KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:14:54 2014 Check: 00 .. Name: ENSTTRP00000011284/1-948 Len: 1002 Check: 3383 Weight: 1.00 Name: ENSBTAP00000001576/1-946 Len: 1002 Check: 4454 Weight: 1.00 Name: ENSP00000350199/1-949 Len: 1002 Check: 3547 Weight: 1.00 Name: bmy_01624T0/1-875 Len: 1002 Check: 6015 Weight: 1.00 Name: BACU003348/1-984 Len: 1002 Check: 7000 Weight: 1.00 // 1 50 ENSTTRP00000011284/1-948 MTDSKYFTTT KKG------- ---------- ---------- ---------E ENSBTAP00000001576/1-946 MTDSKYFTTT KKG------- ---------- ---------- ---------E ENSP00000350199/1-949 MTDSKYFTTT KKG------- ---------- ---------- ---------E bmy_01624T0/1-875 -MLPPFL--- --G------- ---------- ---------- ---------E BACU003348/1-984 MSLSPFHFLN FSGWSHYTYS LPGSITGCRW RVVHSAGAAN FMLLVRLQRE 51 100 ENSTTRP00000011284/1-948 IFELKAELNS DKKEKKKEAV KKVIASMTVG KDVSALFPDV VNCMQTDNLE ENSBTAP00000001576/1-946 IFELKAELNS DKKEKKKEAV KKVIASMTVG KDVSALFPDV VNCMQTDNLE ENSP00000350199/1-949 IFELKAELNS DKKEKKKEAV KKVIASMTVG KDVSALFPDV VNCMQTDNLE bmy_01624T0/1-875 IFELKAELNS DKKEKKKEAV KKVIASMTVG KDVSALFPDV VNCMQTDNLE BACU003348/1-984 IFELKAELNS DKKEKKKEAV KKVIASMTVG KDVSALFPDV VNCMQTDNLE 101 150 ENSTTRP00000011284/1-948 LKKLVYLYLM NYAKSQPDMA IMAVNTFVKD CEDPNPLIRA LAVRTMGCIR ENSBTAP00000001576/1-946 LKKLVYLYLM NYAKSQPDMA IMAVNTFVKD CEDPNPLIRA LAVRTMGCIR ENSP00000350199/1-949 LKKLVYLYLM NYAKSQPDMA IMAVNTFVKD CEDPNPLIRA LAVRTMGCIR bmy_01624T0/1-875 LKKLVYLYLM NYAKSQPDMA IMAVNTFVKD CEDPNPLIRA LAVRTMGCIR BACU003348/1-984 LKKLVYLYLM NYAKSQPDMA IMAVNTFVKD CEDPNPLIRA LAVRTMGCIR 151 200 ENSTTRP00000011284/1-948 VDKITEYLCE PLRKCLKDED PYVRKTAAVC VAKLHDINAQ LVEDQGFLDT ENSBTAP00000001576/1-946 VDKITEYLCE PLRKCLKDED PYVRKTAAVC VAKLHDINAQ LVEDQGFLDT ENSP00000350199/1-949 VDKITEYLCE PLRKCLKDED PYVRKTAAVC VAKLHDINAQ LVEDQGFLDT bmy_01624T0/1-875 VDKITEYLCE PLRKCLKDED PYVRKTAAVC VAKLHDINAQ LVEDQGFLDT BACU003348/1-984 VDKITEYLCE PLRKCLKDED PYVRKTAAVC VAKLHDINAQ LVEDQGFLDT 201 250 ENSTTRP00000011284/1-948 LKDLISDSNP MVVANAVAAL SEIAESHPSS NLLDLNPQSI NKLLTALNEC ENSBTAP00000001576/1-946 LKDLISDSNP MVVANAVAAL