KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:14:27 2014 Check: 00 .. Name: ENSTTRP00000002333/1-1428 Len: 1430 Check: 9082 Weight: 1.00 Name: bmy_18533T0/1-1300 Len: 1430 Check: 546 Weight: 1.00 Name: ENSP00000425658/1-1429 Len: 1430 Check: 3710 Weight: 1.00 Name: BACU004195/1-1428 Len: 1430 Check: 6819 Weight: 1.00 Name: ENSBTAP00000001482/1-1429 Len: 1430 Check: 7265 Weight: 1.00 // 1 50 ENSTTRP00000002333/1-1428 MTNPWEEKVC KMAQTSLLQG KQFYCKEWVF HKLQHCLQEX XXXXXXXXXX bmy_18533T0/1-1300 ---------- ---------- ---------- ---------- -----RAEEA ENSP00000425658/1-1429 MTNPWEEKVC KMAQTSLLQG KQFYCREWVF HKLQHCLQEK SNCCNSAVNA BACU004195/1-1428 MTNPWEEKVC KMAQTSLLQG KQFYCREWVF HKLQHCLQEK TNCCNSAVNT ENSBTAP00000001482/1-1429 MTNPWEEKVC KMAQTSLLQG KQFYCREWVF HKLQHCLQEK TNCCNSAVNT 51 100 ENSTTRP00000002333/1-1428 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_18533T0/1-1300 AAVGVRRALA AAAASQRSKC LKLGVLGGGG GG-------- ---------- ENSP00000425658/1-1429 PSLVMNSGNN ASGVSGKGAA WGVLLVGGPG SGKTALCTEL LWPSSPASLQ BACU004195/1-1428 PPLVMNSGNN ASVVSGKGAA WGVLLVGGPG SGKTALCTEL LWPSSPTSLQ ENSBTAP00000001482/1-1429 PPLVMNSGNN ASVVSGKGAA WGVLLVGGPG SGKTALCTEL LWPSSPTSLQ 101 150 ENSTTRP00000002333/1-1428 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_18533T0/1-1300 ---------- ---------- ---GG----- ---------- -------RDR ENSP00000425658/1-1429 RGLHRQALAF HFCKAQDSDT LCVGGFIRGL VAQICRSGLL QGYEDKLRDP BACU004195/1-1428 RGLHRQALAF HFCKAQDSDT LCVGGFIRGL VAQICRSGLL QGYEDKLRDP ENSBTAP00000001482/1-1429 RGLHRQALAF HFCKAQDSDT LCVGGFIRGL VAQICRSGLL QGYEDKLRDP 151 200 ENSTTRP00000002333/1-1428 XXXXXXXXXX XXXXXXXXXX XCVLLPLLGM KPPQQSLYLL VDSVDEGCNV bmy_18533T0/1-1300 A-------NN IQNAHMDVFY RCVLLPLLGM KPPQQSLYLL VDSVDEGCNV ENSP00000425658/1-1429 AVQSLLQPGE CERNPAEAFK RCVLLPLLGM KPPQQSLYLL VDSVDEGCNI BACU004195/1-1428 AVQSLLQPGE CERNPAEAFK RCVLLPLLGM KPPQQSLYLL VDSVDEGCNV ENSBTAP00000001482/1-1429 AVQSLLQPGE CERNPAEAFK RCVLLPLLGM KPPQQSLYLL VDSVDEGCNI 201 250 ENSTTRP00000002333/1-1428 TEGEQTSTSL SGTVAELLAG HHEFFPPWLL LLCSARKQSK AVTKMFTGFR bmy_18533T0/1-1300 TEGEQTSTSL SGTVAELLAG HHEFFPPWLL LLCSARKQSK AVTKMFTGFR ENSP00000425658/1-1429 TEGEQTSTSL SGTVAALLAG HHEFFPPWLL LLCSARKQSK AVTKMFTGFR BACU004195/1-1428 TEGEQTSTSL SGTVAELLAG HHEFFPPWLL LLCSARKQSK AVTKMFTGFR ENSBTAP00000001482/1-1429 TEGEQTSTSL SGTVAELLAG HHEFFPPWLL LLCSARKQSK