KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:14:57 2014 Check: 00 .. Name: ENSP00000369431/1-361 Len: 382 Check: 9972 Weight: 1.00 Name: ENSBTAP00000001617/1-362 Len: 382 Check: 4723 Weight: 1.00 Name: bmy_10153T0/1-241 Len: 382 Check: 6083 Weight: 1.00 Name: ENSTTRP00000005017/1-363 Len: 382 Check: 3837 Weight: 1.00 // 1 50 ENSP00000369431/1-361 MTGKKSSREK RRKRSSQEAA AA--LAAPDI VPALASGSSG STSGCGSAGG ENSBTAP00000001617/1-362 MTGKKSSREK RRKRSGQEAA AA--LAAPDL VPAVGGSGSG STSGCGSASG bmy_10153T0/1-241 MTGKKSSREK RRKRSGQEAA AA--LAAPDP VPAVASGGSG STSGCGSASG ENSTTRP00000005017/1-363 MTGKKSSREK RRKRSGQEAA AAAALAAPDP VPAVASGGSG STSGCGSASG 51 100 ENSP00000369431/1-361 CGSVSCCGNA NFSGSVTGGG SGGSCWGGSS VERSERRKRR STDSS-SVSG ENSBTAP00000001617/1-362 CGSVTCCGNT SVSGSVTGGG SGGSCWGGSS VERGERRKRR STDSSSSVSG bmy_10153T0/1-241 CGSVTCCGNT SLSGSVTGGG SGGSCWGGSS VERSERRKRR STDSSASVSG ENSTTRP00000005017/1-363 CGSVTCCGNT SLSGSVTGGG SCGSCWGGGS VERNERRKRR STDSSASVSG 101 150 ENSP00000369431/1-361 SLQQ------ ---------- --ETKYILPT LEKELFLAEH SDLEEGGLDL ENSBTAP00000001617/1-362 SLQQ------ ---------- --EAKYLLPP LEKELFLAEH SDLEEGGLDL bmy_10153T0/1-241 SLQQVRACSS RRFSKRLRFR KKEAKYLLPT LEKELFLAEH SDLEEGGLDL ENSTTRP00000005017/1-363 SLQQ------ ---------- --EAKYLLPT LEKELFLAEH SDLEEGGLDL 151 200 ENSP00000369431/1-361 TVSLKPVSFY ISDKKEMLQQ CFCIIGEKKL QKMLPDVLKN CSIEEIKKLC ENSBTAP00000001617/1-362 TVALKPVSFY ISDKKEMLRQ CFCIIGEKKL QKMLPDVLKN CSIEEIKRLC bmy_10153T0/1-241 TVALKPVSFY ISDKKEMLQQ CFCIIGEKKL QKMLPDVLKN CSIEEIKKLC ENSTTRP00000005017/1-363 TVALKPVSFY ISDKKEMLQQ CFCIIGEKKL QKMLPDVLKN CSIEEIKKLC 201 250 ENSP00000369431/1-361 QEQLELLSEK KILKILEGDN GMDSDMEEEA DDGSKMGSDL VSQQDICIDS ENSBTAP00000001617/1-362 QEQLELLSEK KILKILEGDN GMDSEMEEEA DDGSKMVSDV VNQQDSCVDS bmy_10153T0/1-241 QEQLELLSEK KILKILEGDN GMDSDMEEEA DDGSKMGSDL VSQ------- ENSTTRP00000005017/1-363 QEQLELLSEK KILKILEGDS GMDSDVEEEA DDGSKMGSDL VSQQDICIDS 251 300 ENSP00000369431/1-361 ASSVRENKQP EGLELKQGKG EDSDVLSINA DAYDSDIEGP CNEEAAAPEA ENSBTAP00000001617/1-362 TSSLRENKQP EGLELKQGKG EDSDVLSINA DAYDSDIEGP CNEEAAAPEV bmy_10153T0/1-241 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005017/1-363 TSSLRENKQP EGLELKQGKG EDSDVLSINA DAYDSDIEGP CNEEAAA-EV 301 350 ENSP00000369431/1-361 PENTVQSEAG QIDDLEKDIE KSVNEILGLA ESSPNEPKAA TLAVPPPEDV ENSBTAP00000001617/1-362 PENTVQSEAG QIDDLEKDIE KSVNEILGLA ESSPKEPKAA TLTVPPPEDV bmy_10153T0/1-241 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005017/1-363 SENTVQSEAG QIDDLEKDIE KSVNEILGLA ESSPKEPKAA TLTVPPPEDV 351 400 ENSP00000369431/1-361 QPSAQQLELL ELEMRARAIK ALMKAGDIKK PA ENSBTAP00000001617/1-362 QPSAQQLELL ELEMRARAIK ALMKAGDIKK PA bmy_10153T0/1-241 ---------- ---------- ---------- -- ENSTTRP00000005017/1-363 QPSAQQLELL ELEMRARAIK ALMKAGDIKK PA