KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:14:18 2014 Check: 00 .. Name: ENSTTRP00000002539/1-900 Len: 1036 Check: 1291 Weight: 1.00 Name: ENSP00000382518/1-473 Len: 1036 Check: 8100 Weight: 1.00 Name: ENSBTAP00000001429/1-853 Len: 1036 Check: 7892 Weight: 1.00 Name: bmy_02782T0/1-926 Len: 1036 Check: 1638 Weight: 1.00 Name: BACU009161/1-808 Len: 1036 Check: 6980 Weight: 1.00 // 1 50 ENSTTRP00000002539/1-900 ---------- MKALVLLC-- ---------- ---------C F--------- ENSP00000382518/1-473 ---------- MRALVLLG-- ---------- ---------C L--------- ENSBTAP00000001429/1-853 ---------- ---------- ---------- ---------- ---------- bmy_02782T0/1-926 MAEGVSGEKA EPVYAVLCLG HQPVRLRGLP MIAEAELGTC YSRTLSRARA BACU009161/1-808 ---------- MRALVLLC-- ---------- ---------C F--------- 51 100 ENSTTRP00000002539/1-900 ---------- ---------- ---------- ---------- ---------- ENSP00000382518/1-473 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001429/1-853 ---------- ---------- ---------- ---------- ---------- bmy_02782T0/1-926 AALTLAHTVR QSDPQSVQPG ITTIINTIKI TITIIIITTI ITIINTIKIT BACU009161/1-808 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000002539/1-900 VASLLLPGQA ELQVSASGGT EDVGSLLENH FSAGDPSLEE KERALQAEAS ENSP00000382518/1-473 LASLLFSGQ- ---------- ---------- ---------- ---------- ENSBTAP00000001429/1-853 ------SDHL ELQVSASGGT EDVGNLLENH FSAGDASLEE KERALRAEAA bmy_02782T0/1-926 ITTIIINNIN KLQVSASGGT EDVGSLLENH FSAGDASLEE KERALQAEAA BACU009161/1-808 VASLLLPGQA ELQVSASGGT EDVGSLLENH FSAGDASLEE KERALQAEAA 151 200 ENSTTRP00000002539/1-900 PGETNPLLHP TDGREAGGSE KTAAGAPATN RLGSDPEASL SKASASESAP ENSP00000382518/1-473 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001429/1-853 PGETRPLLHP SEGGEDGSSE KTAADGLSSD P-DPDPEASL SNASASESAA bmy_02782T0/1-926 PGETNLLLQP TDGREAGGSE KTAAGAPATN SLGSDPEASL CKASASESAS BACU009161/1-808 PGETNLLLHP TDGREAGGSE KTAAGAPATN GLGSDAEASL CKASASKSAS 201 250 ENSTTRP00000002539/1-900 PGEPAGSGEE DTGPPG-ASA LPPGGEGAPG -EEGAPEFSS GEGP-TEAEG ENSP00000382518/1-473 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001429/1-853 PGEPAGPGAE DAGPPGAASA LPPGREGEPG EEEGARELSS GEGPGQEAEG bmy_02782T0/1-926 PGEPAGSGEE DTGPPG-ASA LPPGGEAAPG -EEGAPELSS GEGPGQEAEG BACU009161/1-808 PGEPAGSGEE DTGPPG-ASA LPPGGEAAPG -EQGAPELSS GEGPGQEAEG 251 300 ENSTTRP00000002539/1-900 QAGSGEVSEE AAEALGDDPA QEAAAGXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000382518/1-473 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001429/1-853 PAGSGEVPEE AAEALGE--- --AAAGSPEP ENSEDSPSQE VETGGEGSPG bmy_02782T0/1-926 QAGSGEVPEE AAEALRDDPA QGAAAGPPEP EDSGDSPSKE VETGREGSPG BACU009161/1-808 QAGSGEVPEE AAEALRDDPA QGAAAGPPEP EDSGDSPSKE VETGGEGSPG 301 350 ENSTTRP00000002539/1-900 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000382518/1-473 