KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:14:55 2014 Check: 00 .. Name: ENSTTRP00000003562/1-602 Len: 606 Check: 6429 Weight: 1.00 Name: ENSBTAP00000001581/1-604 Len: 606 Check: 3135 Weight: 1.00 Name: bmy_15195T0/1-420 Len: 606 Check: 6165 Weight: 1.00 Name: BACU003549/1-530 Len: 606 Check: 2948 Weight: 1.00 // 1 50 ENSTTRP00000003562/1-602 MEAEPPLYPV AGAVGAQGDE DQLGVPDGPE APLDELVGAY PNYNEQEEER ENSBTAP00000001581/1-604 MEAEPPLYPV AGAAGPQGDE DRLGVPDGPE APLDELVGAY PNYNEEEEER bmy_15195T0/1-420 MEAEPPLYPV AGAAGAQGDE DQLGVPDGPE APLDELVGAY PNYNEEEEER BACU003549/1-530 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000003562/1-602 RYYRRKRLGV LKNVLAASAG GMLTYGVYLG LLQMQLILHY DETYREVKYG ENSBTAP00000001581/1-604 RYYRRKRLGV LKNVLAASAG GMLTYGVYLG LLQMQLILHY DETYREVKYG bmy_15195T0/1-420 RYYRRKRLGV LKNVLAASAG GMLTYGVYLG LLQMQLILHY DETYREVKYG BACU003549/1-530 ---------- ---------- -MLTYGVYLG LLQMQLILHY DETYREVKYG 101 150 ENSTTRP00000003562/1-602 NMGLPDIDSK MLMGINVTPI VALLYTPVLI RFFGTKWMMF LAVGIYALFV ENSBTAP00000001581/1-604 NMGLPDIDSK MLMGINVTPI AALLYTPVLI RFFGTKWMMF LAVGIYALFV bmy_15195T0/1-420 NMGLPDIDSK MLMGINVTPI VALLYTPVLI ---------- ---------- BACU003549/1-530 NMGLPDIDSK MLMGINVTPI VALLYTPVLI RFFGTKWMMF LAVGIYALFV 151 200 ENSTTRP00000003562/1-602 STNYWERYYT LVPSAVALGM AIVPLWASMG NYITRMAQKY YEYSHYKEQD ENSBTAP00000001581/1-604 STNYWERYYT LVPSAVALGM AIVPLWASMG NYITRMAQ-Y YEYSHYKEQD bmy_15195T0/1-420 ---------- ---------- ---------- ----RMAQKY YEYSHYKEQD BACU003549/1-530 STNYWERYYT LVPSAVVLGM AIVPLWASMG NYITRMAQKY YEYSHYKEQD 201 250 ENSTTRP00000003562/1-602 EQGPQQRPPR GSHAPYLLVF QAIFYSFFHL SFACAQLPMI YFLNHYLYDL ENSBTAP00000001581/1-604 EQGPQQRPPR GSHAPYLLVF QAIFYSFFHL SFACAQLPMI YFLNHYLYDL bmy_15195T0/1-420 EQGPQQRPPR GSHAPYLLVF QAIFYSFFHL SFACAQLPMI YFLNHYLYDL BACU003549/1-530 EQGPQQRPPR GSHAPYLLVF QAIFYGFFHL SFACAQLPMI YFLNHYLYDL 251 300 ENSTTRP00000003562/1-602 NHTLYKVQNC GTNSQGILTG FNKTVLRTLP RSRNLIVVES VLMAVAFLAM ENSBTAP00000001581/1-604 NHTLFNVQNC GTNSQGILLG FNKTVLRTLP RSRNLIVVES VLMAVAFLAM bmy_15195T0/1-420 NHTLYNVQNC GTNSQGILVG FNKTVLRTLP