KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:14:29 2014 Check: 00 .. Name: bmy_00139T0/1-285 Len: 543 Check: 1211 Weight: 1.00 Name: ENSTTRP00000015483/1-539 Len: 543 Check: 7040 Weight: 1.00 Name: ENSBTAP00000001490/1-431 Len: 543 Check: 6880 Weight: 1.00 Name: ENSP00000344562/1-472 Len: 543 Check: 9265 Weight: 1.00 Name: BACU020432/1-541 Len: 543 Check: 5666 Weight: 1.00 // 1 50 bmy_00139T0/1-285 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015483/1-539 MAAAAGTAAT PGPESQ-ERP ERAAERPGPR RRGHHERQFR CPDASLGPQR ENSBTAP00000001490/1-431 ---------- ---------- ---------- ---------- ---------- ENSP00000344562/1-472 ---------- ---------- ---------- ---------- ---------- BACU020432/1-541 MAAAAGTAAT PGPESRRQRP ERAAERPGPR RRGHPERQFR CPDASLGPQR 51 100 bmy_00139T0/1-285 ---------- ---------- -MRRR----- ---------- ---------- ENSTTRP00000015483/1-539 TPTPSAEKSQ RERPSAGPGP AMSRRVVRQS KFRHVFGQAA KADQAYEDIR ENSBTAP00000001490/1-431 ---------- ---------- -MSRRVVRQS KFRHVFGQAA KADQAYEDIR ENSP00000344562/1-472 ---------- ---------- -MSRRVVRQS KFRHVFGQAA KADQAYEDIR BACU020432/1-541 -PTPSAEKSQ RERPSAGSGP AMSRRVVRQS KFRHVFGQAA KADQAYEDIR 101 150 bmy_00139T0/1-285 -------RGY RCGGPR---- VVSRGG---- ---------- ---------- ENSTTRP00000015483/1-539 VSKVTWDSSF CAVNPKFLAI IVEAGGGGAF IVLPLAKTGR VDKNYPLVTG ENSBTAP00000001490/1-431 VSKVTWDSAF CAVNPKFLAI IVEAGGGGAF IVLPLAKTGR VDKNYPLVTG ENSP00000344562/1-472 VSKVTWDSSF CAVNPKFLAI IVEAGGGGAF IVLPLAKTGR VDKNYPLVTG BACU020432/1-541 VSKVTWDSSF CAVNPKFLAI IVEAGGGGAF IVLPLAKTGR VDKNYPLVTG 151 200 bmy_00139T0/1-285 ---------- -------VCS SLHQSCL--- ---------- ---------- ENSTTRP00000015483/1-539 HTAPVLDIDW CPHNDNVIAS ASDDTTIMVW QIPDYTPVRN ITEPILTLEG ENSBTAP00000001490/1-431 HTAPVLDIDW CPHNDNVIAS ASDDTTIMVW QIPDYTPVRS ITEPIITLEG ENSP00000344562/1-472 HTAPVLDIDW CPHNDNVIAS ASDDTTIMVW QIPDYTPMRN ITEPIITLEG BACU020432/1-541 HTAPVLDIDW CPHNDNVIAS ASDDTTIMVW QIPDYTPMRN ITEPILTLEG 201 250 bmy_00139T0/1-285 ---------- ---------- --GN----VW ALGRARSVKE LQGIQSG--- ENSTTRP00000015483/1-539 HSKRVGILSW HPTARNVLLS AGGDNVIIIW NVGTGEVLLS LDDIHPDVIH ENSBTAP00000001490/1-431 HSKRVGILSW HPTARNVLLS AGGDNVIIIW NVGTGEVLLS LDDMHPDVIH ENSP00000344562/1-472 HSKRVGILSW HPTARNVLLS AGGDNVIIIW NVGTGEVLLS LDDMHPDVIH BACU020432/1-541 HSKRVGILSW HPTARNVLLS AGGDNVIIIW NVGTGEVLLS