KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:14:23 2014 Check: 00 .. Name: ENSP00000327824/1-520 Len: 535 Check: 5163 Weight: 1.00 Name: ENSBTAP00000001456/1-495 Len: 535 Check: 223 Weight: 1.00 Name: bmy_04561T0/1-437 Len: 535 Check: 5681 Weight: 1.00 Name: ENSTTRP00000015316/1-516 Len: 535 Check: 5309 Weight: 1.00 // 1 50 ENSP00000327824/1-520 MAGPERWGPL LLCLLQAAPG RPRLAPPQNV TLLSQNFSVY LTWLPGLGNP ENSBTAP00000001456/1-495 MTGARRWAPL LLCLLQSAPG RPLLAPPQNV TLLSRDFSVY LTWLPGPGNP bmy_04561T0/1-437 ----MRW--- ---------- ---------- ----FEKGEK EDWLQ-PGD- ENSTTRP00000015316/1-516 MTGAPRWASL LLCLLQSTSG RPLLAPPQNV TLLSWDFSVY LTWLPGPGNP 51 100 ENSP00000327824/1-520 QDVTYFVAYQ SSPTRRRWRE VEECAGTKEL LCSMMCLKKQ DLYNKFKGRV ENSBTAP00000001456/1-495 QNVTYFVAYQ SFAPPRRWRR VKKCAGTKEL VCSLMCLEKQ DLCNKFKGRV bmy_04561T0/1-437 --------VC SSATPTKWRR VKKCARTKDL VCSLMCLEKQ DLCNKFKGRV ENSTTRP00000015316/1-516 QNMTYFVAYQ SSATPKQWRR VKMCAGTKEL QCSLMCLEKQ DLCNKFKGRV 101 150 ENSP00000327824/1-520 RTVSPSSKSP WVESEYLDYL FEVEPAPPVL VLTQTEEILS ANATYQLPPC ENSBTAP00000001456/1-495 QAVSPSARSP WVESKFMDYF FEVEPAPPVL VFNQTEEILI VNATYQLPHC bmy_04561T0/1-437 QAVSPRARSP WVESKSMDYF FEVEPAPPVL VFTRTDEILS VNATYELPHC ENSTTRP00000015316/1-516 RAVSPRARSP WVESKSMDYF FEVEPAPPVL VFTRTDEILS VNATYQLPHC 151 200 ENSP00000327824/1-520 MPPLDLKYEV AFWKEGAGNK TLFPVTPHGQ PVQITLQPAA SEHHCLSART ENSBTAP00000001456/1-495 LPQPDMNYEV NFWKEGTKNK TRFPDTRHGQ PVQIPLQPDT SGHHCLSART bmy_04561T0/1-437 MPQPDLNYEV AFWKEGARNK TPFPATPHGQ PVQISLQPDT SGHHCLSART ENSTTRP00000015316/1-516 MPQPDLSYEV YFWKEGTGNE ASFPATPHGQ PVQISLQPDT SGHHCLSART 201 250 ENSP00000327824/1-520 IYTFSVPKYS KFSKPTCFLL EVPEANWAFL V-LPSLLILL LVIAAGGVIW ENSBTAP00000001456/1-495 IYFFGNPKYS EFSEPTCFFL EAPGSNWALL LLLPFLLPLL LAVAIGPVMW bmy_04561T0/1-437 IYTFGYPKYS EFSEPTCFFL EAP------- ---------- -----GPVIW ENSTTRP00000015316/1-516 IYTFGSPKYS KFSEPTCFFL EAPGSNWALL VLLPLLLPLL LVVATGPVIW 251 300 ENSP00000327824/1-520 KTLMGNPWFQ RAKMPRALDF SGHTHPVATF QPSRPESVND LFLCPQKELT ENSBTAP00000001456/1-495 KTFRENPWFQ QTKMPQALEV ---------- ---------- ---------T bmy_04561T0/1-437 KSFRGNPWFH QAKMPQALEL ---------- ---------- ---------T ENSTTRP00000015316/1-516 KSFRGNPWFH QAKMPQALDL SGHRHPGATF QPSGPECLHV LILCPQKEQT 301 350 ENSP00000327824/1-520 RGVRPTPRVR APATQQTRWK KDLAE----D EEEEDEEDTE DGVSFQPYIE ENSBTAP00000001456/1-495 RRVRLTSRVR APAPVQARPE KDSAE-EKDG EESTDEEDLD PGVSFQPYVE bmy_04561T0/1-437 RRVRLTPRVR APATVQAGSE KDSAEGEKDD KENTDEEDTD EGVSFQPYTE ENSTTRP00000015316/1-516 RRVRLTPRVR APATVQAGSE -DSAE----- EEEADEESSD DGVSFQPYTE 351 400 ENSP00000327824/1-520 PPSFLGQEHQ APGHSEAGGV DSGRPRAPLV PSEGSSAWDS SDRSWASTV- ENSBTAP00000001456/1-495 PPPFLGQEPQ SPGPTKAGE- ----PWTPLV QGEGSSACSS SGRSWVSTAG bmy_04561T0/1-437 PPPFLGQEPQ SLGHAEAGG- ----PWTPLV QVEGSSACDS SDRSWASTAG ENSTTRP00000015316/1-516 PPPFLGQEHQ SPGQAEAGG- ----PWTPLV QVEGSSACDS SDRSWASTVG 401 450 ENSP00000327824/1-520 -DSSWDRAGS SGYLAEKGPG QGPGGDGHQE SLPPPEFSKD SGFLEELPED ENSBTAP00000001456/1-495 SSSPWDEAGS SGYLAKKGPG QGMGREEHQK PLPPP---KD SSSLGEPSKD bmy_04561T0/1-437 -SSPWDEAGS SGYLAKKRPG RGPDGKELQK PLPPPEFSED SSSLEEPPKD ENSTTRP00000015316/1-516 -SSTWDEAGS SGYLAKKRPG RGPGGKEFQK PLPPPEFSED SSSLEEPPED 451 500 ENSP00000327824/1-520 NLSSWATWGT LPPEPNLVPG GPPVSLQTLT FCWESSP--- -----EEEEE ENSBTAP00000001456/1-495 NLSSWTSWGL SSPGLNLVPG EPPVSLRTLT FCWDSSPEDD EGEEEEEEEG bmy_04561T0/1-437 NPSSWVSWGL PSPGLILVPR EPPVSLQTLT FCWDSSPEEE EEEGEEEEEG ENSTTRP00000015316/1-516 NPSSWVSWGL PSPGLILVPR EPPVSLQTLT FCWDSSP--- ----EEEEEG 501 550 ENSP00000327824/1-520 ARESEIEDSD AGSWGAESTQ RTEDRGRTLG HYMAR ENSBTAP00000001456/1-495 WRESESEDSG AGSWGAKSLQ RTEV--RPLG HYLAR bmy_04561T0/1-437 GRESESEDSG GGSCGAESLQ RIEVRGRTLG HYLAR ENSTTRP00000015316/1-516 GGESESEDSS DGSCGAKSLQ RIEVRGRTLG HYLAR