RSRNLIVVES VLMAVAFLAM BACU003549/1-530 NHTLYNVQNC GTNSQGILIG FNKTVLRTLP RSRNLIVVES VLMAVAFLAM 301 350 ENSTTRP00000003562/1-602 LLXMLGLCGA AYRPTEEIDL RSVGWGNIFQ LPFKHVRDFR LRHLVPFFIY ENSBTAP00000001581/1-604 LL-VLGLCGA AYRPTEEIDL RSVGWGNIFQ LPFKHVRDFR LRHLVPFFIY bmy_15195T0/1-420 LL-VLGLCGA AYRPTEEIDL RSVGWGNIFQ LPFKHVRDFR LRH------- BACU003549/1-530 LL-VLGLCGA AYRPTEEIDL RSVGWGNIFQ LPFKHVRDFR LRHLVPFFIY 351 400 ENSTTRP00000003562/1-602 SGFEVLFACT GLALGYGVCS VGLERLAYVL VAYSLGASAA SALGLLGLWL ENSBTAP00000001581/1-604 SGFEVLFACT GLALGYGVCS VGLERLAYLL VAYSLGASAS SALGLLGLWL bmy_15195T0/1-420 ---------- ---LGYGVCS VGLEHLAHLL VAYSLGASAS SVLGLLGLWL BACU003549/1-530 SGFEVLFACT GLALGYGVCS VGLEHLAYLL VAYSLGASAS SALGLLGLWL 401 450 ENSTTRP00000003562/1-602 PRPAPLVAGA GLHLLLTVSL FFWAPAPRVL QHIGVLYAVA VLWGVGSALN ENSBTAP00000001581/1-604 PRPVPLVAGA GLHLLLTLSL FFWAPKPRTL QHIWILYTVA VLWGVGSALN bmy_15195T0/1-420 PRPVPLVAGA GLHLLLTLGL FFWAPTPRVL QHIWILYAAA VLWGVGSALN BACU003549/1-530 PRPVPLVAGA GLHLLLTLSL FFWAPAPRVL QHIWILYAAA VLWGVGSALN 451 500 ENSTTRP00000003562/1-602 KTGLSTLLGI LYEDKERQDF IFTIYHWWQA IAVFAVYLGS SLPMKAKLTV ENSBTAP00000001581/1-604 KTGISTLLGI LYEDKERQDF IFTIYHWWQA VAIFTVYLGS SLPMKAKLTV bmy_15195T0/1-420 KTGLSTLLGI LYEDKERQDF IFTIYHWWQA MAIFTVYLGS SLPMK----- BACU003549/1-530 KTGLSTLLGI LYEDKERQDF IFTIYHWWQA MAIFTVYLGS SLPMKAKLTV 501 550 ENSTTRP00000003562/1-602 LLVTLVAAAA SYLWMEQKLR RGVVPRQPRI PRPQHKVRGY RYLEEDNSDE ENSBTAP00000001581/1-604 LLVTLVASAA SYLWMEQKLR RGVVPRQPRI PRPQHKVRGY RYLEEDNSDE bmy_15195T0/1-420 ---------- ---------- ---------- ---------- ---------- BACU003549/1-530 LLVTLVAAAA SYLWMEQKLR RGVVPRQPRI PRPQHKVRGY RYLEEDNSDE 551 600 ENSTTRP00000003562/1-602 SDTEGEC--- -GGGRGDCAE EEAGPVGSEP GPKPAGLCRR PCPYEQALGG ENSBTAP00000001581/1-604 SEAEGERSGC GGGGRGDCAE EEVPPAWPRP GPEPAILYRR PCPYEQAQGG bmy_15195T0/1-420 ---------- ---------- ---------- ---------- ---------- BACU003549/1-530 SDAEGER--- -GGGRGYCAE EEAPPAGPGP GPKPAGLCRR PCPYEQALGG 601 650 ENSTTRP00000003562/1-602 DGPEEQ ENSBTAP00000001581/1-604 DGPEEQ bmy_15195T0/1-420 ------ BACU003549/1-530 DGPEEQ