KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:14:29 2014 Check: 00 .. Name: ENSTTRP00000007675/1-611 Len: 708 Check: 9126 Weight: 1.00 Name: ENSP00000261304/1-685 Len: 708 Check: 5481 Weight: 1.00 Name: ENSBTAP00000001495/1-685 Len: 708 Check: 6196 Weight: 1.00 Name: bmy_11900T0/1-627 Len: 708 Check: 3836 Weight: 1.00 Name: BACU013144/1-663 Len: 708 Check: 5313 Weight: 1.00 // 1 50 ENSTTRP00000007675/1-611 ---------- ---------- ---------- ---------- ---------- ENSP00000261304/1-685 MAEWLLSASW QRRAKAMTAA AGSAGRAAVP LLLCALLAPG GAYVLDDSDG ENSBTAP00000001495/1-685 MAERLIQASW QRRAKAMTAA AGLAGQAAVP LLLCALLAPS GAYVLDDSEG bmy_11900T0/1-627 ---------- ------MMGK TKTGKQITWE MTFHSSALPK SWLNMGMLDG BACU013144/1-663 ---------- ------MTAA AGSAGQAAVP LLLWALLAPG GAYVLDDSDG 51 100 ENSTTRP00000007675/1-611 ---------- -----ATSRL LVNYPEPYRS QILDYLFKPN FGASLHILKV ENSP00000261304/1-685 LGREFDGIGA VSGGGATSRL LVNYPEPYRS QILDYLFKPN FGASLHILKV ENSBTAP00000001495/1-685 LGREFDGIGA VSGGGATSRL LVNYPEPYRS EILDYLFKPN FGASLHILKV bmy_11900T0/1-627 MHKHSE---- ----KATSRL LVNYPEPYRS QILDYLFKPN FGASLHILKV BACU013144/1-663 LGREFDGIGA VSGGGATSRL LVNYPEPYRS QILDYLFKPN FGASLHILKV 101 150 ENSTTRP00000007675/1-611 EIGGDGQTTD GTEPSHMHYA LDENYFRGYE WWLMKEAKKR NPKITLMGLP ENSP00000261304/1-685 EIGGDGQTTD GTEPSHMHYA LDENYFRGYE WWLMKEAKKR NPNITLIGLP ENSBTAP00000001495/1-685 EIGGDGQTTD GTEPSHMHYA LDENYFRGYE WWLMKEAKKR NPNITLIGLP bmy_11900T0/1-627 EIGGDGQTTD GTEPSHMHYE LDENYFRGYE WWLMKEAKKR NPNXTLMGLP BACU013144/1-663 EIGGDGQTTD GTEPSHMHYE LDENYFRGYE WWLMKEAKKR NPNITLMGLP 151 200 ENSTTRP00000007675/1-611 WSFPGWLGKG FNWPYVNLQL TAYYVVSWIV GAKHYHDLDI DYIGIWNERA ENSP00000261304/1-685 WSFPGWLGKG FDWPYVNLQL TAYYVVTWIV GAKRYHDLDI DYIGIWNERS ENSBTAP00000001495/1-685 WSFPGWLGKG FNWPYVNLQL TAYYIVTWIV GSKHYHDLDI DYIGIWNERA bmy_11900T0/1-627 WSFPGWLGKG FNWPYVNLQL TAYYVVTWIV GAKHYHDLDI DYIGIWNERA BACU013144/1-663 WSFPGWLGKG FNWPYVNLQL TAYYVVTWIV GAKHYHDLDI DYIGIWNERA 201 250 ENSTTRP00000007675/1-611 FDINYIKVLR RMLNYQGLQQ VKIIASDNLW EPISASMLVD SELLRVIDVI ENSP00000261304/1-685 YNANYIKILR KMLNYQGLQR VKIIASDNLW ESISASMLLD AELFKVVDVI ENSBTAP00000001495/1-685 FDINYIKVLR RMLNHQGLQH VKIIASDNLW EPISASMLLD PELLKVIDVI bmy_11900T0/1-627 FDINYIKVLR RMLNYQGLQQ VKIIASDNLW EPISASMLLD SELLKVIDVI BACU013144/1-663 FDINYIKVLR RMLNYQGLQQ VKIIASDNLW EPISASMLLD SELLKVIDVI 251 300 ENSTTRP00000007675/1-611 GAHYPGTRTV KDARLTEKKL WSSEDFSTLN SDVGAGCWGR ILNQNYINGY ENSP00000261304/1-685 GAHYPGTHSA KDAKLTGKKL WSSEDFSTLN SDMGAGCWGR ILNQNYINGY ENSBTAP00000001495/1-685 GAHYPGTLTV KDARLTKKKL WSSEDFSTVN GDMGAGCWGR ILNQNYVNGY bmy_11900T0/1-627 GAHYPGTRTV KDARLTEKKL WSSEDFSTLN SD-------- ---------- BACU013144/1-663 GAHYPGTHTV KDARLTGKKL WSSEDFSTLN SDVGAGCWGR ILNQNYINGY 301 350 ENSTTRP00000007675/1-611 MT-------- ---------- -----ATIAW NLVASYYEQL PYGRCGLMTA ENSP00000261304/1-685 MT-------- ---------- -----STIAW NLVASYYEQL PYGRCGLMTA ENSBTAP00000001495/1-685 MT-------- ---------- -----STIAW NLVASYYQQL PYGRCGLMTA bmy_11900T0/1-627 ---------- ---------- ---------- ---------L