KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:14:20 2014 Check: 00 .. Name: ENSTTRP00000005963/1-1101 Len: 1261 Check: 9168 Weight: 1.00 Name: ENSBTAP00000001432/1-1156 Len: 1261 Check: 5349 Weight: 1.00 Name: ENSP00000425556/1-1123 Len: 1261 Check: 8974 Weight: 1.00 Name: bmy_20729T0/1-603 Len: 1261 Check: 1344 Weight: 1.00 Name: BACU015213/1-595 Len: 1261 Check: 4020 Weight: 1.00 // 1 50 ENSTTRP00000005963/1-1101 MSDMSSRDSF YDSLSDVAED GENADFLPGL SAFLSQEEIN KSLDLARRAI ENSBTAP00000001432/1-1156 MSETSSHDSF YDSLSDLLED SENAAFFPGL SAFLSQEEIH KSLDLARRAI ENSP00000425556/1-1123 MSGTSSHESF YDSLSDMQEE SKNTDFFPGL SAFLSQEEIN KSLDLARRAI bmy_20729T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU015213/1-595 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000005963/1-1101 ANSETEDCDS EREDSQIFSP SPGSLWGSPP PQGAGPGEHL SPGTPGAHKP ENSBTAP00000001432/1-1156 ASSETDDCDC E-EVPQCCSP SPRSRRKPPA PPEVRPGDHA SPGTPGARRR ENSP00000425556/1-1123 ADSETEDFDS EKEISQIFST SPASLCEHPS HKETKLGEHA SR-RPQDNRS bmy_20729T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU015213/1-595 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000005963/1-1101 TPVPPLPAER AERISSPASR RKPGVSPLLA RPSYIRSLRR AGQHG--AKA ENSBTAP00000001432/1-1156 VPAAPPPAEQ AEHISSPASR RKPGVSPLLA RPSYIRSLRK AGKQV--AKT ENSP00000425556/1-1123 TPVQPLAEKQ TKSISSPVSK RKPAMSPLLT RPSYIRSLRK AEKRG--AKT bmy_20729T0/1-603 ---------- ---------- ---------- -------MRK S--------- BACU015213/1-595 ---------- ---------- --------MT RFDVVLVYRR SPVVGLRATV 151 200 ENSTTRP00000005963/1-1101 PSASAKPRAT HGGRAGPQSP LCNKAATLIE ELTAIFRETS KPRTRNPNGE ENSBTAP00000001432/1-1156 PGTTAKPRAT RPGRAGPQSP LNDKAATLIE ELTSIFREAA KPRTRSPDGE ENSP00000425556/1-1123 PSTNVKPKTP HQRKGGPQSQ LCDKAANLIE ELTSIFK-AA KPRNRSPNGE bmy_20729T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU015213/1-595 PGSGDVELES HPRDKRTLRA LSVKAAQVVG GTLTSAA-RR QRCRRRPS-- 201 250 ENSTTRP00000005963/1-1101 SSSPDSGYLS PKNQLSAPMS ASASRSPTGD AE--VEAGAE PGAGHHPAAA ENSBTAP00000001432/1-1156 SSSPDSGYLS PKNQPSDPRS ASASRSPTRD QQDVEAEARP PEPRHHHPVA ENSP00000425556/1-1123 SSSPDSGYLS PKNQPSALLS ASASQSPMED QGEMEREVKS PGARHCYQDN bmy_20729T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU015213/1-595 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000005963/1-1101 RDVVQPSR-- -SPLPRLPDH LLAAPRFIQK LRSQEVAEGS RVYLECRVVG ENSBTAP00000001432/1-1156 QDLARPSHSP SSPPPRSAHH PPAAPRFIQK LRSQEVAEGS RVHLECRVTG ENSP00000425556/1-1123 QDLAVPHNRK SHPQPHSALH FPAAPRFIQK LRSQEVAEGS RVYLECRVTG bmy_20729T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU015213/1-595 