KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:14:38 2014 Check: 00 .. Name: bmy_05911T0/1-561 Len: 732 Check: 6925 Weight: 1.00 Name: ENSP00000221891/1-651 Len: 732 Check: 5650 Weight: 1.00 Name: ENSBTAP00000001531/1-642 Len: 732 Check: 3217 Weight: 1.00 Name: BACU000613/1-638 Len: 732 Check: 8758 Weight: 1.00 Name: ENSTTRP00000003676/1-646 Len: 732 Check: 9468 Weight: 1.00 // 1 50 bmy_05911T0/1-561 MGPASPAARG LG------PL PLLLPLLLLL LRAQLAVGSL AGGSPSAAEA ENSP00000221891/1-651 MGPASPAARG LSRRPGQPPL PLLLPLLLLL LRAQPAIGSL AGGSPGAAEA ENSBTAP00000001531/1-642 MGPASPATRG LG------PL LRLLPLLMLL LRMQLAEGNL AGGSPSAAEA BACU000613/1-638 MGPASPAARG LG------PL PLLLPLLLLL LRAQLAVGSL AGGSPSAAEA ENSTTRP00000003676/1-646 MGPAIPAARG LG------PL PLLLPLLLLL LRAQLAVGSL AGGSPSAAEA 51 100 bmy_05911T0/1-561 PGSAQVAGLC GRPTLHRDLR TGRWEPDPQL SRRCLRDPQR VLEYCRQMYP ENSP00000221891/1-651 PGSAQVAGLC GRLTLHRDLR TGRWEPDPQR SRRCLRDPQR VLEYCRQMYP ENSBTAP00000001531/1-642 PGSAQVAGLC GRPTLHRDLR TGRWEPDPQL SRRCLRDPQR VLEYCRQMYP BACU000613/1-638 PGSAQVAGLC GRPTLHRDLR TGRWEPDPQL SRRCLRDPQR VLEYCRQMYP ENSTTRP00000003676/1-646 PGSAQVAGLC GRPTLHRDLR TGRWEPDPQL SRRCLRDPQR VLEYCRQMYP 101 150 bmy_05911T0/1-561 ELQIARVEQA TQAIPVEQWC GDAWGGRCAH PHHQVVPFRC LEGEFVSEAL ENSP00000221891/1-651 ELQIARVEQA TQAIPMERWC GGSRSGSCAH PHHQVVPFRC LPGEFVSEAL ENSBTAP00000001531/1-642 ELQIARVEQA TQAIPMEQWC GGTRGGHCAH PHHQVVPFHC LPGEFVSEAL BACU000613/1-638 ELQIARVEQA TQAIPMEQWC GDARGGRCAH PHHQVVPFRC LEGEFVSEAL ENSTTRP00000003676/1-646 ELQIARVEQA TQAIPMEQWC GDARGGRCAH PHHQVVPFRC LEGEFVSEAL 151 200 bmy_05911T0/1-561 LVPEGCRFLH QERMDQCESS TRRRQEAQEV RTQPTRLHPP RTQGSSPLTP ENSP00000221891/1-651 LVPEGCRFLH QERMDQCESS TRRHQEAQE- ---------- ---------- ENSBTAP00000001531/1-642 LVPEGCRFLH QERMDQCESS ARRQQEAQE- ---------- ---------- BACU000613/1-638 LVPEGCRFLH QERMDQCESS TRRRQEAQE- ---------- ---------- ENSTTRP00000003676/1-646 LVPEGCRFLH QERMDQCESS TRRRQEAQE- ---------- ---------- 201 250 bmy_05911T0/1-561 SSSRTQESGP QPSLPNGTEP GIQAPSPISP QDPGIQALPL PSVTPQSWHL ENSP00000221891/1-651 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001531/1-642 ---------- ---------- ---------- ---------- ---------- BACU000613/1-638 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003676/1-646 ---------- ---------- ---------- ---------- ---------- 251 300 bmy_05911T0/1-561 GPLFPQACSS QGLILHGSGM LLPCGADRFR GVEYVCCPPP VTPNPSGTAV ENSP00000221891/1-651 ------ACSS QGLILHGSGM LLPCGSDRFR GVEYVCCPPP GTPDPSGTAV ENSBTAP00000001531/1-642 ------ACSS QGLILHGSGM LLPCGADRFR GVEYVCCPPP ATPNPSGTAV BACU000613/1-638 ------ACSS QGLILHGSGM LLPCGADRFR GVEYVCCPPP VTPNPSGTAV ENSTTRP00000003676/1-646 ------ACSS QGLILHGSGM LLPCGADRFR GVEYVCCPPP VTPNPSGTAV 301 350 bmy_05911T0/1-561 GDPSTRSWPP GGRVEGGEDE EEEESFLQPV DDYFVEPPRA EEEEEEERVP ENSP00000221891/1-651 GDPSTRSWPP GSRVEGAEDE EEEESFPQPV DDYFVEPPQA --EEEEETVP ENSBTAP00000001531/1-642 GDPSTRSWPP GGRVERGDDE EEEESFLQPV DDYFVEPPRA -DEEEEDRVP BACU000613/1-638 GDPSTRSWPP GGRVEGGEDE EEEESFLQPV DDYFVEPPRA EEEEEEERVP ENSTTRP00000003676/1-646 GDPSTRSWPP GGRVEGGEDE