KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:14:58 2014 Check: 00 .. Name: ENSP00000458954/1-741 Len: 743 Check: 8983 Weight: 1.00 Name: ENSBTAP00000001625/1-742 Len: 743 Check: 7898 Weight: 1.00 Name: bmy_08629T0/1-552 Len: 743 Check: 9998 Weight: 1.00 Name: BACU020238/1-739 Len: 743 Check: 8316 Weight: 1.00 Name: ENSTTRP00000013979/1-737 Len: 743 Check: 9133 Weight: 1.00 // 1 50 ENSP00000458954/1-741 MAAAEGPVGD GELWQTWLPN HVVFLRLREG LKNQSPTEAE KPASSSLPSS ENSBTAP00000001625/1-742 MAGAEGGPGD GELWQTWLPN HAVFLRLREG LKNQSSTETE KPA-SSLPSS bmy_08629T0/1-552 MAVAEGAAGD CELWQAWLPD HAVFLRLQEG RKNQSPAAAE KPASSSLPLP BACU020238/1-739 MAVAEGAAGD CELWQAWLPD HAVFLRLQEG RKNQSLAAAE KPASSSLPS- ENSTTRP00000013979/1-737 MAAAEGAAGD GELWQAWLPD HAVFLRLREG RKNQSPAAAE KPA--SLPS- 51 100 ENSP00000458954/1-741 P--PPQLLTR NVVFGLGGEL FLWDGEDSSF LVVRLRGPSG GGEEPALSQY ENSBTAP00000001625/1-742 PPLPPQLLTR NLVLGLGGEL FLWDPEESSF LVVRLRGPSG AGEEPSLSQY bmy_08629T0/1-552 PPLPPQLLTR NLVLGLGGEL FLWDGEGSCF LVVRLLDPSG AGEESPLSQY BACU020238/1-739 ---PPQLLTR NLVLGLGGEL FLWDGEGSCF LVVRLLDPSG AGEESPLSQY ENSTTRP00000013979/1-737 ---PPHLLTR NLVLGLGGEL FLWDGEGSSF LVVRLRDPSG AGEESSLSQY 101 150 ENSP00000458954/1-741 QRLLCINPPL FEIYQVLLSP TQHHVALIGI KGLMVLELPK RWGKNSEFEG ENSBTAP00000001625/1-742 QRLLCINPPL FEIYQVLLSP TQHHVALIGI KGLMILELPK RWGKNSEFEG bmy_08629T0/1-552 Q--------- ------VTSP Q--------- ---------- ---------- BACU020238/1-739 QRLLCINPPL FEVYQVLLSP TQHHVALIGI KGLMILELPK RWGKNSEFEG ENSTTRP00000013979/1-737 QRLLCINPPL FEIYQVLLSP AQHHVALIGI KGLMILELPK RWGKNSEFEG 151 200 ENSP00000458954/1-741 GKSTVNCSTT PVAERFFTSS TSLTLKHAAW YPSEILDPHV VLLTSDNVIR ENSBTAP00000001625/1-742 GKSTVNCSTT PVAERFFTSS TSLTLKHAAW YPSEMLEPHI VLLTSDNVIR bmy_08629T0/1-552 ---------- ---------- ---------- ---------- ---TTDCKIS BACU020238/1-739 GKSTVNCSTT PVAERFFTSS TSLTLKHAAW YPSEMLDPHI VLLTSDNVIR ENSTTRP00000013979/1-737 GKSTVNCSTT PVAERFFTSS TSLTLKHAAW YPSEMLDPHI VLLTSDNVIR 201 250 ENSP00000458954/1-741 IYSLREPQTP TNVIILSEAE EESLVLNKGR AYTASLGETA VAFDFGPLAA ENSBTAP00000001625/1-742 IYSLREPQTP