KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:14:24 2014 Check: 00 .. Name: ENSP00000390564/1-505 Len: 541 Check: 3251 Weight: 1.00 Name: ENSBTAP00000001467/1-495 Len: 541 Check: 1297 Weight: 1.00 Name: ENSTTRP00000013608/1-288 Len: 541 Check: 8619 Weight: 1.00 Name: bmy_15328T0/1-462 Len: 541 Check: 3527 Weight: 1.00 Name: BACU011508/1-466 Len: 541 Check: 6765 Weight: 1.00 // 1 50 ENSP00000390564/1-505 MP-------- ---------- ---------- --QALERADG SWAWVVLLAT ENSBTAP00000001467/1-495 MPRPVRGPLA TSQGAASLCC TRCRARGKLR MSQALERSEG CWAWVVLLAS ENSTTRP00000013608/1-288 ---------- ---------- ---------- ---------- ---------- bmy_15328T0/1-462 MP-------- ---------- ---------- --QALECSEG YWAWMVLLAS BACU011508/1-466 MP-------- ---------- ---------- --QAPECSEG YWAWMVLLAS 51 100 ENSP00000390564/1-505 MVTQGLTLGF PTCIGIFFTE LQWEFQASNS ETSWFPSILT AVLHMAGPLC ENSBTAP00000001467/1-495 VVTQGLTLGF PTCIGIFFTE LQREFQASNS ETSWFPSILT AMLHAGGPLC ENSTTRP00000013608/1-288 ---------- ---------- ---------- ---------- ---------- bmy_15328T0/1-462 VVTQGLTLGF PTCIGIFFTE LQREFQASNS ETSWFPSILT AMLHAGGPLC BACU011508/1-466 VVTQGLTLGF PTCIGIFFTE LQREFQASNS ETSWFPSILT AMLHAGGPLC 101 150 ENSP00000390564/1-505 SILVGRFGCR VTVMLGGVLA SLGMVASSFS HNLSQLYFTA GFITGLGMCF ENSBTAP00000001467/1-495 SILVGRFGCR ATMMLGGVLA SLGMVAGSFC RTLGQLYLTA GFITGLGMCF ENSTTRP00000013608/1-288 ---------- ---------- ---------- ---------- ---------- bmy_15328T0/1-462 SILVGRFGCR ATVMLGGVLA SLGMVAGSFS CTLGQLYLTA GFITGLGMCF BACU011508/1-466 SILVGRFGCR ATVMLGGVLA SLGMVAGSFS CTLGQLYLTA GFITGLGMCF 151 200 ENSP00000390564/1-505 SFQSSITVLG FYFVRRRVLA NALASMGVSL GITLWPLLSR YLLENLGWRG ENSBTAP00000001467/1-495 SFQSSITVLG LYFTRWQVLA NALASAGVSL GITLWPLLSR YLLEDLGWRG ENSTTRP00000013608/1-288 ---------- ---------- ---------- ---------- ---------- bmy_15328T0/1-462 SFQSSITVLG FYFTRWRVLA NALASAGVSL GIMLWPLLSR YLLEDLGWRG BACU011508/1-466 SFQSSITVLG FYFTRWRVLA NALASAGVSL GIMLWPLLSR YLLEDVGWRG 201 250 ENSP00000390564/1-505 TFLVFGGIFL HCCICGAIIR PVATSVAPET KECPPPPPET PALGCLAACG ENSBTAP00000001467/1-495 TFLIFGGVLL HCCVCGAVVR PVPASVTPEA REGLPSPSKR PSRGCPAACG ENSTTRP00000013608/1-288 ---------- ---------- ---------- ---------- --------CG bmy_15328T0/1-462 SFLIFGGVLL HCCVCGAILR PVPATATPET XEGLPPPSKR PARGCPAAYG BACU011508/1-466 SFLIFGGVLL HCCVCGAILR PVPATATPET