KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:14:58 2014 Check: 00 .. Name: bmy_04989T0/1-263 Len: 354 Check: 9413 Weight: 1.00 Name: ENSTTRP00000011818/1-223 Len: 354 Check: 63 Weight: 1.00 Name: ENSP00000322020/1-323 Len: 354 Check: 4368 Weight: 1.00 Name: ENSBTAP00000001624/1-322 Len: 354 Check: 3877 Weight: 1.00 // 1 50 bmy_04989T0/1-263 GIPAAGAAPG RWISSARPRA VVSEEKPVRL PAKLINGGIA GLIGVTCVFP ENSTTRP00000011818/1-223 ---------- ---------- ---------- ---------- ---------- ENSP00000322020/1-323 ---------- ---------- --MADKQISL PAKLINGGIA GLIGVTCVFP ENSBTAP00000001624/1-322 ---------- ---------- --MADKQISL PAKLINGGIA GLIGVTCVFP 51 100 bmy_04989T0/1-263 IDLAKTRLQN QQNGQRLYTS MSDCLLKTIR SEGYFGMYRG AAVNLTLVTP ENSTTRP00000011818/1-223 ---------- ---------- ---------- ---------- ---------- ENSP00000322020/1-323 IDLAKTRLQN QQNGQRVYTS MSDCLIKTVR SEGYFGMYRG AAVNLTLVTP ENSBTAP00000001624/1-322 IDLAKTRLQN QQNGQRMYTS MSDCLIKTIR SEGYFGMYRG AAVNLTLVTP 101 150 bmy_04989T0/1-263 EKAIKLAAND FFRY------ ---------- ---------- ---------- ENSTTRP00000011818/1-223 ---------- ---------- QKLTLFKEML AGCGAGTCQV IVTTPMEMLK ENSP00000322020/1-323 EKAIKLAAND FFRHQLSKDG QKLTLLKEML AGCGAGTCQV IVTTPMEMLK ENSBTAP00000001624/1-322 EKAIKLAAND FFRYQLSKDG QQLTLFKEML AGCGAGTCQV IVTTPMEMLK 151 200 bmy_04989T0/1-263 ---------- ---------- QLSKDGGEDP APDAPAWRQR GHLLGVPGLR ENSTTRP00000011818/1-223 IQLQDAGRIA AQRKTLSGQA QLSGRGGAQP PVEPPAAPRP ----TATQLT ENSP00000322020/1-323 IQLQDAGRIA AQRKILAAQG QLSAQGGAQP SVEAPAAPRP ----TATQLT ENSBTAP00000001624/1-322 IQLQDAGRLA AQRKILSAQA QLSGQGSAQP SVEAPATPRP ----TATQLT 201 250 bmy_04989T0/1-263 QEDLAERGPH SLPQG----- --------CL LPR-PGHRPA VRHCSGGLLP ENSTTRP00000011818/1-223 RDLLRSRGIA GLYKGLGATL LXXXXLSIVY FPL-ANLNQL GQPASGEKSP ENSP00000322020/1-323 RDLLRSRGIA GLYKGLGATL LRDVPFSVVY FPLFANLNQL GRPASEEKSP ENSBTAP00000001624/1-322 RDLLRSRGIA GLYKGLGATL LRDVPFSIVY FPLFANLNEL GRPASGEKSP 251 300 bmy_04989T0/1-263 GHRRDPAGAA ASPALSPAAT PCPPAERDQS GARARQPPRM MRESLSPHGL ENSTTRP00000011818/1-223 LYVSFLAGCV AGSAAAVAVN PC-----DVV KTRLQTLQRG VNEDTYSGFL ENSP00000322020/1-323 FYVSFLAGCV AGSAAAVAVN PC-----DVV KTRLQSLQRG VNEDTYSGIL ENSBTAP00000001624/1-322 FYVSFLAGCV AGSAAAVAVN PC-----DVV KTRLQSLQRG INEDTYSGFL 301 350 bmy_04989T0/1-263 ---------E GGEEGVQGPH ---------- GVHTWAWW-G PACTTAGINV ENSTTRP00000011818/1-223 DCARKILRNE GPTAFLKGAY CRALVIAPLF GIAQVVYFLG IAETLLGLPR ENSP00000322020/1-323 DCARKILRHE GPSAFLKGAY CRALVIAPLF GIAQVVYFLG IAESLLGLLQ ENSBTAP00000001624/1-322 DCARKILQNE GPSAFLKGAY CRALVIAPLF GIAQVVYFLG IAETLLGLPR 351 400 bmy_04989T0/1-263 LLM- ENSTTRP00000011818/1-223 VQP- ENSP00000322020/1-323 DPQA ENSBTAP00000001624/1-322 VQP-