KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:14:55 2014 Check: 00 .. Name: bmy_01987T0/1-279 Len: 320 Check: 5221 Weight: 1.00 Name: ENSP00000363054/1-276 Len: 320 Check: 4837 Weight: 1.00 Name: ENSBTAP00000001580/1-274 Len: 320 Check: 6110 Weight: 1.00 Name: ENSTTRP00000004600/1-296 Len: 320 Check: 4709 Weight: 1.00 // 1 50 bmy_01987T0/1-279 MSYGPLDMYR NPGASGPPLR DFNSIIQTCS GNIQRISQAS ---------- ENSP00000363054/1-276 MSYGPLDMYR NPGPSGPQLR DFSSIIQTCS GNIQRISQAT AQIKNLMSQL ENSBTAP00000001580/1-274 MSYGPLDMYR NPGGSGPPLR DFNSIIQTCS GNIQRISQAT AQIKNLMSQL ENSTTRP00000004600/1-296 MSYGPLDMYR NPGASGPPLR DFNSIIQTCS GNIQRISQAT AQIKNLMSQL 51 100 bmy_01987T0/1-279 ---------- EPGQQLQHST NQLAKETNEL LKELGSLPLP LSTSEQRQQK ENSP00000363054/1-276 GTKQDSSKLQ ENLQQLQHST NQLAKETNEL LKELGSLPLP LSTSEQRQQR ENSBTAP00000001580/1-274 GTKQDSSKLQ ENLQQLQHST NQLAKETNEL LKELGSLPLP LSTSEQRQQK ENSTTRP00000004600/1-296 GTKQDSSKLQ ENLQQLQHST NQLAKETNEL LKELGSLPLP LSTSEQRQQK 101 150 bmy_01987T0/1-279 LQKERLMNDF SAALNNFQAV QRRVSEKEKE SIARARAGSR LSRSWSPGTV ENSP00000363054/1-276 LQKERLMNDF SAALNNFQAV QRRVSEKEKE SIARARAGSR LS-------- ENSBTAP00000001580/1-274 LQKERLMNDF SAALNSFQAV QRRVSEKEKE SIARARAGSR LS-------- ENSTTRP00000004600/1-296 LQKERLMNDF SAALNNFQAV QRRVSEKEKE SIARARAGSR LS-------- 151 200 bmy_01987T0/1-279 FGQALLAAEV MLICLMHTLE RRNQLVCLSP C--------- ---------- ENSP00000363054/1-276 ---------- -----AEERQ REEQLVSFDS ---------- ---------- ENSBTAP00000001580/1-274 ---------- -----AEERQ REEQLVSFDS ---------- ---------- ENSTTRP00000004600/1-296 ---------- -----VEERQ REEQLVSFDS SLSLDVKNVA HFIDTRGLEP 201 250 bmy_01987T0/1-279 SHEEWNQMQS QEDEVAITEQ DLELIKERET AIRQLEADIL DVNQIFKDLA ENSP00000363054/1-276 -HEEWNQMQS QEDEVAITEQ DLELIKERET AIRQLEADIL DVNQIFKDLA ENSBTAP00000001580/1-274 -HEEWNQMQR QEDEVAITEQ DLELIKERET AIRQLEADIL DVNQIFKDLA ENSTTRP00000004600/1-296 CHEEWNQMQS QEDEVAITEQ DLELIKERET AIRQLEADIL DVNQIFKDLA 251 300 bmy_01987T0/1-279 MMIHDQGDLI DSIEANVESS EVHVERATDQ LQRAAYYQKK SRKKICILVL ENSP00000363054/1-276 MMIHDQGDLI DSIEANVESS EVHVERATEQ LQRAAYYQKK SRKKMCILVL ENSBTAP00000001580/1-274 MMIHDQGDLI DSIEANVESS EVHVERATDQ LQRAAYYQKK SRKKICILVL ENSTTRP00000004600/1-296 MMIHDQGDLI DSIEANVESS EVHVERATDQ LQRAAYYQKK SRKKICILVL 301 350 bmy_01987T0/1-279 VLSVIIVILG LILWLVNK-- ENSP00000363054/1-276 VLSVIILILG LIIWLVYKTK ENSBTAP00000001580/1-274 VLSVIIVIFG FILWLVNK-- ENSTTRP00000004600/1-296 VLSVIIVILG LILWLVNKK-