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000005963/1-1101 NPPPRVRWFC EGIELHDSPD IQIRWDGGDL HTLVIAEAFE DDTGRYTCLA ENSBTAP00000001432/1-1156 NPPPRVRWFC EGSELHSSPD IQILWDGGDL HTLVIAEAFE DDTGRYTCLA ENSP00000425556/1-1123 NPTPRVRWFC EGKELHNTPD IQIHCEGGDL HTLIIAEAFE DDTGRYTCLA bmy_20729T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU015213/1-595 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000005963/1-1101 ANPGGSDTTS AEVFIEGASS TDSDSESLAF KSKPGAMPQA QKKTTSVSLT ENSBTAP00000001432/1-1156 ANSSGSDSTS AEVFIEGASS TDSDSESLAF RSKPGAMPQA QKKTTSVSLT ENSP00000425556/1-1123 TNPSGSDTTS AEVFIEGASS TDSDSESLAF KSRAGAMPQA QKKTTSVSLT bmy_20729T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU015213/1-595 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000005963/1-1101 IGSSSPKTGV TTAVIQPLSV PVQQAPSPTS CLCRPDGPTA ACFPPVFTKE ENSBTAP00000001432/1-1156 IGSSSPKSGV TTAVIQPLSV PVQQAPSPTL FLCRPDGPTA ACLPPVFTKE ENSP00000425556/1-1123 IGSSSPKTGV TTAVIQPLSV PVQQVHSPTS YLCRPDGTTT AYFPPVFTKE bmy_20729T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU015213/1-595 ---------- ---------- ---------- ---------- ---------D 451 500 ENSTTRP00000005963/1-1101 LQSISASKGQ AAVLECRVRG TPPLXXXXXX XXXXXXXXXX XXXXXXXPRS ENSBTAP00000001432/1-1156 LQNICASEGQ VVVLECRVRG TPPLQVCWFR QGSEIQDSPD FRILQKKPRS ENSP00000425556/1-1123 LQNTAVAEGQ VVVLECRVRG APPLQVQWFR QGSEIQDSPD FRILQKKPRS bmy_20729T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU015213/1-595 FRNKAILKGS IP-------- ---------- ---------- ---------- 501 550 ENSTTRP00000005963/1-1101 TAEPEEICTL VIAETFPEDA GIFTCSASND YGSATSTAQL VVTSANMDAC ENSBTAP00000001432/1-1156 TAEPEEICTL VIAETFPEDA GIFTCSASND YGSAASTAQL VVTSASTDAC ENSP00000425556/1-1123 TAEPEEICTL VIAETFPEDA GIFTCSARND YGSATSTAQL VVTSANTENC bmy_20729T0/1-603 ---------- ----VLPETL LMVSC----- ---------- ---------- BACU015213/1-595 ---------- VVYDVILLVL LMFST----- ---------- ---------- 551 600 ENSTTRP00000005963/1-1101 SYDSAGEASS GRFQPSPLPP PIWDTGSFEL ASQKPAEIQH VTGPVFGLSP ENSBTAP00000001432/1-1156 GYDSAGESGS GHF---PLPS PLWEASPFEL VAQKPAEAPP KSGPESGLSS ENSP00000425556/1-1123 SYESMGESNN DHFQHFPPPP PILETSSLEL ASKKPSEIQQ VNNPELGLSR bmy_20729T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU015213/1-595 ---------- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000005963/1-1101 TALQ-QF-AA ERETNGVHPG HGVNGLMNGR ADGSKALPSA AVLLSPTKEP ENSBTAP00000001432/1-1156 --------AS DREATCVHPA RGVNGMVNGR AEGGTALPSP PALLSPVKEP ENSP00000425556/1-1123 AALQMQFNAA ERETNGVHPS RGVNGLINGK ANSNKSLPTP