SEIAESHPSS NLLDLNPQSI NKLLTALNEC ENSP00000350199/1-949 LKDLISDSNP MVVANAVAAL SEIAESHPSS NLLDLNPQSI NKLLTALNEC bmy_01624T0/1-875 LKDLISDSNP MVVANAVAAL SEIAESHPSS NLLDLNPQSI NKLLTALNEC BACU003348/1-984 LKDLISDSNP MVVANAVAAL SEIAESHPSS NLLDLNPQSI NKLLTALNEC 251 300 ENSTTRP00000011284/1-948 TEWGQIFILD CLANYTPKDD REAQSICERV TPRLSHANSA VVLSAVKVLM ENSBTAP00000001576/1-946 TEWGQIFILD CLANYTPKDD REAQSICERV TPRLSHANSA VVLSAVKVLM ENSP00000350199/1-949 TEWGQIFILD CLANYMPKDD REAQSICERV TPRLSHANSA VVLSAVKVLM bmy_01624T0/1-875 TEWGQIFILD CLANYTPKDD REAQ------ ---------- ---------- BACU003348/1-984 TEWGQIFILD CLANYTPKDD REAQ------ --RLSHANSA VVLSAVKVLM 301 350 ENSTTRP00000011284/1-948 KFMEMLSKDL DYYGTLLKKL APPLVTLLSA EPELQYVALR NINLI----- ENSBTAP00000001576/1-946 KFMEMLSKDL DYYGTLLKKL APPLVTLLSA EPELQYVALR NINLI----- ENSP00000350199/1-949 KFMEMLSKDL DYYGTLLKKL APPLVTLLSA EPELQYVALR NINLI----- bmy_01624T0/1-875 ---------- ---------- ---------- ---------R AYDLL----- BACU003348/1-984 KFMEMLSKDL DYYGTLLKKL APPLVTLLSA EPELQYVALR NINLIVQKRA 351 400 ENSTTRP00000011284/1-948 ----V----- --QKRPEILK HEMKVFFVKY NDPIYVKLEK LDIMIRLASQ ENSBTAP00000001576/1-946 ----V----- --QKRPEVLK HEMKVFFVKY NDPIYVKLEK LDIMIRLASQ ENSP00000350199/1-949 ----V----- --QKRPEILK HEMKVFFVKY NDPIYVKLEK LDIMIRLASQ bmy_01624T0/1-875 ----FALRAT LPTTRPEILK HEMKVFFVKY NDPIYVKLEK LDIMIRLASQ BACU003348/1-984 CDLLFALRAT LPTTRPEILK HEMKVFFVKY NDPIYVKLEK LDIMIRLASQ 401 450 ENSTTRP00000011284/1-948 ANIAQVLAEL KEYATEVDVD FVRKAVRAIG RCAIKVEQSA ERCVSTLLDL ENSBTAP00000001576/1-946 ANIAQVLAEL KEYATEVDVD FVRKAVRAIG RCAIKVEQSA ERCVSTLLDL ENSP00000350199/1-949 ANIAQVLAEL KEYATEVDVD FVRKAVRAIG RCAIKVEQSA ERCVSTLLDL bmy_01624T0/1-875 ANIAQVLAEL KEYATEVDVD FVRKAVRAIG RCAIKVEQSA ERCVSTLLDL BACU003348/1-984 ANIAQVLAEL KEYATEVDVD FVRKAVRAIG RCAIKVEQSA ERCVSTLLDL 451 500 ENSTTRP00000011284/1-948 IQTKVNYVVQ EAIVVIKDIF RKYPNKYEIV TATL-KNLNS LNDPEARATX ENSBTAP00000001576/1-946 IQTKVNYVVQ EAIVVIKDIF RKYPNKYESV IATLCENLDS LDEPEARAAM ENSP00000350199/1-949 IQTKVNYVVQ EAIVVIKDIF RKYPNKYESV IATLCENLDS LDEPEARAAM bmy_01624T0/1-875 