KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:14:31 2014 Check: 00 .. Name: ENSBTAP00000001507/1-876 Len: 1471 Check: 118 Weight: 1.00 Name: ENSP00000314491/1-876 Len: 1471 Check: 2339 Weight: 1.00 Name: ENSTTRP00000010529/1-875 Len: 1471 Check: 973 Weight: 1.00 Name: BACU012066/1-924 Len: 1471 Check: 594 Weight: 1.00 Name: bmy_16126T0/1-1419 Len: 1471 Check: 6467 Weight: 1.00 // 1 50 ENSBTAP00000001507/1-876 ---------- ---------- ---------- ---------- ---------- ENSP00000314491/1-876 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010529/1-875 ---------- ---------- ---------- ---------- ---------- BACU012066/1-924 ---------- ---------- ---------- ---------- ---------- bmy_16126T0/1-1419 MSGPTWLPPK QPEPARAPQG RGLPRGASGP PAAHGAGAGV GAWGRGEEGP 51 100 ENSBTAP00000001507/1-876 ---------- ---------- ---------- ---------- ---------- ENSP00000314491/1-876 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010529/1-875 ---------- ---------- ---------- ---------- ---------- BACU012066/1-924 ---------- ---------- ---------- ---------- ---------- bmy_16126T0/1-1419 KTAASTSVTL SFPNPTFALS SLNPALQPHP RVNFCPLPSE QCYQAPGGPE 101 150 ENSBTAP00000001507/1-876 ---------- ---------- ---------- ---------- ---------- ENSP00000314491/1-876 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010529/1-875 ---------- ---------- ---------- ---------- ---------- BACU012066/1-924 ---------- ---------- ---------- ---------- ---------- bmy_16126T0/1-1419 DRGLAWVGCH GAPQRSQGLP ADRGGLRPGS LDAEIDSLTS MLAELDGGRG 151 200 ENSBTAP00000001507/1-876 ---------- ---------- ---------- ---------- ---------- ENSP00000314491/1-876 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010529/1-875 ---------- ---------- ---------- ---------- ---------- BACU012066/1-924 ---------- ---------- ---------- ---------- ---------- bmy_16126T0/1-1419 HAPRRPDRQA YEPPQPPAYR SGSGSLKPNG GGVPPPPLPA SPYGGPTPAS 201 250 ENSBTAP00000001507/1-876 ---------- ---------- ---------- ---------- ---------- ENSP00000314491/1-876 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010529/1-875 ---------- ---------- ---------- ---------- ---------- BACU012066/1-924 ---------- ---------- ---------- ---------- ---------- bmy_16126T0/1-1419 YATASTPAGP AFPVQVKVAQ PVRGCGPPRR GASQASGPLP GPHFPLPGRG 251 300 ENSBTAP00000001507/1-876 ---------- ---------- ---------- ---------- ---------- ENSP00000314491/1-876 