KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:14:20 2014 Check: 00 .. Name: ENSTTRP00000011956/1-521 Len: 541 Check: 7949 Weight: 1.00 Name: ENSBTAP00000001439/1-525 Len: 541 Check: 576 Weight: 1.00 Name: ENSP00000468308/1-541 Len: 541 Check: 6280 Weight: 1.00 Name: bmy_14593T0/1-410 Len: 541 Check: 1145 Weight: 1.00 Name: BACU011459/1-365 Len: 541 Check: 531 Weight: 1.00 // 1 50 ENSTTRP00000011956/1-521 MPGLRRDRLR TLLLLGVLLA ADLYFHLGPR VRRRLRPRER PPGCPCAHRA ENSBTAP00000001439/1-525 MPGLRRDRLL TLLLLGALLA ADLYFHLGPR VRSRLQPRER PLGCPCARRA ENSP00000468308/1-541 MPGLRRDRLL TLLLLGALLS ADLYFHLWPQ VQRQLRPRER PRGCPCTGRA bmy_14593T0/1-410 ---------- ---------- ---------- ---------- ----KC---- BACU011459/1-365 ---------- ---------- ---------- -------MAI EVEVVCT--- 51 100 ENSTTRP00000011956/1-521 ATSAPRPAAR HV-------- -----PPAEP DGGG-PGS-- KLRALFAHPL ENSBTAP00000001439/1-525 ASPAPAPAPS A--------- -----PRRVE FGGGDPGS-- KLRALFAHPL ENSP00000468308/1-541 SSLARDSAAA ASDPGTIVHN FSRTEPRTEP AGGSHSGSSS KLQALFAHPL bmy_14593T0/1-410 ---------- ---------- ---------- ---------- ---------- BACU011459/1-365 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000011956/1-521 YNEPEKPPLL GPEDSLLAGP EALRYYRRKV ARWNRRHRIY KEQLNLTSLD ENSBTAP00000001439/1-525 YNEPEEPPLL GPEDSLLAGP EALRYYRRKV ARWNRRRKMY KEQLNLTSPE ENSP00000468308/1-541 YNVPEEPPLL GAEDSLLASQ EALRYYRRKV ARWNRRHKMY REQMNLTSLD bmy_14593T0/1-410 ---------- -------PGQ NQ----R--- -----RHKIY KEQLNLTSLD BACU011459/1-365 ---------- ----TLYSSN EQ----RLEG SLFSWRHKIY KEQLNLTSLD 151 200 ENSTTRP00000011956/1-521 PPLQLHLETS WIQFHLGISR HGLYSRSSPV VSKLLHDMRH LPTISADYSQ ENSBTAP00000001439/1-525 PPVQLRQEAS WVQFHLGINR HGLYPRSSPV VSKLLQDMRH FPTISADYSQ ENSP00000468308/1-541 PPLQLRLEAS WVQFHLGINR HGLYSRSSPV VSKLLQDMRH FPTISADYSQ bmy_14593T0/1-410 PPLQLRLETS WVQFHLGISR HGLYSRSSPV VSKLLHDMRH LPTISADYSQ BACU011459/1-365 SPLQLRLETS WVQFHLGISR HGLYSRSSPV VSKLLHDMRH LPTISADYSQ 201 250 ENSTTRP00000011956/1-521 DEKSLLGACD CTQIVKPSGV HLKLVLRFSD FGKAMFKPMR QLRDEETPED ENSBTAP00000001439/1-525 DEKALLGACD CSQIVKPSGV HLKLVLRFSD FGKAMFKPMR QQRDEETPED ENSP00000468308/1-541 DEKALLGACD CTQIVKPSGV HLKLVLRFSD FGKAMFKPMR QQRDEETPVD bmy_14593T0/1-410 DEKALLGACD CTQIVKPSGV HLKLVLRFSD FGKAMFKPMR QLRDEETPED BACU011459/1-365 DEKALLGACD CTQIVKPSGV HLKLVLRFSD FGKAMFKPMR