LDDIHPDVIH 251 300 bmy_00139T0/1-285 ----TAGGTG LVTP------ ----PVLGQ- ---------- ---------- ENSTTRP00000015483/1-539 SVCWNSNGRL LATTCKDKTL RIIDPRKGQV VAERFANHEG MRPMRAV-TR ENSBTAP00000001490/1-431 SVCWNTNGSL LATTCKDKTL RIIDPRKGQV VA-------- ---------- ENSP00000344562/1-472 SVCWNSNGSL LATTCKDKTL RIIDPRKGQV VAERFAAHEG MRPMRAVFTR BACU020432/1-541 SVCWNSNGRL LATTCKDKTL RIIDPRKGQV VAERFAAHEG MRPMRAIFTR 301 350 bmy_00139T0/1-285 ---------- ---------- --NNFEEPVA LQEMDTSNGV LLPFYDPDSS ENSTTRP00000015483/1-539 QXXXXXXXXX XXXXXXXXXX XXNNFEEPVA LQEMDTSNGV -LPFYDPDSS ENSBTAP00000001490/1-431 ---------- ---------- --NNFEEPVA LQEMDTSNGV LLPFYDPDSS ENSP00000344562/1-472 QGHIFTTGFT RMSQRELGLW DPNNFEEPVA LQEMDTSNGV LLPFYDPDSS BACU020432/1-541 QGHIFTTGFT RMSQRELGLW DPNNFEEPVA LQEMDTSNGV LLPFYDPDSS 351 400 bmy_00139T0/1-285 IVYLCGKGDS SIRYFEITEE PPFVHYLNTF SSKEPQRGMG FMPKRGLDVS ENSTTRP00000015483/1-539 IVYLCGKGDS SIRYFEITEE PPFVHYLNTF SSKEPQRGMG FMPKRGLDVS ENSBTAP00000001490/1-431 IVYLCGKGDS SIRYFEITEE PPFVHYLNTF SSKEPQRGMG FMPKRGLDVS ENSP00000344562/1-472 IVYLCGKGDS SIRYFEITDE PPFVHYLNTF SSKEPQRGMG FMPKRGLDVS BACU020432/1-541 IVYLCGKGDS SIRYFEITEE PPFVHYLNTF SSKEPQRGMG FMPKRGLDVS 401 450 bmy_00139T0/1-285 KCEIARFYKL HERKCEPIIM TVPRKSDLFQ DDLYPDTPGP EPALEADEWL ENSTTRP00000015483/1-539 KCEIARFYKL HERKCEPIIM TVPRKSDLFQ DDLYPDTPGP EPALEADEWL ENSBTAP00000001490/1-431 KCEIARFYKL HERKCEPIVM TVPRKSDLFQ DDLYPDTPGP EPALEADEWL ENSP00000344562/1-472 KCEIARFYKL HERKCEPIIM TVPRKSDLFQ DDLYPDTPGP EPALEADEWL BACU020432/1-541 KCEIARFYKL HERKCEPIIM TVPRKSDLFQ DDLYPDTPGP EPALEADEWL 451 500 bmy_00139T0/1-285 SGQDAEPVLI SLRDGYMPPK HRELRVTKRN ILDVRPPPGP RRSQSASDAP ENSTTRP00000015483/1-539 SGQDAEPVLI SLRDGYMPPK HRELRVTKRN ILDVRPPPGP RRSQSASDAP ENSBTAP00000001490/1-431 SGQDADPVLI SLRDGYVPPK HRELRVTKRN ILDVRPPSGP RRSQSASNAP ENSP00000344562/1-472 SGQDAEPVLI SLRDGYVPPK HRELRVTKRN ILDVRPPSGP RRSQSASDAP BACU020432/1-541 SGQDAEPVLI SLRDGYMPPK HRELRVTKRN ILDVRPPPGP RRSQSASDAP 501 550 bmy_00139T0/1-285 LS-QHTLETL LEEIKALREQ VQAQEQRITS LENMLCELVD GTD ENSTTRP00000015483/1-539 LS-QHTLETL LEEIKALREQ VQAQEQRITS LENMLCELVD GTD ENSBTAP00000001490/1-431 LS-QHTLETL LEEIKALREQ VQAQEQRITS LENMLCELVD GTD ENSP00000344562/1-472 LSQQHTLETL LEEIKALRER VQAQEQRITA LENMLCELVD GTD BACU020432/1-541 LS-QHTLETL LEEIKALREQ VQAQEQRITS LENMLCELVD GTD