KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 16:14:23 2014  Check: 00 ..

 Name: ENSTTRP00000010497/1-170  Len:    237  Check:  6921  Weight:  1.00
 Name: bmy_05301T0/1-194         Len:    237  Check:  7760  Weight:  1.00
 Name: ENSP00000333833/1-234     Len:    237  Check:  6271  Weight:  1.00
 Name: ENSBTAP00000001461/1-208  Len:    237  Check:  7772  Weight:  1.00

//


                          1                                                   50
ENSTTRP00000010497/1-170  ---------- ---------- ---------- ---------- ---------- 
bmy_05301T0/1-194         VR-------- ---------I GSGHIPDRDT AVPRGKTPGL YVVAVVEFYL 
ENSP00000333833/1-234     MRSGEELDGF EGEASSTSMI SGASSPYQPT TEPVSQRRGL AGLRCDPDYL 
ENSBTAP00000001461/1-208  MRSGEELDGF EGEASSTSMI SGASSPYQPT TEPVSQRRGL AGLRCDPDYL 


                          51                                                 100
ENSTTRP00000010497/1-170  ---------- -----ILALI AFICIETIME CSPCEGLYFF EFVSCSAFVV 
bmy_05301T0/1-194         NAADTCVHRC VLNVHILALI AFICIETIME CSPCEGLYFF EFVSCSAFVV 
ENSP00000333833/1-234     RGALGRLKVA QV---ILALI AFICIETIMA CSPCEGLYFF EFVSCSAFVV 
ENSBTAP00000001461/1-208  RGALGCLKVA QV---ILALI AFICIETIME CSPCEGLYFF EFVSCSAFVV 


                          101                                                150
ENSTTRP00000010497/1-170  TGVLLILFSL NLHMRIPQIN WNLTDLVNTG LSTFFFFIAS IVLAALNHKT 
bmy_05301T0/1-194         TGVLLILFSL NLHMRIPQIN WNLTDLVNTG LSTFFFFIAS IVLAALNHKT 
ENSP00000333833/1-234     TGVLLIMFSL NLHMRIPQIN WNLTDLVNTG LSAFLFFIAS IVLAALNHRA 
ENSBTAP00000001461/1-208  TGVLLILFSL NLHMRIPQIN WNLTDLVNTG LSTFFFFIAS IVLAALNHKT 


                          151                                                200
ENSTTRP00000010497/1-170  GAEIAAVXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 
bmy_05301T0/1-194         GAEIAAVIFG FLATAAHAVS AFLAAQKWRV SLRQQSASDY IRARTESRDV 
ENSP00000333833/1-234     GAEIAAVIFG FLATAAYAVN TFLAVQKWRV SVRQQSTNDY IRARTESRDV 
ENSBTAP00000001461/1-208  GAEIAAVIFG FLATAAYAVN TFLAVQKWRV SLRQQSANDY IRARTESRDV 


                          201                                                250
ENSTTRP00000010497/1-170  XXXXXXXXXX XFDYSINIKV KKKLPVS--P LNQWRLA 
bmy_05301T0/1-194         DSRPEIQRLD T--------- ---------- ------- 
ENSP00000333833/1-234     DSRPEIQRLD TFSYSTNVTV RKKSPTNLLS LNHWQLA 
ENSBTAP00000001461/1-208  DSRPEIQRLD T--------- ---------- -------