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010529/1-875 ---------- ---------- ---------- ---------- ---------- BACU012066/1-924 ---------- ---------- ---------- ---------- ---------- bmy_16126T0/1-1419 EVWGAGYRSH REPGPGGKEE AAGVSSSAGG RGGGYGSQVP LSQPPEEELE 301 350 ENSBTAP00000001507/1-876 ---------- ---------- ---------- ---------- ---------- ENSP00000314491/1-876 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010529/1-875 ---------- ---------- ---------- ---------- ---------- BACU012066/1-924 ---------- ---------- ---------- ---------- ---------- bmy_16126T0/1-1419 RLTKKLVHDM NHPPSGEYFG RCGGCGEDVV GDGAGVVALD RVFHVGCFVC 351 400 ENSBTAP00000001507/1-876 ---------- ---------- ---------- ---------- ---------- ENSP00000314491/1-876 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010529/1-875 ---------- ---------- ---------- ---------- ---------- BACU012066/1-924 ---------- ---------- ---------- ---------- ---------- bmy_16126T0/1-1419 STCRAQLRGQ HFYAVERRAY CESCYVATLE KCSTCSQPIL DRILRAMGKA 401 450 ENSBTAP00000001507/1-876 ---------- ---------- ---------- ---------- ---------- ENSP00000314491/1-876 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010529/1-875 ---------- ---------- ---------- ---------- ---------- BACU012066/1-924 ---------- ---------- ---------- ---------- ---------- bmy_16126T0/1-1419 YHPGCFTCVV CHRGLDGIPF TVDATSQIHC IEDFHRKFAP RCSVCGGAIM 451 500 ENSBTAP00000001507/1-876 ---------- ---------- ---------- ---------- ---------- ENSP00000314491/1-876 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010529/1-875 ---------- ---------- ---------- ---------- ---------- BACU012066/1-924 ---------- ---------- ---------- ---------- ---------- bmy_16126T0/1-1419 PEPGQEETVR IVALDRSFHI GCYKCEECGL LLSSEGECQG CYPLDGHILC 501 550 ENSBTAP00000001507/1-876 ---------- ---------- MGDSDDEYDR RRRDKFRRER SDYDRSRERD ENSP00000314491/1-876 ---------- ---------- MGDSDDEYDR RRRDKFRRER SDYDRSRERD ENSTTRP00000010529/1-875 ---------- ---------- MGDSDDEYDR -RRDKFRRER SDYDRSRSYD BACU012066/1-924 ---------- ---------- MGDSDDEYDR RRRDKFRRER SDYDRSRERD bmy_16126T0/1-1419 KACSAWRIQE LSATAPSFRA MGDSDDEYDR RRRDKFRRER SDYDRSRERD 551 600 ENSBTAP00000001507/1-876 ERRRGDDWND ---------- ---------- --------RE WDRGRERRSR ENSP00000314491/1-876 ERRRGDDWND ---------- ---------- --------RE WDRGRERRSR ENSTTRP00000010529/1-875 