TKVIVLSEAE EESLILNKGR AYTASLGETA VAFDFGPLSA bmy_08629T0/1-552 VYK------- ---------- ---------- ------RETA VAFDFGPLSA BACU020238/1-739 IYSLREPQTP TKVIVLSEAE EESLILNKGR AYTASLGETA VAFDFGPLSA ENSTTRP00000013979/1-737 IYSLREPQTP TKVIVLSEAE EESLILNKGR AYTASLGETA VAFDFGPLSA 251 300 ENSP00000458954/1-741 VPKTLFGQNG KDEVVAYPLY ILYENGETFL TYISLLHSPG NIGKLLGPLP ENSBTAP00000001625/1-742 VPKHIFGQKG KEEVAAYPLY ILYENGETFL TYISLLHSPG SVGKLLGPLP bmy_08629T0/1-552 VPKNIFGQKG KDEVLAYPLY ILYENGETFL TYVSLLHSPG SVGKLLGPLP BACU020238/1-739 VPKNIFGQKG KDEVLAYPLY ILYENGETFL TYVSLLHSPG SVGKLLGPLP ENSTTRP00000013979/1-737 VPKNIFGQKG KDEVLAYPLY ILYENGETFL TYVSLLHSPG SVGKLLGPLP 301 350 ENSP00000458954/1-741 MHPAAEDNYG YDACAVLCLP CVPNILVIAT ESGMLYHCVV LEGEEEDDHT ENSBTAP00000001625/1-742 MHPAAEDNYG YDACAVLCLP CVPNILVIAT ESGMLYHCVV LEGEEEDDQT bmy_08629T0/1-552 MHPAAEDNYG YDACAVLCLP CVPNILVIAT ESGMLYHCVV LEGEEEDDQT BACU020238/1-739 MHPAAEDNYG YDACAVLCLP CVPNILVIAT ESGMLYHCVV LEGEEEDDQT ENSTTRP00000013979/1-737 MHPAAEDNYG YDACAVLCLP CVPNILVIAT ESGMLYHCVV LEGEEEDDQT 351 400 ENSP00000458954/1-741 SEKSWDSRID LIPSLYVFEC VELELALKLA SGEDDPFDSD FSCPVKLHRD ENSBTAP00000001625/1-742 SEKSWDSRAD LIPSLYVFEC VELELALKLA SGEDEPFDSD FSCPIKLHRD bmy_08629T0/1-552 SEKSWDSRAD LIPSLYVFEC VELELALKLA SGEDEPFDSD FSCPIKLHR- BACU020238/1-739 SEKSWDSRAD LIPSLYVFEC VELELALKLA SGEDEPFDSD FSCPIKLHRD ENSTTRP00000013979/1-737 SEKSWDSRAD LIPSLYVFEC VELELALKLA SGEDEPFDSD FSCPIKLHRD 401 450 ENSP00000458954/1-741 PKCPSRYHCT HEAGVHSVGL TWIHKLHKFL GSDEEDKDSL QELSTEQKCF ENSBTAP00000001625/1-742 PKCPSRYHCT HEAGVHSVGL TWIHKLHKFL GSDEEDKDSL QELATEQKCF bmy_08629T0/1-552 ---------- ---------- ---------- --DEEDKDSL QELATEQKCF BACU020238/1-739 PKCPSRYHCT HEAGVHSVGL TWIHKLQKFL GSDEEDKDSL QELATEQKCF ENSTTRP00000013979/1-737 PKCPSRYHCT HEAGVHSVGL TWIHKLHRFL GSDEEDKDSL QELATEQKCF 451 500 ENSP00000458954/1-741 VEHILCTKPL PCRQPAPIRG FWIVPDILGP TMICITSTYE CLIWPLLSTV ENSBTAP00000001625/1-742 VEHILCTKPL PCRQPAPIRG FWIVPDILGP TMICITSTYE CLIRPLLSTV bmy_08629T0/1-552 VEHILCTKPL PCRQPAPIRG FWIVPDILGP TMICITSNYE CVIRPLLSTV