KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:14:57 2014 Check: 00 .. Name: ENSP00000364526/1-1359 Len: 1380 Check: 6594 Weight: 1.00 Name: ENSBTAP00000001595/1-1304 Len: 1380 Check: 759 Weight: 1.00 Name: bmy_13215T0/1-1125 Len: 1380 Check: 8046 Weight: 1.00 Name: ENSTTRP00000015790/1-1265 Len: 1380 Check: 7237 Weight: 1.00 // 1 50 ENSP00000364526/1-1359 MYSVEDLLIS HGYKLSRDPP ASREDNPKGR QAARTGTRAG QGLQNGHEDG ENSBTAP00000001595/1-1304 MYSVEDLLIS HGYKLSRKLP APHEDDGERR QPARTTVPAG PGLLNGCDDG bmy_13215T0/1-1125 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015790/1-1265 MYSVEDLLIS HGYKLSRDLP APRKDDGEGR QPVKPRAPAG PGLLNGCDDG 51 100 ENSP00000364526/1-1359 PAALAHRKTS AGKGHVSDSE SRRSTPRGHG EPQSTSA-SR TSEAGFCNQP ENSBTAP00000001595/1-1304 PAALPRGKAS PGTGLLSDPE SRRLGPRGHG ERPSTAAAAR ISEAGFYHQP bmy_13215T0/1-1125 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015790/1-1265 PAASPRGQAS LGTGRLSEPD SRGRGPRGLG EPPSAAAPAR ISEAGLRQQP 101 150 ENSP00000364526/1-1359 PSAWSSHPPT GNDQAYRRRG RQEARSQKPR EHENLEARGM AQAHSLPVHV ENSBTAP00000001595/1-1304 VLAWSSQ-PT GRSHAYWRRR EQEARE---- -----DPGGR GPVPSLPTHP bmy_13215T0/1-1125 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015790/1-1265 --------PA SRSHTY-RRR EQEARE---- -----EP--- ARAPSPPAQA 151 200 ENSP00000364526/1-1359 REGPWEVGGR SEHVMKKPVW EEELRMSGPA KWQNVSLESW NQPRKLGRQM ENSBTAP00000001595/1-1304 REGPWEVGGR SEHVMKKAVW EDELGMAGPA RWQDVSVRSW NQPPRLGRQM bmy_13215T0/1-1125 ---------- ---------- ---------- ---------- ---------M ENSTTRP00000015790/1-1265 TQGPREAGGR SEDVMRKALC EEGLGLAGPA RWQSVRVGGQ AQPRNPGGQM 201 250 ENSP00000364526/1-1359 SDGDGERLFQ DLYPFIQGEH VLNSQNKGKS RSLPRVLSPE SLSCTEIPIP ENSBTAP00000001595/1-1304 SDGVGEKLFQ DLYPFMLGEH GLTSQSKGKS QSLPRVLSPE SLSCMEVPIP bmy_13215T0/1-1125 PAGVGEKLFQ DLHPCVLGGH GLTSQSPGKS QSLPRVLSPE DLSCVEIPIP ENSTTRP00000015790/1-1265 PAGVGEKLFQ DLYPCVLGGH GLTSE---KS HSLPRVLSPE SLSCVEIPIP 251 300 ENSP00000364526/1-1359 LNERHSPKMP --PY-PPTCA PNLDSTRNSE KSGCSAPFPR PKFGRPLKPP ENSBTAP00000001595/1-1304 LSDGHLPGVP KVPLQPPNCA SNLESTRNPK KAGTSAPLPQ PRFGRPLKPP bmy_13215T0/1-1125 LSDGHFPGVP QVPFQPPNGA RDSESTRNPE KGGSSAPLPR PRFGRPLKPP ENSTTRP00000015790/1-1265 LSDGHFPGVP QVAFQPSFGA RDSEATRNPE KGGSSAPLPR PRFGRPLKPP 301 350 ENSP00000364526/1-1359 SYSSHQQSRG GADSSDSQDS QQMDA----- ----YVPRHE LCLSDPGLEP