QLRDEETPED 251 300 ENSTTRP00000011956/1-521 FFYXXXXXXX XXXXXXXXXX XILDFRRVPP TVGRLVNVTK EILEVTKNEI ENSBTAP00000001439/1-525 FFYFIDFQRH NAEIAAFHLD RILDFRRVPP TVGRLVNVTR EILEVTRNEI ENSP00000468308/1-541 FFYFIDFQRH NAEIAAFHLD RILDFRRVPP TVGRIVNVTK EILEVTKNEI bmy_14593T0/1-410 FFYFIDFQRH NAEIAAFHLD RILDFRRVPP TVGRLVNVTK EILEVTKNEI BACU011459/1-365 FFYFIDFQRH NAEIAAFHLD RILDFRRVPP TVGRLVNVTK EILEVTKNEI 301 350 ENSTTRP00000011956/1-521 LQSVFFISPA SNVCFFAKCP YLCKTEYAVC GNPHLXXXXX XXXXXXXXXX ENSBTAP00000001439/1-525 LQSVFFVSPA NNVCFFAKCP YMCKTEYAVC GSPHLLEGSL SAFLPSLNLA ENSP00000468308/1-541 LQSVFFVSPA SNVCFFAKCP YMCKTEYAVC GNPHLLEGSL SAFLPSLNLA bmy_14593T0/1-410 LQSVFFISPA SNVCFFAKCP YLCKTEYAVC GNPHLLEGSL SAFLPSLNLA BACU011459/1-365 LQSVFFISPA SNVCFFAKCP YLCKTEYAVC GNPHLLEGSL SAFLPSLNLA 351 400 ENSTTRP00000011956/1-521 XXXXXXXXXX XXXXXXXXXX WEVNPLYCDT VKQVYPHSSS GRLLNIIDMA ENSBTAP00000001439/1-525 PRFSMPSPWI RSYSLAGREE WEVNPLYCEA VKQAYPHNSS SRLLNIIDMA ENSP00000468308/1-541 PRLSVPNPWI RSYTLAGKEE WEVNPLYCDT VKQIYPYNNS QRLLNVIDMA bmy_14593T0/1-410 PRLSVPSPWI RSYSLAGKEE WEVNPLYCDT VKQVYPHSSS GRLLNIIDMA BACU011459/1-365 PRLSVPSPWI RSYSLAGKEE ---------- ---------- ---------- 401 450 ENSTTRP00000011956/1-521 IFDFLTGNMD RHHYETFTKF GDDGFLIHLD NARGFGRHSH DEVSILSPLS ENSBTAP00000001439/1-525 IFDFLIGNMD RHHYEMFTKF GEDGFLIHLD NARGFGRHSH DEVSILAPLF ENSP00000468308/1-541 IFDFLIGNMD RHHYEMFTKF GDDGFLIHLD NARGFGRHSH DEISILSPLS bmy_14593T0/1-410 IFDFLTGNMD RHHYETFSKF GDDGFLIHLD NARGFGRHSH DEISILSPLS BACU011459/1-365 ---------- ---------- ---------- ----FGRHSH DEISILSPLS 451 500 ENSTTRP00000011956/1-521 QCCRIKRKTL SHLQLLAQAD YRLSDVMRES LLEDQLTPVL TEPHLLALDR ENSBTAP00000001439/1-525 QCCRIKRKTL LHLQLLAQAD YRLSDVMRES LLEDQLSPVL TEPHLLALDR ENSP00000468308/1-541 QCCMIKKKTL LHLQLLAQAD YRLSDVMRES LLEDQLSPVL TEPHLLALDR bmy_14593T0/1-410 QCCRIKRKTL SHLQLLAQAD YRLSDVMRES LLQDQLTPVL TEPHLLALDR BACU011459/1-365 QCCRIKRKTL SHLQLLARAD YRLSDVMRES LLQDQLTPVL TEPHLLALDR 501 550 ENSTTRP00000011956/1-521 RLQTVLRTVR GCIEAHGEHS VVANGPTGQS APDSGPS--- - ENSBTAP00000001439/1-525 RLQTVLRTVQ DCIEAHGEQS VVADGPVGQW APDSSRANAT S ENSP00000468308/1-541 RLQTILRTVE GCIVAHGQQS VIVDGPVEQL APDSGQANLT S bmy_14593T0/1-410 RLQTVLRTVR GCIEAHGEHS VVANGPMGQS APDSGPS--- - BACU011459/1-365 RLQTVLRTVR GCIEAHGEHS VVANGPTGQS APDSGPS--- -