AVTKMFTGFR 251 300 ENSTTRP00000002333/1-1428 KISLXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_18533T0/1-1300 KISLDDLRKA YIVKDVQQYI LHRLDQEEAL RQHLTKETAE MLNQLHIKSS ENSP00000425658/1-1429 KISLDDLRKA YIVKDVQQYI LHRLDQEEAL RQHLTKETAE MLNQLHIKSS BACU004195/1-1428 KISLDDLRKA YIVKDVQQYI LHRLDQEEAL RQHLTKETAE MLNQLHIKSS ENSBTAP00000001482/1-1429 KISLDDLRKA YIVKDVQQYI LHRLDQEEAL RQHLTKETAE MLNQLHIKSS 301 350 ENSTTRP00000002333/1-1428 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_18533T0/1-1300 GCFLYLERVL DGVVENFIML REIRDIPGTL NGLYLWLCQR LFVRKQFAKV ENSP00000425658/1-1429 GCFLYLERVL DGVVENFIML REIRDIPGTL NGLYLWLCQR LFVRKQFAKV BACU004195/1-1428 GCFLYLERVL DGVVENFIML REIRDIPGTL NGLYLWLCQR LFVRKQFAKV ENSBTAP00000001482/1-1429 GCFLYLERVL DGVVENFIML REIRDIPGTL NGLYLWLCQR LFVRKQFAKV 351 400 ENSTTRP00000002333/1-1428 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXLVDGL bmy_18533T0/1-1300 QPILNVILAA CRPLTITELY HAVWTKSMSL SLEDFQRKLD VLSKLLVDGL ENSP00000425658/1-1429 QPILNVILAA CRPLTITELY HAVWTKNMSL TLEDFQRKLD ILSKLLVDGL BACU004195/1-1428 QPILNVILAA CRPLTITELY HAVWTKSMSL SLEDFQRKLD VLSKLLVDGL ENSBTAP00000001482/1-1429 QPILNVILAA CRPLTITELY HAVWTKNMSL TLEDFQRKLD VLSKLLVDGL 401 450 ENSTTRP00000002333/1-1428 GDTKILFHYS FAEWLLDVKH CTQKYLCNAA EGHRMLAMSY TCQAKNLTPL bmy_18533T0/1-1300 GDTKILFHYS FAEWLLDVKH CTQKYLCNAA EGHRMLAMSY TCQAKNLTPL ENSP00000425658/1-1429 GNTKILFHYS FAEWLLDVKH CTQKYLCNAA EGHRMLAMSY TCQAKNLTPL BACU004195/1-1428 GDTKILFHYS FAEWLLDVKH CTQKYLCNAA EGHRMLAMSY TCQAKNLTPL ENSBTAP00000001482/1-1429 GNTKILFHYS FAEWLLDVKH CTQKYLCNAA EGHRMLAMSY TCQAKNLTPL 451 500 ENSTTRP00000002333/1-1428 EAQEFALHLI NSNLQLETAE LALWMIWNGT PVRDSLSTLI PKEQEVLQLL bmy_18533T0/1-1300 EAQEFALHLI NSNLQLETAE LALWMIWNGT PVRDSLSTLI PKEQEVLQLL ENSP00000425658/1-1429 EAQEFALHLI NSNLQLETAE LALWMIWNGT PVRDSLSTLI PKEQEVLQLL BACU004195/1-1428 EAQEFALHLI NSNLQLETAE LALWMIWNGT PVRDSLSTLI PKEQEVLQLL ENSBTAP00000001482/1-1429 EAQEFALHLI NSNLQLETAE LALWMIWNGT PVRDSLSTLI PKEQEVLQLL 501 550 ENSTTRP00000002333/1-1428 VKAGAHVNSE DDRTSCIVRQ ALEREDSIRT LLDNGASVNQ CDSNGRTLLA bmy_18533T0/1-1300 VKAGAHVNSE DDRTSCIVRQ ALEREDSIRT LLDNGASVNQ CDSNGRTLLA ENSP00000425658/1-1429 VKAGAHVNSE DDRTSCIVRQ ALEREDSIRT LLDNGASVNQ CDSNGRTLLA BACU004195/1-1428 VKAGAHVNSE DDRTSCIVRQ ALEREDSIRT LLDNGASVNQ CDSNGRTLLA ENSBTAP00000001482/1-1429 VKAGAHVNSE DDRTSCIVRQ ALEREDSIRT LLDNGASVNQ CDSNGRTLLA 551 600 ENSTTRP00000002333/1-1428 NAAYSGNLDV VNLLISRGAD LEIEDAHGHT PLTLAARQGH TKVVNCLIGC bmy_18533T0/1-1300 NAAYSGNLDV VNLLVSRGAD LEIEDAHGHT PLTLAARQGH TKVVNCLIGC ENSP00000425658/1-1429 NAAYSGSLDV VNLLVSRGAD LEIEDAHGHT PLTLAARQGH TKVVNCLIGC BACU004195/1-1428 NAAYSGNLDV VNLLVSRGAD LEIEDAHGHT PLTLAARQGH TKVVNCLIGC ENSBTAP00000001482/1-1429 NAAYSGNLDV VNLLVSRGAD LEIEDAHGHT PLTLAARQGH TKVVNCLIGC 601 650 ENSTTRP00000002333/1-1428 GANINHTDQD GWTALRSAAW GGHTEVVSAL LYAGVKVDCA DADSRTALRA bmy_18533T0/1-1300 GANINHTDQD GWTALRSAAW GGHTEVVSAL LYAGVKVDCA DADSRTALRA ENSP00000425658/1-1429 GANINHTDQD GWTALRSAAW GGHTEVVSAL LYAGVKVDCA DADSRTALRA BACU004195/1-1428 GANINHTDQD GWTALRSAAW GGHTEVVSAL LYAGVKVDCA DADSRTALRA ENSBTAP00000001482/1-1429 GANINHTDQD GWTALRSAAW GGHTEVVSAL LYAGVKVDCA DADSRTALRA 651 700 ENSTTRP00000002333/1-1428 AAWGGHEDIV LNLLQHGAEV NKADNEGRTA LIAAAYMGHR EIVEHLLDHG bmy_18533T0/1-1300 AAWGGHEDIV LNLLQHGAEV NKADNEGRTA LIAAAYMGHR EIVEHLLDHG ENSP00000425658/1-1429 AAWGGHEDIV LNLLQHGAEV NKADNEGRTA LIAAAYMGHR EIVEHLLDHG BACU004195/1-1428 AAWGGHEDIV LNLLQHGAEV NKADNEGRTA LIAAAYMGHR EIVEHLLDHG ENSBTAP00000001482/1-1429 AAWGGHEDIV LNLLQHGAEV NKADNEGRTA LIAAAYMGHR EIVEHLLDHG 701 750 ENSTTRP00000002333/1-1428 AEVNHEDVDG RTALSVAALC VPASKGHASV VS-LIDRGAE VDHCDKDGMT bmy_18533T0/1-1300 AEVNHEDVDG RTALSVAALC VPASKGHASV VSLLIDRGAE VDHCDKDGMT ENSP00000425658/1-1429 AEVNHEDVDG RTALSVAALC VPASKGHASV VSLLIDRGAE VDHCDKDGMT BACU004195/1-1428 AEVNHEDVDG RTALSVAALC VPASKGHASV VSLLIDRGAE VDHCDKDGMT ENSBTAP00000001482/1-1429 AEVNHEDVDG RTALSVAALC VPASKGHASV VSLLIDRGAE VDHCDKDGMT 751 800 ENSTTRP00000002333/1-1428 PLLVAAYEGH VDVVDLLLEG GADVDHTDNN GRTPLLAAAS MGHASVVNTL bmy_18533T0/1-1300 PLLVAAYEGH VDVVDLLLEG GADVDHTDNN GRTPLLAAAS MGHASVVNTL ENSP00000425658/1-1429 PLLVAAYEGH VDVVDLLLEG GADVDHTDNN GRTPLLAAAS MGHASVVNTL BACU004195/1-1428 PLLVAAYEGH VDVVDLLLEG GADVDHTDNN GRTPLLAAAS MGHASVVNTL ENSBTAP00000001482/1-1429 PLLVAAYEGH VDVVDLLLEG GADVDHTDNN GRTPLLAAAS MGHASVVNTL 801 850 ENSTTRP00000002333/1-1428 LFWGAAVDSI DSEGRTVLSI ASAQGNVEVV RTLLDRGLDE NHRDDAGWTP bmy_18533T0/1-1300 LFWGAAVDSI DSEGRTVLSI ASAQGNVEVV RTLLDRGLDE NHRDDAGWTP ENSP00000425658/1-1429 LFWGAAVDSI DSEGRTVLSI ASAQGNVEVV RTLLDRGLDE NHRDDAGWTP BACU004195/1-1428 LFWGAAVDSI DSEGRTVLSI ASAQGNVEVV RTLLDRGLDE NHRDDAGWTP ENSBTAP00000001482/1-1429 