ENSBTAP00000001595/1-1304 SYGSQPHSKA GAENGSYTDS RQLDPGAAHS ART-NSARQD LYGPDPGLEP bmy_13215T0/1-1125 SYGSHQHCRA GAENGSYADS RQPDSAAAPS AKANDAARQE PCAPDPGLEP ENSTTRP00000015790/1-1265 SYGSHQHCRA GGENGSYADS RQPDSAAA-- ----HAARQE PCAPDPGLEP 351 400 ENSP00000364526/1-1359 PVYVPPPSYR SPPQNIPNPY LEDTVP-INV CGGHSQQQSP TEKAGASGQP ENSBTAP00000001595/1-1304 PVYVPPPSYK SPPQPAAHPC PEEAVS-RHE GRGRRVPQHP MERPAAGGQP bmy_13215T0/1-1125 PVYVPPPSYR -PLQAAAPAC PGEARGRRHE GGGRRAQRHP VEKAAADGQP ENSTTRP00000015790/1-1265 PVYVPPPSYR SPLQAAAPAC PGEARGRRPE GGGRHTQRQP VEKAAAGGQP 401 450 ENSP00000364526/1-1359 PSGPPGTGNE YGVSPRLPQG LPAHPRPVTA YDGFVQYIPF DDPRLRHFKL ENSBTAP00000001595/1-1304 LSGSRGAGSE WGASPCSPVG VPPQPHHTTA YDGSILIIPF DDPRIRHIKL bmy_13215T0/1-1125 PWGPRGAGEE RGPGPCSPVG VLPQPRPATA CDGSVLYIPF DDPRIRHIRL ENSTTRP00000015790/1-1265 PSGPRGAEEE LGPSPCSPVG VLPQPRPATA CDGSVLYIPF DDPRIRHIRL 451 500 ENSP00000364526/1-1359 AQPQGFCEDI KLDDKSYNSS PVTAQEPAHG GMQPDGAIWN PQSLIPPSGD ENSBTAP00000001595/1-1304 PRPHGFWEDV KLD------G AVPAPDPR-- SLQQEGAVWG ------PSGK bmy_13215T0/1-1125 ARPHGFWEDV KLD------G PVPAPEPAPG SLQREAAVRG ------PSGS ENSTTRP00000015790/1-1265 ARPHGFWEDV KLD------G LVPATEPAPG SLQRGAVVRG ------PSGS 501 550 ENSP00000364526/1-1359 ERGLVLADSS PRWLWGQPPG DGENSGLPNQ RDRCV-ARGQ WPDVRGSQHG ENSBTAP00000001595/1-1304 ERGPAPADPS PSWLWGQPPR NGENGSSPDQ RDPCIVTQRK QPDVSGSPQE bmy_13215T0/1-1125 ESRPTPADPS APWLWDRLPR GGEDGGFADQ RDACVVTRSQ RPDVR----- ENSTTRP00000015790/1-1265 ES-------- --WLWDRLPG GGEDGGFAEH RDACVFTRSQ RPDVQ----- 551 600 ENSP00000364526/1-1359 HTGRQVSSPY SQGESTCETQ TKLKKFQTGT RTKKSSKKKM NETIFCLVSI ENSBTAP00000001595/1-1304 YPESLVSSPS PQGESSCEMQ TQLRKFEAGL QPKRSSKKKT SETIFCLVSI bmy_13215T0/1-1125 -EESLISSPS PQGEGTCETQ TQLRKFEAGL QTKKSSKKKM SETIFCLVSI ENSTTRP00000015790/1-1265 -AESLVSSPS PQGESTCEIQ TQLRKFEAGL QTKKSSKKKM SETIFCLVSI 601 650 ENSP00000364526/1-1359 PVKSESHLPD RDMDNNDLKP SADQKNGSDK SPALQEQSLL SMSSTDLELQ ENSBTAP00000001595/1-1304 PVKSESQLPG TDTNNNDLKQ ---------- SASLQEQSVL SLSSTDLELQ bmy_13215T0/1-1125 PVKSESHLPA TDTNNNDLKQ GADKRPGPEK SAALPEQSLL SLSSTDLELQ ENSTTRP00000015790/1-1265 PVKSESHLPA TDTNNNDLKQ NVDERPGPEK SAALREQSLL SLSSTDLELQ 651 700 ENSP00000364526/1-1359 ALTGSMGGRT EFQKQDLGEP EEDRQTNDLS FIHLTKHREL KHSGSWPGHR ENSBTAP00000001595/1-1304 ALTGSMATRT ELPRPDPGGP