REGLPPPSKR PARGCLAAYG 251 300 ENSP00000390564/1-505 RTIQRHLAFD ILRHNTGYCV YILGVMWSVL GFPLPQVFLV PYAMWHSVDE ENSBTAP00000001467/1-495 RAIRRHLAFD VLRDNVGYRV YTLGVVWMIL GFPLPHVFLV PYAIRHGMDE ENSTTRP00000013608/1-288 RAIRRHLAFD VLRHNVGYRV YTLGVAWMIV GFPLPHVFLV PYAIWHGVDE bmy_15328T0/1-462 RAIQRHLAFD VLRHNVGYRV YTLGVVWMIM GFPLPHVFLV PYAIWHGVDE BACU011508/1-466 RAVQRHLAFD VLRHNVGYRV YTLGVVWMIM GFPLPHVFLV PYAIWHGVDE 301 350 ENSP00000390564/1-505 QQAALLISII GFSNIFLRPL AGLMAGRPAF ASHRKYLFSL ALLLNGLTNL ENSBTAP00000001467/1-495 QKAALLISVI GFSNIFLRPM AGLVAGRREF AGHRKYLFSL AALLNGLTNL ENSTTRP00000013608/1-288 HRAALLISII GFSNIFLRPM AGLVAGRRDF ASHRKYLFSL AALLNGLTNL bmy_15328T0/1-462 HRAALLISII GFSNIFLRPM AGLVAGRRDF ASHRKYLFSL AALLNGLTNL BACU011508/1-466 HRASLLISII GFSNIFLRPM AGLVAGRRDF ASHRKYLFSL AALLNGLTNL 351 400 ENSP00000390564/1-505 VCAASGDFWV LVGYCLAYSV SMSGIGALIF QVLMDIVPMD QFPRALGLFT ENSBTAP00000001467/1-495 VCVASADFRV LVGYCLAYSV SMSGIG-LLF QVLMDIVPMD RFSSALGLFT ENSTTRP00000013608/1-288 ACAASADFRV LVAYCLVYSV SMSGIGALLF QVLMDIVPMD RFSSALGLFT bmy_15328T0/1-462 VCAASADFRV LVGYCLVYSV SMSGVGALLF QVLMDVVPMD RFSSALGLFT BACU011508/1-466 VCAASADFRV LVGYCLVYSV SMSGVGALLF QVLMDVVPMD RFSSALGLFT 401 450 ENSP00000390564/1-505 VLDGLAFLIS PPLAGLLLDA TNNFSYVFYM SSFFLISAAL FMGGSFYALQ ENSBTAP00000001467/1-495 VLESISILIS PPLAGLLLDT TDDFSYVFYM SSFFLISAAL FMGGSFCVLG ENSTTRP00000013608/1-288 VLESISILIS PPLAGLLLDT TSNFSYVFYM SSFFLISAAL FMGGSFWALG bmy_15328T0/1-462 VLESVSILIS PPLA----DT TSNFSYVFYM SSFFLISAAL FMGGSFWALG BACU011508/1-466 VLESVSILIS PPLAGLLLDT TSNFSYVFYM SSFFLISAAL FMGGSFWALG 451 500 ENSP00000390564/1-505 KKE------Q GKQAVAADAL ERDLFLEAKD GPGKQRSPEI MCQSSRQPRP ENSBTAP00000001467/1-495 KKERQGPWAE AKGAVPEAAP EQGLATEDMD GPEKRLRVEI MYVTSV---- ENSTTRP00000013608/1-288 KIERQGPQAE VQGAVTEAAP EQGLTLEDTD GPKKRLREII LQPSSCTS-P bmy_15328T0/1-462 KMERQGPRAE VEGAVTEAAP EQGLTMEDTD GPKKQQRMEI MYVTSV---- BACU011508/1-466 KMERQGPRAE MEGAVTEAAP EQGLTMEDTD GPKKQLRMEI MYVTSV---- 501 550 ENSP00000390564/1-505 AGVNKHLWGC PASSRTSHEW LLWPKAVLQA KQTALGWNSP T ENSBTAP00000001467/1-495 ---------- ---------- ---------- ---------- - ENSTTRP00000013608/1-288 TGVSQHPWAC VFPR--THEC PFWPKEVVQV KQRALGWNT- - bmy_15328T0/1-462 ---------- ---------- ---------- ---------- - BACU011508/1-466 ---------- ---------- ---------- ---------- -