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001429/1-853 PGLEPEVTDG AADVDAEAAQ RTEDQAEPSS ISAAAAEDAA A-----REEE bmy_02782T0/1-926 PGPEPELPDG VADLDAEAAE GAEDQGDPSP SPASDARAEV GGAQEDRPAE BACU009161/1-808 PGPEPELPDG VADLDAEAAE GAEDQGEPSP SPASDARAEV GGAQEDRPAE 351 400 ENSTTRP00000002539/1-900 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000382518/1-473 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001429/1-853 GGSREHPNEA SSEEEGGEES EEESGDEEDS GDAASSEEAG GASEEEEAEK bmy_02782T0/1-926 GMPEDHEDAA SYEEEGGEES ------EEDS GDGSSSEESG GASEEEEAGE BACU009161/1-808 GIPEDDEDAA SYEEEGGEES ------EEDS GDGSSSEESG GASEEEEAGE 401 450 ENSTTRP00000002539/1-900 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX X--------- ENSP00000382518/1-473 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001429/1-853 EAGEGAHAAA GSASPGEEGS PEESPEGADA QEPKEEGPQG RGVSRGCPPP bmy_02782T0/1-926 EVGEGAQEAA GSSSSGEEGA ---------- -RPSAEGSHL R--------- BACU009161/1-808 EVGEGPQEAA GSSSSGEEGP ---------- -RPSAEESH- ---------- 451 500 ENSTTRP00000002539/1-900 ---------- ---XXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000382518/1-473 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001429/1-853 PARHLDEADR DPQGGRPT-- ---------- ---------- ---------- bmy_02782T0/1-926 ---------- ---GGGGG-- ---------- ---------- ---------- BACU009161/1-808 ---------- ----AGPE-- ---------- ---------- ---------- 501 550 ENSTTRP00000002539/1-900 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000382518/1-473 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001429/1-853 ---------- ---------- ------AGVV GHRPQGVPGP LGASRLFLNH bmy_02782T0/1-926 ---------- ---------- -------GGV AAAP------ ----GIGAAA BACU009161/1-808 ---------- ---------- -------GAE AQEP------ ---------- 551 600 ENSTTRP00000002539/1-900 XXXXXXXXXX XXXXXXXXXX XXXXXXEAED VSEETPLRDR SHIEKTLMLN ENSP00000382518/1-473 ---------- ---------- ----AEETED ANEEAPLRDR SHIEKTLMLN ENSBTAP00000001429/1-853 LSPLQRDPLR ACTLEGPEEP DVCPAEEAED VSEEAPLRDR SHIEKTLMLN bmy_02782T0/1-926 VFPEVLCVGA GRDPHGGRAP SQPRVQEAED VSEEAPLRDR SHIEKTLMLN BACU009161/1-808 ---------- ---------K EEGPQEEAED VSEEAPLRDR SHIEKTLMLN 601 650 ENSTTRP00000002539/1-900 EDKPTDDYS- -------VVL QRLRKI-HSS IKPLEQSYKY NELRQHEITD ENSP00000382518/1-473 EDKPSDDYS- -------AVL QRLRKIYHSS IKPLEQSYKY NELRQHEITD ENSBTAP00000001429/1-853 EDKPADDFS- -------VVL QRLRKIYHSS IKPLEQSYKY NELRQHEITD bmy_02782T0/1-926 EDKPTDDFSG NQGQELGVVL QRLRKIYHSS IKPLEQSYKY NELRQHEITD BACU009161/1-808 EDKPTDDFFG NQGQRLGVVL QRLRKIYHSS IKPLEQSYKY NELRQHEITD 651 700 ENSTTRP00000002539/1-900 GEITSKPMVL FLGPWSVGKS TMINYLLGLE NTRYQLYTGA EPTTSEFTVL ENSP00000382518/1-473 GEITSKPMVL FLGPWSVGKS TMINYLLGLE NTRYQLYTGA EPTTSEFTVL ENSBTAP00000001429/1-853 GEITSKPMVL FLGPWSVGKS TMINYLLGLE NTRYQLYTGA EPTTSEFTVL bmy_02782T0/1-926 