GRGRQADDLR FPSPAKHRAL AWPGPWPGHH bmy_13215T0/1-1125 ALTGGMTGRT ELQEPDPGGP GGDQPTDGPR FPQPVKHRAL ACPGSWPGQQ ENSTTRP00000015790/1-1265 ALMGGMTGRT ELQKSDPGSP GGDQPTDDPR FPHPVKHRAL ACPGSWPGQQ 701 750 ENSP00000364526/1-1359 YRDQQTQTSF SEEPQSSQLL PGAKLGGPSR AALSPKCSDP AASEAQTHTA ENSBTAP00000001595/1-1304 FRDQQTQTSF AHEPQSLQPL PGERPGGSPD PVLPPRCLDP APFEVQMHMA bmy_13215T0/1-1125 YRDQQTQTGF AQESQSPRPL AGEMRGGSPD AALPPRCLD- -AFGVQMHVA ENSTTRP00000015790/1-1265 YRDQQTQTSF TQESQSPRPL PGEMWGGSPD TALPPRCLD- -AFEVQMHVA 751 800 ENSP00000364526/1-1359 FPTGDHKQRP SARNLKGH-R SLSPSSNSAF SRTSLSVDQA PTPKAGRSQP ENSBTAP00000001595/1-1304 LASSDPNQRP GAHSPKSQ-G SLSPSSNSAF SGSSWPRNQG PVPRASLGQQ bmy_13215T0/1-1125 LASSDQSQRP GAPSPKGQGG PLSPCSGSAF SGSSSSRNQA PSP----GEP ENSTTRP00000015790/1-1265 LASSDQNQRP GAPSPKGQGG PLSPCGGGTI SGSSSPRSQA PAPRAGPGEP 801 850 ENSP00000364526/1-1359 CVDVHGLGAH PGPKREVVKG EPTGPCNSKQ LFGQFLLKPV SRRPWDLISQ ENSBTAP00000001595/1-1304 GSDGPGRRAS PVSRGEVIKG ETTGPCNSRQ LFGQFLLKPV SRRPWDLISQ bmy_13215T0/1-1125 RMDGRGRGGS PVPRAEVVKG ATTGPCNSRQ PFGQFLLKPV SRRPWDLISQ ENSTTRP00000015790/1-1265 RVDGRVRGGS PVPRAEVVKG ATTGPCNSRQ PFGQFLLKPV SRRPWDLISQ 851 900 ENSP00000364526/1-1359 LESFNKELQE EEESSSSSSS SSSSSEESEA EPQQENRAHC RQEDVGFRGN ENSBTAP00000001595/1-1304 LESFNKELQ- EEEGSSGSSS DGSGSEDSDT ELPWGSCARP APQLPGL--- bmy_13215T0/1-1125 LESFNKELQ- EEEGSRDGGG GGSSSEDSET EPPWGGRAQP APERPGL--- ENSTTRP00000015790/1-1265 LESFNKELQ- EEEGGRDG-- -GSGREDSET EPPWGGRSQP VSTRPGL--- 901 950 ENSP00000364526/1-1359 SPEMRVEPQP RMWVPESPVC RSGRGESKSE SWSEELQPGH PRAWPPSPGR ENSBTAP00000001595/1-1304 ---------L KDIVPEDPRT RPGRVKSKSE SWSEEGRPRS PRPWQA---- bmy_13215T0/1-1125 ---------P ESRAPEDPGP RPGSVKGKPE RWGEGARPRS PGPRQA---- ENSTTRP00000015790/1-1265 ---------P G--APEDPGP RPGSVKGKPE SWAEEARP-P PGPGA----- 951 1000 ENSP00000364526/1-1359 FRVEEGGGAP FC-SADGSTS AEKRHLEVSN GMDELAGSPF PVTR-MSSRS ENSBTAP00000001595/1-1304 ----EGRGSV WL-SPPGSWI AEDGDREVED RVAQLAVSPR PVKRAISSGL bmy_13215T0/1-1125 ----EGSGRT AGPSSPGSWM AEEGDREVEA GVPEPAVSPR PARRAASSGP ENSTTRP00000015790/1-1265 ----DGSGAP QG-SPPGSRM AEGRDREVEA GAPEPAVSPR PVRRAASSGP 1001 1050 ENSP00000364526/1-1359 SDAKPLPASY PAEPREPQES PKITSAFSSV KPSEAVPRKF DSGGERGAGL ENSBTAP00000001595/1-1304 NDAKPEPPPD PAEQREPLPS QELPGSRGAV ELSAAGPPRA GGGEQGSTRA bmy_13215T0/1-1125 SNAGAGPPRD