD AHQEEMGQGR TEGGGGEFT bmy_01731T0/1-521 LPLLSMRHVH LECQLQLWWC GGGPDTSVPD AHQAEKGQGG TEGGGREFI ENSTTRP00000009726/1-540 LPLLSMRHVH LECQLQLWWC GGGPDTSVPD AHQEEKGQGG TEGGGREFI