LFWGAAVDSI DSEGRTVLSI ASAQGNVEVV RTLLDRGLDE NHRDDAGWTP 851 900 ENSTTRP00000002333/1-1428 LHMAAFEGHR LICEALIEQG ARTNEIDNDG RIPFILASQE GHYDCVQVLL bmy_18533T0/1-1300 LHMAAFEGHR LICEALIEQG ARTNEIDNDG RIPFILASQE GHYDCVQVLL ENSP00000425658/1-1429 LHMAAFEGHR LICEALIEQG ARTNEIDNDG RIPFILASQE GHYDCVQILL BACU004195/1-1428 LHMAAFEGHR LICEALIEQG ARTNEIDNDG RIPFILASQE GHYDCVQVLL ENSBTAP00000001482/1-1429 LHMAAFEGHR LICEALIEQG ARTNEIDNDG RIPFILASQE GHYDCVQILL 901 950 ENSTTRP00000002333/1-1428 ENKSNIDHRG YDGRNALRVA ALEGHRDIVE LLFSHGADVN YKDADGRPTL bmy_18533T0/1-1300 ENKSNIDHRG YDGRNALRVA ALEGHRDVVE LLFSHGADVN YKDADGRPTL ENSP00000425658/1-1429 ENKSNIDQRG YDGRNALRVA ALEGHRDIVE LLFSHGADVN CKDADGRPTL BACU004195/1-1428 ENKSNIDHRG YDGRNALRVA ALEGHRDIVE LLFSHGADVN YKDADGRPTL ENSBTAP00000001482/1-1429 ENKSNIDQRG YDGRNALRVA ALEGHRDIVE LLFSHGADVN YKDADGRPTL 951 1000 ENSTTRP00000002333/1-1428 YILALENQLT MAEYFLENGA NVEASDAEGR TALHVSCWQG HLEMVQVLIT bmy_18533T0/1-1300 YILALENQLT MAEYFLENGA NVEASDAEGR TALHVSCWQG HLEMVQVLIT ENSP00000425658/1-1429 YILALENQLT MAEYFLENGA NVEASDAEGR TALHVSCWQG HMEMVQVLIA BACU004195/1-1428 YILALENQLT MAEYFLENGA NVEASDAEGR TALHVSCWQG HLEMVQVLIT ENSBTAP00000001482/1-1429 YILALENQLT MAEYFLENGA NVEASDAEGR TALHVSCWQG HLEMVQVLIT 1001 1050 ENSTTRP00000002333/1-1428 YHADVNAADN EKRSALQSAA WQGHVKVVQL LIEHGAMVDH TCNQGATALC bmy_18533T0/1-1300 YHADVNAADN EKRSALQSAA WQGHVKVVQL LIEHGAMVDH TCNQGATALC ENSP00000425658/1-1429 YHADVNAADN EKRSALQSAA WQGHVKVVQL LIEHGAVVDH TCNQGATALC BACU004195/1-1428 YHADVNAADN EKRSALQSAA WQGHVKVVQL LIEHGAMVDH TCNQGATALC ENSBTAP00000001482/1-1429 YHADVNAADN EKRSALQSAA WQGHVKVVQL LIEHGAVVDH TCNQGATALC 1051 1100 ENSTTRP00000002333/1-1428 IAAQEGHIDV VQVLLEHGAD PNHADQFGRT AMRVAAKNGH SQIIKLLEKY bmy_18533T0/1-1300 IAAQEGHIDV VQALLEHGAD PNHADQFGRT AMRVAAKNGH SQIIKLLEKY ENSP00000425658/1-1429 IAAQEGHIDV VQVLLEHGAD PNHADQFGRT AMRVAAKNGH SQIIKLLEKY BACU004195/1-1428 IAAQEGHIDV VQVLLEHGAD PNHADQFGRT AMRVAAKNGH SQIIKLLEKY ENSBTAP00000001482/1-1429 IAAQEGHIDV VQVLLEHGAD PNHADQFGRT AMRVAAKNGH SQIIKLLEKY 1101 1150 ENSTTRP00000002333/1-1428 GASSLNGCSP SPVHTMEQKP LQSVSSKMQS LTIKSNSSGS TGGGDVQTSL bmy_18533T0/1-1300 GASSLNGCSP SPVHTMEQKP LQSVSSKMQS LTIKSNSSGS TGGGDVQPSL ENSP00000425658/1-1429 GASSLNGCSP SPVHTMEQKP LQSLSSKVQS LTIKSNSSGS TGGGDMQPSL BACU004195/1-1428 GASSLNGCSP SPVHTMEQKP LQSVSSKMQS LTIKSNSSGS TGGGDVQPSL