PYGHCGLMTA BACU013144/1-663 MTALVDIYIF ITSCFGVSFL SNKSFSTIAW NLVASYYEQL PYGRCGLMTA 351 400 ENSTTRP00000007675/1-611 QEPWSGHYVV EAPIWISXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000261304/1-685 QEPWSGHYVV ESPVWVSAHT TQFTQPGWYY LKTVGHLEKG GSYVALTDGL ENSBTAP00000001495/1-685 QEPWSGHYVV EAPIWVSAHT TQFTQPGWYY LKTVGHLERG GSYVALTDGL bmy_11900T0/1-627 QEPWSGHYVV EAPIWITAHT TQFTQPGWYY LKTVGHLEKG GSYVALTDGL BACU013144/1-663 QEPWSGHYVV EAPVWIAAHT TQFTQPGWYY LKTVGHLEKG GSYVALTDGL 401 450 ENSTTRP00000007675/1-611 XXXXXXXXXX SHKHSMCIRP LLPYFNVSRQ FATFSLKGSF SEIPELQVWY ENSP00000261304/1-685 GNLTIIIETM SHKHSKCIRP FLPYFNVSQQ FATFVLKGSF SEIPELQVWY ENSBTAP00000001495/1-685 GNLTVIVETM SYKHSKCIRP LLPYFNVSHQ FATFDLKGSF SQIQELQVWY bmy_11900T0/1-627 GNLTIIIETM SHKHSMCIRP LLPYFNVSQQ FATFILKGSF SEIPELQVWY BACU013144/1-663 GNLTIIIETM SHKHSMCIRP LLPYFNVSQQ FATFILKGSF ---------- 451 500 ENSTTRP00000007675/1-611 TKLGKPSERF LFKQLDSLWX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000261304/1-685 TKLGKTSERF LFKQLDSLWL LDSDGSFTLS LHEDELFTLT TLTTGRKGSY ENSBTAP00000001495/1-685 TKLGKPSERF LFKQLDSLWL LDSGGSFTLE LQEDELFTLT TLTSGRKGSF bmy_11900T0/1-627 TKLGKPSERF LFKQLDSLWL LDSGGSFTLD LQEDGLLTLT TLSTGSKGSY BACU013144/1-663 ---------- ---------L LDSGGRFTLD LQEDGLLTLT TLSTGSKGSD 501 550 ENSTTRP00000007675/1-611 XXXXXXXXXX XXXXXXXXXX YPFFSEAPNF ADQTGVFEYF MNIEDPGEHR ENSP00000261304/1-685 PLPPKSQPFP STYKDDFNVD YPFFSEAPNF ADQTGVFEYF TNIEDPGEHH ENSBTAP00000001495/1-685 PPPPKSQRFP SVYEDNFNID YPFFSEAPNF ADQTGVFEYY VNMEDPGDHR bmy_11900T0/1-627 PLPPRSQPFP CVYKDDFNVD YPFFSEAPNF ADQTGVFEYF MNIEDPGEHR BACU013144/1-663 PLPPRSQPFP RVYKDDFNVD YPFFSEAPNF ADQTGVFEYF MNIEDPGEHR 551 600 ENSTTRP00000007675/1-611 FTLRQVLNQR PITWAADAFN TISIIGDYKW SNLTIKCDVY LETPEKGGVF ENSP00000261304/1-685 FTLRQVLNQR PITWAADASN TISIIGDYNW TNLTIKCDVY IETPDTGGVF ENSBTAP00000001495/1-685 FTLRQVLNQR PITWAADAFN TISVIGDYSW SNLTIKCDVY IETPEKGGVF bmy_11900T0/1-627 FTLRQVLNQR PITWAADAFN TISIIGDYKW SNLTVKCDVY IETPEKGGVF BACU013144/1-663 FTLRQVLNQR PITWAADAFN TISIIGDYKW SNLTVKCDVY IETPEKGGVF 601 650 ENSTTRP00000007675/1-611 IAGRVNKGGI LIRSARGVFF WIFANGTYRV TGDLAGWIIY TSGHADVTAK ENSP00000261304/1-685 IAGRVNKGGI LIRSARGIFF WIFANGSYRV TGDLAGWIIY ALGRVEVTAK ENSBTAP00000001495/1-685 IAGRVNKGGI LIRSARGIFF WIFANGTYRV TGDLAGWIIY SLGHADVTAK bmy_11900T0/1-627 IAGRVNKGGI LIRSARGVFF WIFANGTYRV TGDLAGWIIY TSGHADVTAK BACU013144/1-663 IAGRVNKGGI LIRSARGVFF WIFANGIYRV TGDLAGWIIY TSGHADVTAK 651 700 ENSTTRP00000007675/1-611 KWYTLTLTIN GEF--GTLNA ----SSENVV LPKNGWAA-G THS--VVAQD ENSP00000261304/1-685 KWYTLTLTIK GHFTSGMLND KSLWTDIPVN FPKNGWAAIG THSFEFAQFD ENSBTAP00000001495/1-685 KWYTLTLTLN GRFSSGKLNG KTLWKNISVN FPENGWAAIG THSFEFAQFD bmy_11900T0/1-627 KWSTLTLTIN GGFSSGTLNG KPLWKNISVN FPKNGWAAVG THSFEFAQFD BACU013144/1-663 KWYTLTLTIN GGFSSGTLNG KPLWKNVSVN FPKNGWAAIG THSFEFAQFD 701 750 ENSTTRP00000007675/1-611 NFRVEAIH ENSP00000261304/1-685 NFLVEATR ENSBTAP00000001495/1-685 NFRVEASH bmy_11900T0/1-627 NFRVEAIH BACU013144/1-663 NFRVEAIH