IQTKVNYVVQ EAIVVIKDIF RKYPNKYESV IATLCENLDS LDEPEARAAM BACU003348/1-984 IQTKVNYVVQ EAIVVIKDIF RKYPNKYESV IATLCENLDS LDEPEARAAM 501 550 ENSTTRP00000011284/1-948 XXXXXXXXXX XXXXXXXXXX XLEGFHDEST QVQLQLLTAI VKLFLKKPTE ENSBTAP00000001576/1-946 IWIVGEYAER IDNADELLES FLEGFHDEST QVQLQLLTAI VKLFLKKPTE ENSP00000350199/1-949 IWIVGEYAER IDNADELLES FLEGFHDEST QVQLQLLTAI VKLFLKKPTE bmy_01624T0/1-875 IWIVGEYAER IDNADELLES FLEGFHDEST QVQLQLLTAI VKLFLKKPTE BACU003348/1-984 IWIVGEYAER IDNADELLES FLEGFHDEST QVQLQLLTAI VKLFLKKPTE 551 600 ENSTTRP00000011284/1-948 TQELVQQVLS LATQDSDNPD LRDRGYIYWR LLSTDPVAAK EVVLAEKPLI ENSBTAP00000001576/1-946 TQELVQQVLS LATQDSDNPD LRDRGYIYWR LLSTDPVAAK EVVLAEKPLI ENSP00000350199/1-949 TQELVQQVLS LATQDSDNPD LRDRGYIYWR LLSTDPVAAK EVVLAEKPLI bmy_01624T0/1-875 TQELVQQVLS LATQDSDNPD LRDRGYIYWR LLSTDPVAAK EVVLAEKPLI BACU003348/1-984 TQELVQQVLS LATQDSDNPD LRDRGYIYWR LLSTDPVAAK EVVLAEKPLI 601 650 ENSTTRP00000011284/1-948 SEETDLIEPT LLDELICYIG TLASVYHKPP SAFXXXXXXX XXXXXXXXXX ENSBTAP00000001576/1-946 SEETDLIEPT LLDELICYIG TLASVYHKPP SAFVEGGRGV VHKSLPPRTA ENSP00000350199/1-949 SEETDLIEPT LLDELICYIG TLASVYHKPP SAFVEGGRGV VHKSLPPRTA bmy_01624T0/1-875 SEETDLIEPT LLDELICYIG TLASVYHKPP SAFVEGGRGV VHKSLPPRTA BACU003348/1-984 SEETDLIEPT LLDELICYIG TLASVYHKPP SAFVEGGRGV VHKSLPPRTA 651 700 ENSTTRP00000011284/1-948 XSESTESPET APAGAPPGEQ LDVIPTQGDL LGDLLNLDLG PPVSGPPLAT ENSBTAP00000001576/1-946 SSESTESPET APAGAPPGEQ LDAVPTQGDL LGDLLNLDLG PPVSGPPLAA ENSP00000350199/1-949 SSESAESPET APTGAPPGEQ PDVIPAQGDL LGDLLNLDLG PPVSGPPLAT bmy_01624T0/1-875 SSESTESPET APAGVPPGEQ LDVIPTQGDL LGDLLNLDLG PPVSGPPLAT BACU003348/1-984 SSESTESPET APAGAPPGEQ LDVIPTQGDL LGDLLNLDLG PPVSGPPLAT 701 750 ENSTTRP00000011284/1-948 SSVQMGAVDL LGSGLDSLMG DEPEGIGASN FVSPP-AAAV PANLGAPMGS ENSBTAP00000001576/1-946 SAVQMGAVDL LGGGLDSLMG DEPEGIGAPS FVAPP-AAAV PANLGAPMGS ENSP00000350199/1-949 SSVQMGAVDL LGGGLDSLMG DEPEGIGGTN FVAPP-TAAV PANLGAPIGS bmy_01624T0/1-875 SSVQMGAVDL LGSGLDSL-- -----IGAPN FVSPP-AAAV PANLGAPMGS BACU003348/1-984 SSVQMGAVDL LGSGLDGL-- -----IGTPN FVSPPAAAAV PANLGAPMGS 