AVLLSPTKEP bmy_20729T0/1-603 ---------- ----GGG--- ---------- ---------- ---------- BACU015213/1-595 --LSIFFKEH TKGQNEK--- ---------- ---------- ---------- 651 700 ENSTTRP00000005963/1-1101 PPLLAKPKLG FPKKASRTAR IASDEEIQGS KDAVIQDLER KLRFKEDLLN ENSBTAP00000001432/1-1156 PPLLAKPKLG LPKKASRPAR MASDEEIQGS KDAVIQDLER KLRFKEDLLN ENSP00000425556/1-1123 PPLLAKPKLG FPKKASRTAR IASDEEIQGT KDAVIQDLER KLRFKEDLLN bmy_20729T0/1-603 ---------G FPKKASRTAR IASDEEIQGS KDAVIQDLER KLRFKEDLLN BACU015213/1-595 ---------G FPKKASRTAR IASDEEIQGS KDAVIQDLER K--------- 701 750 ENSTTRP00000005963/1-1101 NGQPXXXXXX XXXXXXXXXX XXXXFNVQEP EEEAASQ--- ---------- ENSBTAP00000001432/1-1156 NGQPRLTYEE RMARRLLGAD SATVFNVQEP EEEAANQDPW PSRASVENPL ENSP00000425556/1-1123 NGQPRLTYEE RMARRLLGAD SATVFNIQEP EEETANQDIG SPHASVGSPL bmy_20729T0/1-603 NGQPRLTYEE RMARRLLGAD SATVFNVQEP EEEAANQ--- ---------- BACU015213/1-595 -----LTYEE RMARRLLGAD SATVFNVQEP EEEATNQ--- ---------- 751 800 ENSTTRP00000005963/1-1101 ----EYKVSS CEQRLISEIE YRLERSPVEE SGEEAPCGDA SVESGVAPFF ENSBTAP00000001432/1-1156 DGQKEYKVSS CEQRLISEIE YRLERSPVEE SGDEAPCGDT SVESGMAPFF ENSP00000425556/1-1123 DGQKEYKVSS CEQRLISEIE YRLERSPVDE SGDEVQYGDV PVENGMAPFF bmy_20729T0/1-603 ----EYKVSS CEQRLISEIE YRLERSPVEE SGEEVPCGDA SVESGVAPFF BACU015213/1-595 ----EYRVSS CEQRLISEIE YRLERSPVEE SAEEVPCGDT SVESGVAPFF 801 850 ENSTTRP00000005963/1-1101 ETKLKHFKIF EGMPVTFTCR VTGNPKPKTY WFKDGKQISP KNDHYSIRSD ENSBTAP00000001432/1-1156 EVKLKHYKIF EGMPATFTCR VAGDPKPKIY WFKDGKQISP KNDHYSIRSD ENSP00000425556/1-1123 EMKLKHYKIF EGMPVTFTCR VAGNPKPKIY WFKDGKQISP KSDHYTIQRD bmy_20729T0/1-603 EVKLKHFKIF EGMPVTFTCR VTGNPKPKTY WFKDGKQISP KNDHYSIRSD BACU015213/1-595 EMKLKHFKIF EGMPVTFTCR VTGNPKPKTY WFKDGKQISP KNDHYSIRSD 851 900 ENSTTRP00000005963/1-1101 PDGTCSLHTA ASTLDDDGNY TIMASSPQXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000001432/1-1156 PSGTCSLHTA ASTLEDDGNY TVMAANPQGR VSCTGRLMVQ AVNQRGRSPR ENSP00000425556/1-1123 LDGTCSLHTT ASTLDDDGNY TIMAANPQGR ISCTGRLMVQ AVNQRGRSPR bmy_20729T0/1-603 PDGTCSLHTV ASTLDDDGNY TIMASNLQGR VSCTGRLMVQ AVNQRGRSPR BACU015213/1-595 PDGTCSLHTA ASTLDDDGNY TIMASNLQDD QQGPVPQMRT LTSEYVAGLV 901 950 ENSTTRP00000005963/1-1101 XXXXXXXXXX SRSRSRDSAD EGEPIQERFF RPHFLQAPGD LTVQEGRLCR ENSBTAP00000001432/1-1156 PPAGHPHGRR PRSRSRDSAD EGEPIQERFF RPHFLQAPGD LTVQEGRLCR ENSP00000425556/1-1123 SPSGHPHVRR PRSRSRDSGD ENEPIQERFF RPHFLQAPGD LTVQEGKLCR bmy_20729T0/1-603 SPAGQPHGRR SRSRSRDSAD DGEPIQERFF RPHFLQAPGD LTVQEGRLCR BACU015213/1-595 FPL------- SRSRSRDSAD EGEPIQERFF RPHFLQAPGD LTVQEGRLCR 951 1000 