KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:14:56 2014 Check: 00 .. Name: ENSTTRP00000008559/1-323 Len: 541 Check: 7825 Weight: 1.00 Name: ENSP00000357022/1-335 Len: 541 Check: 8011 Weight: 1.00 Name: ENSBTAP00000001585/1-336 Len: 541 Check: 1044 Weight: 1.00 Name: bmy_06324T0/1-297 Len: 541 Check: 2861 Weight: 1.00 Name: BACU003868/1-540 Len: 541 Check: 5602 Weight: 1.00 // 1 50 ENSTTRP00000008559/1-323 ---------- ---------- ---------- ---------- ---------- ENSP00000357022/1-335 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001585/1-336 ---------- ---------- ---------- ---------- ---------- bmy_06324T0/1-297 ---------- ---------- ---------- ---------- ---------- BACU003868/1-540 MFNIRNIGKT LVTRTQGRKI ASDGLKGHIF EVSFADLQND EVAFRKFMLI 51 100 ENSTTRP00000008559/1-323 --MLSSTACF TFIFLL---- ---------C QL-------- ---------- ENSP00000357022/1-335 --MAGSPTCL TLIYIL---- ---------W QL-------- ---------- ENSBTAP00000001585/1-336 --MLGAPACF --IFLL---- ---------C QL-------- ---------- bmy_06324T0/1-297 ---------- ---------- ---------- ---------- ---------- BACU003868/1-540 TEDVQDKNCL TNFHAMDLTH DKMCSMVKKW QTMIEAHIDV KTTYGYLLRL 101 150 ENSTTRP00000008559/1-323 ---------- ---------- ---------- ---------- ------TGPA ENSP00000357022/1-335 ---------- ---------- ---------- ---------- ------TGSA ENSBTAP00000001585/1-336 ---------- ---------- ---------- ---------- ------TGPA bmy_06324T0/1-297 ---------- ---------- ---------- ---------- --------PA BACU003868/1-540 FCMGFTKKHN NQIRKTSYAQ YQKVLLQIRK KMMKIMTQEV QTIDLKEGPA 151 200 ENSTTRP00000008559/1-323 ACGVLKKLVG ALGGSVNFPL NLSADPIDSI IWVFNTTTLV TIQPKLADKK ENSP00000357022/1-335 ASGPVKELVG SVGGAVTFPL KSKVKQVDSI VWTFNTTPLV TIQP----EG ENSBTAP00000001585/1-336 ASGIPKKLVG AIGGSVIFPL NLSVNLVDSI IWVFNSTTLV TIQPKTAGKK bmy_06324T0/1-297 ASGVLKKLVG ALGGSVTFPL NLSVDPIDSI IWVFNTTTLI TIQPKLADKK BACU003868/1-540 ASGVLKKLVG ALGGSVTFPL NLSVDPIDSI IWVFNTTTLV TIQPKLADKK 201 250 ENSTTRP00000008559/1-323 ALIIVTQHRN KERVNFPHEG YSLKLSKLKK NDSGVYRVEI HSSTLQDPLT ENSP00000357022/1-335 GTIIVTQNRN RERVDFPDGG YSLKLSKLKK NDSGIYYVGI YSSSLQQPST ENSBTAP00000001585/1-336 ALVIVTQKRN LERVNFPHEG YSLKLSRLKK NDSGIYRVEI HSSTLQDPLT bmy_06324T0/1-297 ALIIVTQHRN KERVNFPHEG YSLRLSKLKK NDSGV----- ---------- BACU003868/1-540 AVIIVTQHRN KERVNFPHEG YSLRLSKLKK NDSGVYRVEI HSSTLQDPLT 251 300 ENSTTRP00000008559/1-323 QEYELRVYXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000357022/1-335 QEYVLHVYEH LSKPKVTMGL QSNKNGTCVT NLTCCMEHGE EDVIYTWKAL ENSBTAP00000001585/1-336 QEYELHVYEY LSKPKVVIGL QENKNGTCVT NLTCSMEHGE EDVTYSWKSL bmy_06324T0/1-297 -------YQH LSKPKVIIGL QNNKNGTCVT NLTCSMEQGG EDVTYSWKSL BACU003868/1-540 QEYELRVYEH LSKPKVIIGL QNNKNGTCVT NLTCSMEQGG EDVTYSWKSL 301 350 ENSTTRP00000008559/1-323 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXX------ ENSP00000357022/1-335 GQAANESHNG SILPISWRWG ESDMTFICVA RNPVSRNFSS PILARKLCEG ENSBTAP00000001585/1-336 DQTTNESHRG SILPISWRWE KSDMTFICMA SNPISSNSSN PIFAQNLCEG bmy_06324T0/1-297 GQATNESHSG SILPISWRQE KRDMTFICMA RNPISSNSSN PIFAWKLCEG BACU003868/1-540 GQATNESHSG SILPISWRQE KRDMTFICMA RNPISSNSSN PIFAWNLCEG 351 400 ENSTTRP00000008559/1-323 ---------X XXXXXVTPLL -CFHAPVLII LIIRRERRKE SIEEKKGLNL ENSP00000357022/1-335 AADDPDSSMV LLCLLLVPLL LSLFVLGLFL WFLKRERQEE YIEEKKRVDI ENSBTAP00000001585/1-336 AAGGQAPY-V VLYVLLSFFL LCSLALVLII FIIQRERKKE IIEEKKELDT bmy_06324T0/1-297 AAGGLATS-V ILKLLLSLIL LCFIALVLII LIIRRERRKE SIEEKKGLNL BACU003868/1-540 AAGGLATS-V ILKLLLSLIL LCFIALVLII LIIRRERRKE FIEEKKGLNL 401 450 ENSTTRP00000008559/1-323 HPETLNYSPT FGEASEYDTI SYLNSIVP-- ------EENA VNTLYSTVQI ENSP00000357022/1-335 CRETPNICPH SGENTEYDTI PHTNRTIL-- ------KEDP ANTVYSTVEI ENSBTAP00000001585/1-336 HQKTLPFPPI PEEMPEYDTI STFNGTIP-- ------EENP ANTIYSTVHI bmy_06324T0/1-297 HPETLNYSPA FEETSEYDTI SYFNSTIP-- ------EENA VNTLYSTVKI BACU003868/1-540 HPETLNYSPA FEETSEYDTI SYFNELVAPG ASGSDLASNV HTVIYGITPS 451 500 ENSTTRP00000008559/1-323 LPKVE----- ---------- -------KSH SLPTLPDTPR -------KFT ENSP00000357022/1-335 PKKME----- ---------- -------NPH SLLTMPDTPR -------LFA ENSBTAP00000001585/1-336 APKVT----- ---------- -------EPY SLPMLSDTPT -------ASI bmy_06324T0/1-297 PPKVE----- ---------- -------KSH SLPTLPDTPR -------QFT BACU003868/1-540 PPLFKMATQQ TQFLLHRMAE HYTRGKCSKY TLFHCENTPK DVLSVLLKLT 501 550 ENSTTRP00000008559/1-323 HENVN----- ---------- ---------- ---------- - ENSP00000357022/1-335 YENVI----- ---------- ---------- ---------- - ENSBTAP00000001585/1-336 YNNVM----- ---------- ---------- ---------- - bmy_06324T0/1-297 HENVI----- ---------- ---------- ---------- - BACU003868/1-540 LHELLPWAVA AGLTTDSQHP GGSGVDPQDL GVKAHKDREA K