EEEESFLQPV DDYFVEPPRA EEEEEEERVP 351 400 bmy_05911T0/1-561 PSSSHPPSGV SKVTPTPRPT DGVDVYFGMP GEISEHEGFL RAKMDLEERR ENSP00000221891/1-651 PPSSHTLAVV GKVTPTPRPT DGVDIYFGMP GEISEHEGFL RAKMDLEERR ENSBTAP00000001531/1-642 PSSSQTPAGV SKVTPTPRPT DGVDVYFGMP GEISEHEGFL RAKMDLEERR BACU000613/1-638 PSSSHTPAGV SKVTPTPRPT DGVDVYFGMP GEISEHEGFL RAKMDLEERR ENSTTRP00000003676/1-646 PSSSHHPAGV SKVTPTPRPT DGVDVYFGMP GEISEHEGFL RAKMDLEERR 401 450 bmy_05911T0/1-561 MRQINEVMVM REWAMADNQS KNLPKADRQA LNEHFQSILQ TLEEQVSGER ENSP00000221891/1-651 MRQINE--VM REWAMADNQS KNLPKADRQA LNEHFQSILQ TLEEQVSGER ENSBTAP00000001531/1-642 MRQINE--VM REWAMADNQS KNLPKADRQA LNEHFQSILQ TLEEQVSGER BACU000613/1-638 MRQINE--VM REWAMADNQS KNLPKADRQA LNEHFQSILQ TLEEQVSGER ENSTTRP00000003676/1-646 MRQINE--VM REWAMADNQS KNLPKADRQA LNEHFQSILQ TLEEQVSGER 451 500 bmy_05911T0/1-561 QRLVETHATR VIALINDQRR AALEGFLAAL QADPPQPERV LLALRRYLRA ENSP00000221891/1-651 QRLVETHATR VIALINDQRR AALEGFLAAL QADPPQAERV LLALRRYLRA ENSBTAP00000001531/1-642 QRLVETHATR VIALINDQRR AALEGFLAAL QGDPPQPERV LLALRRYLRA BACU000613/1-638 QRLVETHATR VIALINDQRR AALEGFLAAL QGDPPQPERV LLALRRYLRA ENSTTRP00000003676/1-646 QRLVETHATR VTALINDQRR AALEGFLAAL QEDPPQPERV LLALRRYLRA 501 550 bmy_05911T0/1-561 ERKEQRHTLR HYQHVAAVDP EKAQQTRFQ- ---------R NSSTLNTWA- ENSP00000221891/1-651 EQKEQRHTLR HYQHVAAVDP EKAQQMRFQV HTHLQVIEER VNQSLGLLDQ ENSBTAP00000001531/1-642 EQKEQRHTLR HYQHVAAVDP EKAQQMRFQV QTHLQVIEER MNQSLGLLDQ BACU000613/1-638 EQKEQRHTLR HYQHVAAVDP EKAQQMRFQV QTHLQVIEER MNQSLGLLDQ ENSTTRP00000003676/1-646 ERKEQRHTLR HYQHVAAVDP EKAQQTRLQV QTHLQVIEER MNQSLGLLDQ 551 600 bmy_05911T0/1-561 ---------- ---------- ---------- ---------- --PVNWK--- ENSP00000221891/1-651 NPHLAQELRP QIQELLHSEH LGPSELEAPA PGGSSEDKGG LQPPDSKDAD ENSBTAP00000001531/1-642 NPRLAQELRP QIQELLHSEH LGPNELEAPA SGGSSEDKSG LQPLDPKG-D BACU000613/1-638 NPRLAQELRP QIQELLHSEH LGPSELEAPA PGGSNEDKGG LQPLDSKD-- ENSTTRP00000003676/1-646 NPRLAQELRP QIQELLHSEH LGPSELEVPA PGGSNEDKGG LQPLDSKDAD 601 650 bmy_05911T0/1-561 ---------- ---------- ---PL----- ------PRGA AMRT------ ENSP00000221891/1-651 TPMTLPKGST EQDAASPEKE KMNPLEQYER KVNASVPRGF PFHSSEIQRD ENSBTAP00000001531/1-642 TPMALPK--- EQDATSSGKD KMTPLEQYER KVNMSIPRGF PFHSSEIQRD BACU000613/1-638 -------GST EQDAASSGKE KMSPLEQYER KVNVSVPRGF PFHSSEIQRD ENSTTRP00000003676/1-646 TPMALPKGST EQDAASSEKE KMSPLEQYER KVNVSVPRGF PFHSSEIQRD 651 700 bmy_05911T0/1-561 ---------- ---------- ---------- ---------- ---------- ENSP00000221891/1-651 ELAPAGTGVS REAVSGLLIM GAGGGSLIVL SMLLLRRKKP YGAISHGVVE ENSBTAP00000001531/1-642 ELAPAGTGVS REAVSGLLIM GAGGGSLIVL SLLLLRRKKP YGAISHGVVE BACU000613/1-638 ELAPAGTGMS REAVSGLLIM GAGGGSLVIL SMLLLRRKKP YGAISHGVVE ENSTTRP00000003676/1-646 EL-PAGTGMS REAVSGLLIM GAGGGSLIIL SMLLLRRKKP YGAISHGVVE 701 750 bmy_05911T0/1-561 ---------- ------RVGY SPWIPRMVS- -- ENSP00000221891/1-651 VDPMLTLEEQ QLRELQRHGY ENPTYRFLEE RP ENSBTAP00000001531/1-642 VDPMLTLEEQ QLRELQRHGY ENPTYRFLEE RP BACU000613/1-638 VDPMLTLEEQ QLRELQRHGY ENPTYRFLEE RP ENSTTRP00000003676/1-646 VDPMLTLEEQ QLRELQRHGY ENPTYRFLEE RP