RHRRGDDWND ---------- ---------- --------RE WDRGRERRSR BACU012066/1-924 ERRRGDDWND RYDGKGLSKS VILGYPTVSY LLLLVRISRE WDRGRERRSR bmy_16126T0/1-1419 ERRRGDDWND ---------- ---------- --------RE WDRGRERRSR 601 650 ENSBTAP00000001507/1-876 GEYRDYDRNR RERFSPPRHE LSPPQKRMRR DWDEHSSDPY HSGYEMPYAG ENSP00000314491/1-876 GEYRDYDRNR RERFSPPRHE LSPPQKRMRR DWDEHSSDPY HSGYEMPYAG ENSTTRP00000010529/1-875 GEYRDYDRNR RERFSPPRHE LSPPQKRMRR DWDEHSSDPY HSGYEMPYAG BACU012066/1-924 GEYRDYDRNR RERFSPPRHE LSPPQKRMRR DWDEHSSDPY HSGYEMPYAG bmy_16126T0/1-1419 GEYRDYDRNR RERFSPPRHE LSPPQKRMRR DWDEHSSDPY HSGYEMPYAG 651 700 ENSBTAP00000001507/1-876 GGGGPAYGPP QPWGHPDVHI VQHPVLPIQA ---------- ---------- ENSP00000314491/1-876 GGGGPTYGPP QPWGHPDVHI MQHHVLPIQA ---------- ---------- ENSTTRP00000010529/1-875 GGGGPAYGPP QPWVHPDVHI MQHHVLPIQA ---------- ---------- BACU012066/1-924 GGGGPAYGPP QPWGHPDVHI MQHHVLPIQA ---------- ---------- bmy_16126T0/1-1419 GGGGPAYGPP QPWGHPDVHI MQHHVLPIQA RGQLATSARH PPTLFPHNQD 701 750 ENSBTAP00000001507/1-876 -------RLG SIAEIDLGVP PPVMKTFKEF LLSLDDAVDE TEAVKRYNDY ENSP00000314491/1-876 -------RLG SIAEIDLGVP PPVMKTFKEF LLSLDDSVDE TEAVKRYNDY ENSTTRP00000010529/1-875 -------RLG SIAEIDLGVP PPVMKTFKEF LLSLDDSVDE TEAVKRYNDY BACU012066/1-924 -------RLG SIAEIDLGVP PPVMKTFKEF LLSLDDSVDE TEAVKRYNDY bmy_16126T0/1-1419 FLTGPPLRLG SIAEIDLGVP PPVMKTFKEF LLSLDDSVDE TEAVKRYNDY 751 800 ENSBTAP00000001507/1-876 KLDFRRQQMQ DFFLAHKDEE WFRSKYHPDE VGKRRQEARG ALQNRLRVFL ENSP00000314491/1-876 KLDFRRQQMQ DFFLAHKDEE WFRSKYHPDE VGKRRQEARG ALQNRLRVFL ENSTTRP00000010529/1-875 KLDFRRQQMQ DFFLAHKDEE WFRSKYHPDE VGKRRQEARG ALQNRLRVFL BACU012066/1-924 KLDFRRQQMQ DFFLAHKDEE WFRSKYHPDE VGKRRQEARG ALQNRLRVFL bmy_16126T0/1-1419 KLDFRRQQMQ DFFLAHKDEE WFRSKYHPDE VGKRRQEARG ALQNRLRVFL 801 850 ENSBTAP00000001507/1-876 SLMESGWFDN LLLDIDKADA IVKMLDAAVI KMEGGTENDL RILEQEEEEE ENSP00000314491/1-876 SLMETGWFDN LLLDIDKADA IVKMLDAAVI KMEGGTENDL RILEQEEEEE ENSTTRP00000010529/1-875 SLMESGWFDN LLLDIDKADA IVKMLDAAVI KMEGGTENDL RILEQEEEEE BACU012066/1-924 SLMESGWFDN LLLDIDKADA IVKMLDAAVI KMEGGTENDL RILEQEEEEE bmy_16126T0/1-1419 SLMESGWFDN LLLDIDKADA IVKMLDAAVI KMEGGTENDL RILEQEEEEE 851 900 ENSBTAP00000001507/1-876 QAGKPGEPNK KEESRVGPGL GDGERKANEK DDKKEDGKQA ENESSSDDKI ENSP00000314491/1-876 QAGKPGEPSK KEEGRAGAGL GDGERKTNDK DEKKEDGKQA ENDSSNDDKT ENSTTRP00000010529/1-875 QAGKPGEPSK KEEGRVGPGP