GEITSKPMVL FLGPWSVGKS TMINYLLGLE NTRYQLYTGA EPTTSEFTVL BACU009161/1-808 GEITSKPMVL FLGPWSVGKS TMINYLLGLE NTRYQLYTGA EPTTSEFTVL 701 750 ENSTTRP00000002539/1-900 MHGPKLKTIE GIVMAADSAR SFSPLEKFGQ NFLEKLIGIE VPHKLLERVT ENSP00000382518/1-473 MHGPKLKTIE GIVMAADSAR SFSPLEKFGQ NFLEKLIGIE VPHKLLERVT ENSBTAP00000001429/1-853 MHGPKLKTIE GIVMAADSAR SFSPLEKFGQ NFLEKLIGIE VPHKLLERVT bmy_02782T0/1-926 MHGPKLKTIE GIVMAADSAR SFSPLEKFGQ NFLEKLIGIE VPHKLLERVT BACU009161/1-808 MHGPKLKTIE GIVMAADSAR SFSPLEKFGQ NFLEKLIGIE VPHKLLERVT 751 800 ENSTTRP00000002539/1-900 FVDTPGIIEN RKQQERGYPF NDVCQWFIDR ADLIFVVFDP TKLDVGLELE ENSP00000382518/1-473 FVDTPGIIEN RKQQERGYPF NDVCQWFIDR ADLIFVVFDP TKLDVGLELE ENSBTAP00000001429/1-853 FVDTPGIIEN RKQQERGYPF NDVCQWFIDR ADLIFVVFDP TKLDVGLELE bmy_02782T0/1-926 FVDTPGIIEN RKQQERGYPF NDVCQWFIDR ADLIFVVFDP TKLDVGLELE BACU009161/1-808 FVDTPGIIEN RKQQERGYPF NDVCQWFIDR ADLIFVVFDP TKLDVGLELE 801 850 ENSTTRP00000002539/1-900 MLFRQLKGRE SQIRIILNKA DNLAMQMLMR VYGALFWSLA PLINVTEPPR ENSP00000382518/1-473 MLFRQLKGRE SQIRIILNKA DNLATQMLMR VYGALFWSLA PLINVTEPPR ENSBTAP00000001429/1-853 MLFRQLKGRE SQIRIILNKA DNLATQMLMR VYGALFWSLA PLINVTEPPR bmy_02782T0/1-926 MLFRQLKGRE SQIRIILNKA DNLAMQMLMR VYGALFWSLA PLINVTEPPR BACU009161/1-808 MLFRQLKGRE SQIRIILNKA DNLAMQMLMR VYGALFWSLA PLINVTEPPR 851 900 ENSTTRP00000002539/1-900 VYVSSFWPYD YKPDTHWDLF LREEISLLED LNQVIENRLE NKIAFIRQHA ENSP00000382518/1-473 VYVSSFWPQE YKPDTHQELF LQEEISLLED LNQVIENRLE NKIAFIRQHA ENSBTAP00000001429/1-853 VYVSSFWPYD YKPDTHRDLF LREEISLLED LNQVIENRLE NKIAFIRQHA bmy_02782T0/1-926 VYVSSFWPYD YKPDTHRDLF LREEISLLED LNQVIENRLE NKIAFIRQYA BACU009161/1-808 VYVSSFWPYD YKPDTHRDLF LREEISLLED LNQVIENRLE NKIAFIRQYA 901 950 ENSTTRP00000002539/1-900 IRVRIHALLV DRYLQTYKDK MTFFSDGELV FKDIVEDPDK FYIFKTILAK ENSP00000382518/1-473 IRVRIHALLV DRYLQTYKDK MTFFSDGELV FKDIVEDPDK FYIFKTILAK ENSBTAP00000001429/1-853 IRVRIHALLV DRYLQTYKEK MTFFSDGELV FKDIVEDPDK FYIFKTILAK bmy_02782T0/1-926 IRVRIHALLV DRYLQTYKDK MTFFSDGELV FKDIVEDPDK FYIFKTILAK BACU009161/1-808 IRVRIHALLV DRYLQTYKDK MTFFSDGELV FKDIVEDPDK FYIFKTILAK 951 1000 ENSTTRP00000002539/1-900 TNVSKFDLPN REAYKDFFGI NPISSFKLLS QQCSYMGGCF LDKIERAITQ ENSP00000382518/1-473 TNVSKFDLPN REAYKDFFGI NPISSFKLLS QQCSYMGGCF LEKIERAITQ ENSBTAP00000001429/1-853 TNVSKFDLPH REAYKDFFGI NPISSFKLLS QQCSYMGGCF LDKIERAITQ bmy_02782T0/1-926 TNVSKFDLPN REAYKDFFGI NPISSFKLLS QQCSYMGGCF LDKIERAITQ BACU009161/1-808 TNVSKFDLPN REAYKDFFGI NPISSFKLLS QQCSYMGGCF LDKIERAITQ 1001 1050 ENSTTRP00000002539/1-900 ELPSLLGSLG LGKNPGALNC DKTG------ ------ ENSP00000382518/1-473 ELPGLLGSLG LGKNPGALNC DKTGCSETPK NRYRKH ENSBTAP00000001429/1-853 ELPSLLGSLG LGKNPGALNC DKTGCGETPK NRYKKP bmy_02782T0/1-926 ELPSLLGSLG LGKNPGALNC DKTGCGETPK NRYRKP BACU009161/1-808 ELPSLLGSLG LGKNPGALNC DKTGCGETPK NRYRKP