KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 16:14:57 2014  Check: 00 ..

 Name: ENSP00000370253/1-234     Len:    249  Check:  445  Weight:  1.00
 Name: ENSBTAP00000001615/1-243  Len:    249  Check:  3593  Weight:  1.00
 Name: bmy_00919T0/1-243         Len:    249  Check:  8461  Weight:  1.00
 Name: ENSTTRP00000011699/1-138  Len:    249  Check:  9458  Weight:  1.00

//


                          1                                                   50
ENSP00000370253/1-234     MLRVPEPRPG EAKAEG---- AAPPTPSKPL TSFLIQDILR DGAQRQGGRT 
ENSBTAP00000001615/1-243  MLRTPEPQLG NAGAAGCSPP AVPPTQTKPL TSFLIQDILR DGADRRGGHA 
bmy_00919T0/1-243         MLRTPEPRPG EGGAASCSPR AAPPTQSKPL TSFLIQDILR EGADRRGGHA 
ENSTTRP00000011699/1-138  ---------- ---------- ---------- ---------- ---------- 


                          51                                                 100
ENSP00000370253/1-234     SS-------- ---QRQRDPE PEPEPEPEGG RSRAGAQNDQ LSTGPRAAPE 
ENSBTAP00000001615/1-243  GSPQ------ PQPSRQQYPR RDPKPEPEGR RGCARAPEDQ QSDQPRAGSE 
bmy_00919T0/1-243         GSPQPPPQPP PQPPRQPDRR RDPEPEPEGG RGGAGAPEDQ PRARPRAARG 
ENSTTRP00000011699/1-138  ---------- ---------- ---------- ---------- ---------- 


                          101                                                150
ENSP00000370253/1-234     EAETLAETEP ERHLGSYLLD SENTSGALPR LPQTPKQPQK RSRAAFSHTQ 
ENSBTAP00000001615/1-243  EAEKPVETEP GRHLETYLLD CENPPSALQS LPPATKQPQK RSRAAFSHTQ 
bmy_00919T0/1-243         EAEQPAETEP DRHFEAYLLD ------ALPS LPPAPKQPQK RSRAAFSHTQ 
ENSTTRP00000011699/1-138  ---------- -RHFETYLLD WENTRDASPS LPPAPKQPQK RSRVAFSHNQ 


                          151                                                200
ENSP00000370253/1-234     VIELERKFSH QKYLSAPERA HLAKNLKLTE TQVKIWFQNR RYKTKRKQLS 
ENSBTAP00000001615/1-243  VIELERKFSH QKYLSAPERA HLAKNLKLTE TQVKIWFQNR RYKTKRKQLT 
bmy_00919T0/1-243         VIELERKFSH QKYLSAPERA HLAKNLKLTE TQVKIWFQNR RYKTKRKQLT 
ENSTTRP00000011699/1-138  VVELERKFSH QKYLSAPERA HLAKNLKLTE TQVKIWFQNR RYKTKRKQLT 


                          201                                                250
ENSP00000370253/1-234     SELGDLEKHS SLPALKEEAF SRASLVSVYN SYPYYPYLYC VGSWSPAFW 
ENSBTAP00000001615/1-243  SDLGNLEKHS SLPALKEEGF SQGSLISVHN TYPYYPYVYC LGGWSPAFW 
bmy_00919T0/1-243         SDLGDLEKHP SLPALKEEGF SRGSLISMHN TCPYYPYLYC LAGWSPAFW 
ENSTTRP00000011699/1-138  SDLGDLEKHP SLPALKEEGF SRGSLISMHN AYPYYPYLYC LAGWSPAFW