GDGERKTNEK DDKKEDGKQA ENDSSSDDKT BACU012066/1-924 QAGKPGEPSK KEEGRVGPGL GDGERKANEK DDKKEDGKQA ENDSSSDDKA bmy_16126T0/1-1419 QAGKPGEPSK KEEGRVGPGL GDGERKANEK DDKKEDGKQA ENDSSSDDKT 901 950 ENSBTAP00000001507/1-876 KKSEGDGDKE EKKEDSEKEA KKSSKKRNRK HSGDDSFDEG SVSESESESE ENSP00000314491/1-876 KKSEGDGDKE EKKEDSEKEA KKSSKKRNRK HSGDDSFDEG SVSESESESE ENSTTRP00000010529/1-875 KKSEGDGDKE EKKEDSEKEA KKSSKKRNRK HSGDDSFDEG SVSESESESE BACU012066/1-924 KKSEGDGDKE EKKDDSEKEA KKSSKKRNRK HSGDDSFDEG SVSESESESE bmy_16126T0/1-1419 KKSEGDGDKE EKKEDSEKEA KKSSKKRNRK HSGDDSFDEG SVSESESESE 951 1000 ENSBTAP00000001507/1-876 SGQAEEEKEE ADETLKEKEK PKEEEREKPK DAPGLECKPR PLHKTCSLFM ENSP00000314491/1-876 SGQAEEEKEE AEEALKEKEK PKEEEWEKPK DAAGLECKPR PLHKTCSLFM ENSTTRP00000010529/1-875 SGQAEEEKEE AEEALKEKEK PKEEEREKPK DAPGLECKPR PLHKTCSLFM BACU012066/1-924 SGQAEEEKDE AEEALKEKEK PKEEEREKPK DAPGLECKPR PLHKTCSLFM bmy_16126T0/1-1419 SGQAEEEKDE AEEALKEKEK PKEEEREKPK DAPGLECKPR PLHKTCSLFM 1001 1050 ENSBTAP00000001507/1-876 RNIAPNISRA EIISLCKRYP GFMRVALSEP QPERRFFRRG WVTFDRSVNI ENSP00000314491/1-876 RNIAPNISRA EIISLCKRYP GFMRVALSEP QPERRFFRRG WVTFDRSVNI ENSTTRP00000010529/1-875 RNIAPNISRA EIISLCKRYP GFMRVALSEP QPERRFFRRG WVTFDRSVNI BACU012066/1-924 RNIAPNISRA EIISLCKRYP GFMRVALSEP QPERRFFRRG WVTFDRSVNI bmy_16126T0/1-1419 RNIAPNISRA EIISLCKRYP GFMRVALSEP QPERRFFRRG WVTFDRSVNI 1051 1100 ENSBTAP00000001507/1-876 KEICWNLQNI R--------- ---LRECELS PGVNRDLTRR VRNINGITQH ENSP00000314491/1-876 KEICWNLQNI R--------- ---LRECELS PGVNRDLTRR VRNINGITQH ENSTTRP00000010529/1-875 KEICWNLQNI R--------- ---LRECELS PGVNRDLTRR VRNINGITQH BACU012066/1-924 KEICWNLQNI RVSPGSGTVE EEELRECELS PGVNRDLTRR VRNINGITQH bmy_16126T0/1-1419 KEICWNLQNI R--------- ---LRECELS PGVNRDLTRR VRNINGITQH 1101 1150 ENSBTAP00000001507/1-876 KQIVRNDIKL AAKLVHTLDD RTQLWAPEPG TRALPASLPS QNPILKNITD ENSP00000314491/1-876 KQIVRNDIKL AAKLIHTLDD RTQLWASEPG TPPLPTSLPS QNPILKNITD ENSTTRP00000010529/1-875 KQIVRNDIKL AAKLIHTLDD RTQLWASEPG TPPLPASLPS QNPILKNITD BACU012066/1-924 KQIVRNDIKL AAKLIHTLDD RTQLWASEPG TPPLPTSLPS QNPILKNITD bmy_16126T0/1-1419 KQIVRNDIKL AAKLIHTLDD RTQLWASEPG TPPLPTSLPS QNPILKNITD 1151 1200 ENSBTAP00000001507/1-876 YLIEEVSAEE EELLGSSGGA PPEEPPKEGN PAEINVERDE KLIKVLDKLL ENSP00000314491/1-876 YLIEEVSAEE EELLGSSGGA PPEEPPKEGN PAEINVERDE KLIKVLDKLL ENSTTRP00000010529/1-875 YLIEEVSAEE EELLGSSGGA PPEEPPKEGN