BACU020238/1-739 VEHILCTKPL PCRQPAPIRG FWIIPDILGP TMICVTSNYE CVVRPLLSTV ENSTTRP00000013979/1-737 VEHILCTKPL PCRQPAPIRG FWIVPDILGP TMICITSNYE CLIRPLLSTV 501 550 ENSP00000458954/1-741 HPASPPLLCT REDVEVAESP LRVLAETPDS FEKHIRSILQ RSVANPAFLK ENSBTAP00000001625/1-742 HPASPPLLCT REDVEVAESP LRILAETPDS FEKHIRSILQ RSVANPAFLK bmy_08629T0/1-552 HPASPPLLCT RDDVEVAQSP LRILAETPDS FEKHIRSILQ RSVANPAFLK BACU020238/1-739 HPASPPLLCT RDDVEVAQSP LRILAETPDS FEKHIRSILQ RSVANPAFLK ENSTTRP00000013979/1-737 HPVSPPLLCT REDVEVAESP LRILAETPDS FEKHIRSILQ RSVANPAFLK 551 600 ENSP00000458954/1-741 ASEKDIAPPP EECLQLLSRA TQVFREQYIL KQDLAKEEIQ RRVKLLCDQK ENSBTAP00000001625/1-742 SSEKDMAPPP EECLQLISRA TQVFREQYIL KQDLAKEEIQ RRVKLLCDQK bmy_08629T0/1-552 SSEKDTAPPP EECLQLISRA TQVFREQYIL KQDLAKEEIQ RRVKLLCDQK BACU020238/1-739 SSEKDTAPPP EECLQLISRA TQVFREQYIL KQDLAKEEIQ RRVKLLCDQK ENSTTRP00000013979/1-737 SSEKDTAPPP EECLQLISRA TQVFREQYIL KQDLAKEEIQ RRVKLLCDQK 601 650 ENSP00000458954/1-741 KKQLEDLSYC REERKSLREM AERLADKYEE AKEKQEDIMN RMKKLLHSFH ENSBTAP00000001625/1-742 KKQLEDLNYC REERKSLREM AERLADKYEE AKEKQEDIMN RMKKVLHSFH bmy_08629T0/1-552 KKQLEDLNYC REERKSLREM AERLADKYEE AKEKQEDIMI ---------- BACU020238/1-739 KKQLEDLNYC REERKSLREM AERLADKYEE AKEKQEDIMT RMKKVLHSFH ENSTTRP00000013979/1-737 KKQLEDLNYC REERKSLREV AERLADKYEE AKEKQEDIMT RMKKVLHSFH 651 700 ENSP00000458954/1-741 SELPVLSDSE RDMKKELQLI PDQLRHLGNA IKQVTMKKDY QQQKMEKVLS ENSBTAP00000001625/1-742 SQLPVLSDSE RDMKKELQLI PDQLRHLGNA IKQVTMKKDY QQRKMEKVLS bmy_08629T0/1-552 --------SE RDMKKELQLI PDQLRHLGNA IKQVTMKKDY QQRKMEKVLS BACU020238/1-739 SQLPVLSDSE RDMKKELQLI PDQLRHLGNA IKQVTMKKDY QQRKMEKVLS ENSTTRP00000013979/1-737 SQLPVLSDSE RDMKKELQLI PDQLRHLGNA IKQVTMKKDY QQRKMEKVLS 701 750 ENSP00000458954/1-741 LPKPTIILSA YQRKCIQSIL KEEGEHIREM VKQINDIRNH VNF ENSBTAP00000001625/1-742 PQKPTITLSA YQRKCIQSIL KEEGEHIREM VKQINDIRNH VNF bmy_08629T0/1-552 PQKPTITLSA YQRKCIQSIL KEE------- ---------- --- BACU020238/1-739 PQKPTITLSA YQRKCIQSIL KEEGEHIREM VKQINDIRNH VNF ENSTTRP00000013979/1-737 PQKPTITLSA YQRKCIQSIL KEEGEHIREM VKQINDIRNH VNF