ENSTTRP00000005963/1-1101 MDCK------ ---------- ---------- ---------- ---------- ENSBTAP00000001432/1-1156 MDCK------ ---------- ---------- ---------- ---------- ENSP00000425556/1-1123 MDCK------ ---------- ---------- ---------- ---------- bmy_20729T0/1-603 MDCKVRGVGA SLLPAIPLPS SSFWGKYVKY TSLKCFLAEE ERKWNILNIY BACU015213/1-595 MDCK------ ---------- ---------- ---------- ---------- 1001 1050 ENSTTRP00000005963/1-1101 ---------- ---------- ---------- -----VSGLP TPDLSWLLDG ENSBTAP00000001432/1-1156 ---------- ---------- ---------- -----VSGLP TPDLTWLLDG ENSP00000425556/1-1123 ---------- ---------- ---------- -----VSGLP TPDLSWQLDG bmy_20729T0/1-603 IHFKSFFSLT FKTLYTILQT ANWEVLSLKV ALFVEVSGLP TPDLSWLLDG BACU015213/1-595 ---------- ---------- ---------- -----VSGLP TPDLSWLLDG 1051 1100 ENSTTRP00000005963/1-1101 KPIRQDSTHK MLVRENGVHS LIIEPVTARD AGVYTCMATN RAGHNSFSLE ENSBTAP00000001432/1-1156 KPVRQDSAHK MLVRENGVHS LVIEPVSARD AGIYTCVATN RAGQNSFCLE ENSP00000425556/1-1123 KPVRPDSAHK MLVRENGVHS LIIEPVTSRD AGIYTCIATN RAGQNSFSLE bmy_20729T0/1-603 KPVRQDSTHK MLVRENGVHS LVIEPVTARD AGVYTCVATN RAGHNSFSLE BACU015213/1-595 KPIRQDSTHK MLVRENGVHS LIIEPVTARD AGIYTCVATN RAGHNSFSLE 1101 1150 ENSTTRP00000005963/1-1101 LVVAAKEAHK PPVFLEKLQN TGVADGYPVR LECRVSGVPP PQIFWKKENE ENSBTAP00000001432/1-1156 LVVAAKEAHK PPVFLEKLQN TGVADGYPVR LECRVSGAPP PQIFWKKENE ENSP00000425556/1-1123 LVVAAKEAHK PPVFIEKLQN TGVADGYPVR LECRVLGVPP PQIFWKKENE bmy_20729T0/1-603 LVVAAKEAHK PPVFLEKLQN TGVADGYPVR LECRVSGVPP PQIFWKKENE BACU015213/1-595 LVVAAKEAHK PPVFLEKLQN TGVADGYPVR LECRVSGVPP PQIFWKKENE 1151 1200 ENSTTRP00000005963/1-1101 SLTHSTDRVS LHQDNYGYVC LLIQGATKDD AGWYTVSAKN EAGIVSCTAR ENSBTAP00000001432/1-1156 SLTHSTDRVS MHQDHHGYVC LLIQGATKDD AGWYTVSAKN EAGIVSCTAR ENSP00000425556/1-1123 SLTHSTDRVS MHQDNHGYIC LLIQGATKED AGWYTVSAKN EAGIVSCTAR bmy_20729T0/1-603 SLTHSTDRMS LHQDNYGYVC LLIQGATKDD AGWYTVSAKN EAGIVSCTAR BACU015213/1-595 SLTHSTDRVS LHQDNYGYVC LLIQGATKDD AGWYTVSAKN EAGIVSCTAR 1201 1250 ENSTTRP00000005963/1-1101 LDVYI----- ---------- ---SQH---- ---------- ---------- ENSBTAP00000001432/1-1156 LDVYSNF--- -PTVIVTLAR RTVPKYRSEA LRVAVPHVPV SLAWAPQLCF ENSP00000425556/1-1123 LDVYI----- ---------- ---SRH---- ---------- ---------- bmy_20729T0/1-603 LDVYTQWQQP PPSTKPKRVR PSASRYAALS DQGLDIRAAF QPEASPSHLM BACU015213/1-595 LDVYTQWQQP PPSTKPKRVR PSASRYAALS DQGLDIRAAF QPEASPSHLM 1251 1300 ENSTTRP00000005963/1-1101 ---------- - ENSBTAP00000001432/1-1156 LPPRL----- - ENSP00000425556/1-1123 ---------- - bmy_20729T0/1-603 LSPGLVESED L BACU015213/1-595 LSPGLVESED L