ENSBTAP00000001482/1-1429 GASSLNGCSP SPVHTMEQKP LQSVSSKMQS LTIKSNSSGS TGGGEAQPSL 1151 1200 ENSTTRP00000002333/1-1428 RGLPNGPAHA FSSPSESPDS TVDRQKSSLS NNSLKSSKNS SLRTTSSTAT bmy_18533T0/1-1300 RGLPNGPAHA FSSPSESPDS TVDRQKSSLS NNSLKSSKNS SLRTTSSTAT ENSP00000425658/1-1429 RGLPNGPTHA FSSPSESPDS TVDRQKSSLS NNSLKSSKNS SLRTTSSTAT BACU004195/1-1428 RGLPNGPAHA FSSPSESPDS TVDRQKSSLS NNSLKSSKNS SLRTTSSTAT ENSBTAP00000001482/1-1429 RSLPNGPAHA FSSPSESPDS TVDRQKSSLS NNSLKSSKNS SLRTTSSTAT 1201 1250 ENSTTRP00000002333/1-1428 AQTVPIDSFH SLSFTEQIQQ HSLPRSRSRQ SIVSPSSTTQ SLGQSHHSPS bmy_18533T0/1-1300 AQTVPIDSFH SLSFTEQIQQ HSLPRSRSRQ SIVSPSSTTQ SLGQSHHSPS ENSP00000425658/1-1429 AQTVPIDSFH NLSFTEQIQQ HSLPRSRSRQ SIVSPSSTTQ SLGQSHNSPS BACU004195/1-1428 AQTVPIDSFH SLSFTEQIQQ HSLPRSRSRQ SIVSPSSTTQ SLGQSHHSPS ENSBTAP00000001482/1-1429 AQTVPIDSFH SLSFTEQIQQ HSLPRSRSRQ SIVSPSSTTQ SLGQSHHSPS 1251 1300 ENSTTRP00000002333/1-1428 SEFEWSQVKP SLKSTKTNKG GKSENANKSG SAGKKAKQNN SSQPKVLEYE bmy_18533T0/1-1300 SEFEWSQVKP SLKSTKTNKG GKSENASKSG SAGKKAKQNN SSQPKVLEYE ENSP00000425658/1-1429 SEFEWSQVKP SLKSTKASKG GKSENSAKSG SAGKKAKQSN SSQPKVLEYE BACU004195/1-1428 SEFEWSQVKP SLKSTKTNKG GKSENASKSG SAGKKAKQNN SSQPKVLEYE ENSBTAP00000001482/1-1429 SEFEWSQVKP SLKSTKTNKG GKSENSNKSG SAGKKAKQNN SSQPKVLEYE 1301 1350 ENSTTRP00000002333/1-1428 MTQFDKRGPT AKSGTSAPSK QMPAESQCKI -IPSAQQEIG RSQQQFLIHQ bmy_18533T0/1-1300 MTQFDKRGPT AKSGTSAPSK QMPAESQCKI -IPSAQQEIG RSQQQFLIHQ ENSP00000425658/1-1429 MTQFDRRGPI AKSGTAAPPK QMPAESQCKI MIPSAQQEIG RSQQQFLIHQ BACU004195/1-1428 MTQFDKRGPT AKSGTSAPSK QMPAESQCKI -IPSAQQEIG RSQQQFLIHQ ENSBTAP00000001482/1-1429 MTQFDKRGPT AKSGTSAPSK QMPADSQCKI MIPSAQPEIG RSQQQFLIHQ 1351 1400 ENSTTRP00000002333/1-1428 QSGEQKKRNG IMTNPNXXXQ SNQVFLGRVS VPLYTVQDRG HQEVLEGYPS bmy_18533T0/1-1300 QSGEQKKRNG IMTNPNYHLQ SNQVKCRYIL YS-KTYE--- ----LSFLFC ENSP00000425658/1-1429 QSGEQKKRNG IMTNPNYHLQ SNQVFLGRVS VP-RTMQDRG HQEVLEGYPS BACU004195/1-1428 QSGEQKKRNG IMTNPNYHLQ SNQVFLGRVS VP-RTVQDRG HQEVLEGYPS ENSBTAP00000001482/1-1429 QSGEQKKRNG IMTNPNYHLQ SNQVFLGRVS VP-RTIQDRG HQEVLEGYPS 1401 1450 ENSTTRP00000002333/1-1428 SETELSLKQA LKLQIEGSDP SFNYKKETPL bmy_18533T0/1-1300 ETEDIVIGVT LQLLDENIKC LLIC------ ENSP00000425658/1-1429 SETELSLKQA LKLQIEGSDP SFNYKKETPL BACU004195/1-1428 SETELSLKQA LKLQIEGSDP SFNYKKETPL ENSBTAP00000001482/1-1429 SETELSLKQA LKLQIEGSDP SFNYKKETPL