PAEINVERDE KLIKVLDKLL BACU012066/1-924 YLIEEVSAEE EELLGSSGGA PPEEPPKEGN PAEINVERDE KLIKVLDKLL bmy_16126T0/1-1419 YLIEEVSAEE EELLGSSGGA PPEEPPKEGN PAEINVERDE KLIKVLDKLL 1201 1250 ENSBTAP00000001507/1-876 LYLRIVHSLD YYNTCEYPNE DEMPNRCGII HVRGPMPPNR ISHGEVLEWQ ENSP00000314491/1-876 LYLRIVHSLD YYNTCEYPNE DEMPNRCGII HVRGPMPPNR ISHGEVLEWQ ENSTTRP00000010529/1-875 LYLRIVHSLD YYNTCEYPNE DEMPNRCGII HVRGPMPPNR ISHGEVLEWQ BACU012066/1-924 LYLRIVHSLD YYNTCEYPNE DEMPNRCGIV HVRGPMPPNR ISHGEVLEWQ bmy_16126T0/1-1419 LYLRIVHSLD YYNTCEYPNE DEMPNRCGII HVRGPMPPNR ISHGEVLEWQ 1251 1300 ENSBTAP00000001507/1-876 KTFEEKLTPL LSVRESLSEE EAQKMGRKDP EQEVEKFVTS NTQELGKDKW ENSP00000314491/1-876 KTFEEKLTPL LSVRESLSEE EAQKMGRKDP EQEVEKFVTS NTQELGKDKW ENSTTRP00000010529/1-875 KTFEEKLTPL LSVRESLSEE EAQKMGRKDP EQEVEKFVTS NTQELGKDKW BACU012066/1-924 KTFEEKLTPL LSVRESLSEE EAQKMGRKDP EQEVEKFVTS NTQELGKDKW bmy_16126T0/1-1419 KTFEEKLTPL LSVRESLSEE EAQKMGRKDP EQEVEKFVTS NTQELGKDKW 1301 1350 ENSBTAP00000001507/1-876 LCPLSGKKFK GPEFVRKHIF NKHAEKIEEV KKEVAFFNNF LTDAKRPALP ENSP00000314491/1-876 LCPLSGKKFK GPEFVRKHIF NKHAEKIEEV KKEVAFFNNF LTDAKRPALP ENSTTRP00000010529/1-875 LCPLSGKKFK GPEFVRKHIF NKHAEKIEEV KKEVAFFNNF LTDAKRPALP BACU012066/1-924 LCPLSGKKFK GPEFVRKHIF NKHAEKIEEV KKEVAFFNNF LTDAKRPALP bmy_16126T0/1-1419 LCPLSGKKFK GPEFVRKHIF NKHAEKIEEV KKEVAFFNNF LTDAKRPALP 1351 1400 ENSBTAP00000001507/1-876 EIKPAQPPGP AQI------- -LPPGLTPGL PYPHQTPQGL MPYGQPRPPI ENSP00000314491/1-876 EIKPAQPPGP AQI------- -LPPGLTPGL PYPHQTPQGL MPYGQPRPPI ENSTTRP00000010529/1-875 EIKPAQPPGP AQI------- -LPPGLTPGL PYPHQTPQGL MPYGQPRPPI BACU012066/1-924 EIKPAQPPGP AQIIHVPVRI VLPPGLTPGL PYPHQTPQGL MPYGQPRPPI bmy_16126T0/1-1419 EIKPAQPPGP AQ-------- ----SLTPGL PYPHQTPQGL MPYGQPRPPI 1401 1450 ENSBTAP00000001507/1-876 LGYGAGAVRP AVPTGGPPYP HAPYGAGRGN YDAFRGQGGY PGKPRNRMVR ENSP00000314491/1-876 LGYGAGAVRP AVPTGGPPYP HAPYGAGRGN YDAFRGQGGY PGKPRNRMVR ENSTTRP00000010529/1-875 LGYGAGAVRP AVPTGGPPYP HAPYGAGRGN YDAFRGQGGY PGKPRNRMVR BACU012066/1-924 LGYGAGAVRP AVPAGGPPYP HAPYGAGRGN YDAFRGQGGY PGKPRNRMVR bmy_16126T0/1-1419 LGYGAGAVRP AVPTGGPPYP HAPYGAGRGN YDAFRGQGGY PGKPRNRMVR 1451 1500 ENSBTAP00000001507/1-876 GDPRAIVEYR DLDAPDDVDF F ENSP00000314491/1-876 GDPRAIVEYR DLDAPDDVDF F ENSTTRP00000010529/1-875 GDPRAIVEYR DLDAPDDVDF F BACU012066/1-924 GDPRAIVEYR DLDAPDDVDF F bmy_16126T0/1-1419 GDPRAIVEYR DLDAPDDVDF F