PVEPRVPPPS RGLHGRLGAA ELSAASAPKA GGGEQAATGA ENSTTRP00000015790/1-1265 SDAAAGPPPD AAEPRAPPPS REL----SAA ELSAASAPKA GGGGRGTTGA 1051 1100 ENSP00000364526/1-1359 PLSLSNKNRG LSAPDLRSVG LTPGQEQGAS ELEGSLGEAS TIEIPPGESL ENSBTAP00000001595/1-1304 PLSLAGKSRG LSAPDLRSVG LTLVQEHSTS QLAGSPGDAN AIEIPPNESL bmy_13215T0/1-1125 PLSLAGKPRG LSAPDLRSVG LTPGQEQSAG QLAGSPGETS AVEIPPNESL ENSTTRP00000015790/1-1265 PLSVAGKPRG LSAPDLRSVG LTPGQEQSAG QLAGSPGEVS AVEIPPNESL 1101 1150 ENSP00000364526/1-1359 QARAARILGI EVAVESLLPG IRRAGQNQPA EPDASACTPE SPQEELLSRP ENSBTAP00000001595/1-1304 EARAARILGI EVAVESLLPG AQRAGQRRHP EPDGSALRPE SPRQEAAASL bmy_13215T0/1-1125 QARAARILGI EVAVESLLPG ARRTGQSQDP EPDGGARRLE APRQEAAAGP ENSTTRP00000015790/1-1265 QARAARILGI EVAVESLLPG ARRTGRSQDP EPEGGARGLE ARRRDAAAGP 1151 1200 ENSP00000364526/1-1359 APADVPRVST DAFYGRRKCG WTKSPLFVGD RDSARRAPQA FEHSDVDGVV ENSBTAP00000001595/1-1304 AQPNESTAPA DAFYGRRKCG WTKSPLFVGE RDSTRQVPRA SEPADVDGAV bmy_13215T0/1-1125 AQRCDPAASA DAFYSRRRCG WTESPLFVGE GASARQAPRA SEPAGVDGAV ENSTTRP00000015790/1-1265 -PAGDPAASA DAFYSRRRCG WTESPLFVGE VGSARQAPQA SEPAGVDGAV 1201 1250 ENSP00000364526/1-1359 TSTDPVPEPE PSPLESKFFE QKDVETKPPF RSTLFHFVER TPSVAGSEKR ENSBTAP00000001595/1-1304 PTK--APETP PSPLESQPFL PKDVETKPPF RSTLFHFIER TPNLAFSEKK bmy_13215T0/1-1125 PSK--APEPQ PRPQECQPFH PKDVETKPPF RSTLFHFIER TPNLAASEKR ENSTTRP00000015790/1-1265 PSK--APEPP PSPQECRPFH PKDVGTKPPF RSTLFHFIER TPNLTASEKR 1251 1300 ENSP00000364526/1-1359 LRSPSKVIES LQEKLASPPR RADPDRLMRM KEVSSVSRMR VLSFRNADSQ ENSBTAP00000001595/1-1304 LRNTSRVIES LQEKLVSPPR KADPDRLTRM KEVSSVSRMR LLTSRAADS- bmy_13215T0/1-1125 LRSTSKVIES LQEKLASPPR RADPDRLMRM KEVSSVSRLR LLTSRGVDCV ENSTTRP00000015790/1-1265 LRSTSKVIES LQEKLASPPR RADPDR-MRM KEVSSVSRLR LLTSRGADSA 1301 1350 ENSP00000364526/1-1359 EDAEELKATT RGQAGLPGGL VSPGSGDRAQ RLGHSLSVSK DSISREEKEH ENSBTAP00000001595/1-1304 --AEEPKA-E RGPGAWLGGL VAPSA----- --GHKLSDPQ GALSLEADGH bmy_13215T0/1-1125 EEAEEPKA-E RGPGARPGGP GALSA----- --RHKLSDPR GALPLEEDGH ENSTTRP00000015790/1-1265 EEAEDLKA-E RGPGALSA-- ---------- --RHKLSDPK GAPALEEDGH 1351 1400 ENSP00000364526/1-1359 PAAQKEKSMD QDFWCP-DSY DPSRVERV-- ENSBTAP00000001595/1-1304 PAARRE-NGG RDFWCP-DSY DPSRVERV-- bmy_13215T0/1-1125 PTAXREENGG QDFWCPGEDR AGGRARSVFI ENSTTRP00000015790/1-1265 PTAQREENGA QDFWCP-DSY DPSRVERV--