751 800 ENSTTRP00000011284/1-948 GLSDLFDLTS GVGTLSGSYV APKAVWLPAM KAKGLEISGT FTRQVGSISM ENSBTAP00000001576/1-946 GLSDLFDLTS GVGTLSGSYV APKAVWLPAM KAKGLEISGT FTRQAGTISM ENSP00000350199/1-949 GLSDLFDLTS GVGTLSGSYV APKAVWLPAM KAKGLEISGT FTRQVGSISM bmy_01624T0/1-875 GLSDLFDLTS GVGTLSGSYV APKAVWLPAM KAKGLEISGT FTRQVGSISM BACU003348/1-984 GLSDLFDLTS GVGTLSGSYV APKAVWLPAM KAKGLEISGT FTRQVGSISM 801 850 ENSTTRP00000011284/1-948 DLQLTNKALQ VMTDFAIQFN RNSFGLAPAA PLQVHAPLSP NQTVEISLPL ENSBTAP00000001576/1-946 DLQLTNKALQ VMTDFAIQFN RNSFGLAPAA PLQVHAPLSP TQTVEISLPL ENSP00000350199/1-949 DLQLTNKALQ VMTDFAIQFN RNSFGLAPAT PLQVHAPLSP NQTVEISLPL bmy_01624T0/1-875 DLQLTNKALQ VMTDFAIQFN RNSFGLAPAA PLQVHAPLSP NQTVEISLPL BACU003348/1-984 DLQLTNKALQ VMTDFAIQFN RNSFGLAPAA PLQVHAPLSP NQTVEISLPL 851 900 ENSTTRP00000011284/1-948 NTVGSVMKME PLNNLQVAVK NNIDVFYFST LYPLHILFVE DGKMDRQMFL ENSBTAP00000001576/1-946 STAGSVMKTE PLNSLQVAVK NNIDVFYFST LYPLHILFVE DGKMDRQMFL ENSP00000350199/1-949 STVGSVMKME PLNNLQVAVK NNIDVFYFST LYPLHILFVE DGKMDRQMFL bmy_01624T0/1-875 NTVGSVMKME PLNNLQVAVK NNIDVFYFST LYPLHILFVE DGKMDRQMFL BACU003348/1-984 NTVGSVMKME PLNNLQVAVK NNIDVFYFST LYPLHILFVE DGKMDRQMFL 901 950 ENSTTRP00000011284/1-948 ATWKDIPNEN EAQFQIRDCP LNAEAVSSRL QSSNIFTIAK RNVEGQDMLY ENSBTAP00000001576/1-946 ATWKDIPNEN EAQFQIRDCP LNAEAVSSRL QSSNIFTVAR RNVEGQDMLY ENSP00000350199/1-949 ATWKDIPNEN EAQFQIRDCP LNAEAASSKL QSSNIFTVAK RNVEGQDMLY bmy_01624T0/1-875 ATWKDIPNEN EAQFQIRDCP LNAEAVSSRL QSSNIFTVAK RNVEGQDMLY BACU003348/1-984 ATWKDIPNEN EAQFQIRDCP LNAEAVSSRL QSSNIFTVAK RNVEGQDMLY 951 1000 ENSTTRP00000011284/1-948 QSLKLTNGIW VLAELRIQPG NPSFMDLELS LKCRAPEVSQ HVYQAYETIL ENSBTAP00000001576/1-946 QSLKLTNGIW VLAELRIQPG NPS---FTLS LKCRAPEVSQ HVYQAYETIL ENSP00000350199/1-949 QSLKLTNGIW VLAELRIQPG NPSCTDLELS LKCRAPEVSQ HVYQAYETIL bmy_01624T0/1-875 QSLKLTNGIW VLAELRIQPG NPS---FMLS LKCRAPEVSQ HVYQAYETIL BACU003348/1-984 QSLKLTNGIW VLAELRIQPG NPS---FMLS LKCRAPEVSQ HVYQAYETIL 1001 1050 ENSTTRP00000011284/1-948 KN ENSBTAP00000001576/1-946 KN ENSP00000350199/1-949 KN bmy_01624T0/1-875 KN BACU003348/1-984 KN