KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:14:59 2014 Check: 00 .. Name: ENSP00000361189/1-859 Len: 938 Check: 2340 Weight: 1.00 Name: ENSBTAP00000001628/1-868 Len: 938 Check: 9098 Weight: 1.00 Name: ENSTTRP00000014285/1-837 Len: 938 Check: 4831 Weight: 1.00 Name: bmy_17955T0/1-800 Len: 938 Check: 2346 Weight: 1.00 Name: BACU005467/1-901 Len: 938 Check: 1318 Weight: 1.00 // 1 50 ENSP00000361189/1-859 MRRCRWAALA LGLLRLCL-- ---------- ---------- ---------- ENSBTAP00000001628/1-868 MGRGPPAVLA PWMLFLSL-- ---------- ---------- ---------- ENSTTRP00000014285/1-837 MGRGLRAVLA LGLLFHRL-- ---------- ---------- ---------- bmy_17955T0/1-800 -MRFLALASL LCILLLCLSV FSAEGRRHPR HPAKPGKSKP CCPRVPGPDL BACU005467/1-901 -MRFLALARL LCILLLCLSV FSAEGRRHPR HSAKPGKGKP CCPRVPGPDL 51 100 ENSP00000361189/1-859 ----AQANFA PHFFDNGVGS TNGNMALFSL PEDTPVGSHV YTLNGTDPEG ENSBTAP00000001628/1-868 ----AQANFA PHFFDNGAGS TNGNMALFSL PEDTPVGSHV YTLNGTDPEG ENSTTRP00000014285/1-837 ----ALANFA PYFFDNGVGS TNGNMALFSL PEDTPVGSHV YTLNGTDPEG bmy_17955T0/1-800 MTRKAQANFA PYFFDNGVGS TNGNMALFSL PEDTPVGSHV YTLNGTDPEG BACU005467/1-901 MTRKAQANFA PYFFDNGVGS TNGNMALFSL PEDTPVGSHV YTLNGTDPEG 101 150 ENSP00000361189/1-859 DPISYHISFD PSTRSVFSVD PTFGNITLVE ELDREREDEI EAIISISDGL ENSBTAP00000001628/1-868 DPVSYHISFN PSARSVFSVD PNLGNITLIE ELDREREDEI EAIISISDGL ENSTTRP00000014285/1-837 DPVSYHISFD PSARSVFSVD PNFGNITLIE ELDRERXXXX XXXXXXXXXX bmy_17955T0/1-800 DPISYHISFD PSARSIFSVD PNFGNITLIE ELDREREDEI EAIISISDGL BACU005467/1-901 DPISYHISFD PSTRSVFSVD PNFGNITLIE ELDREREDEI EAIISISDGL 151 200 ENSP00000361189/1-859 NLVAEKVVIL VTDANDEAPR FIQEPYVALV PEDIPAGSII FKVHAVDRDT ENSBTAP00000001628/1-868 NLVAEKVTIL VTDANDEAPR FIQEPYVVQV PEDTPSGSSI ARVRAVDRDT ENSTTRP00000014285/1-837 XXVAEKVTIL VTDANDEAPR FIQEPYIVQV PEDTPAGSSI AKVRAVDRDT bmy_17955T0/1-800 NLVAEKVTIL VTDANDEAPR FIQEPYVVQV PEDTPAGSSI AKVHAVDRDT BACU005467/1-901 NLVAEKVTIL VTDSNDEAPR FIQEPYVVQV PEDTPAGSSI AKVHAVDRDT 201 250 ENSP00000361189/1-859 GSGGSVTYFL Q--------- ---------- ---------- -----NLHSP ENSBTAP00000001628/1-868 GSAGSVTYFL K--------- ---------- ---------- -----YPHPT ENSTTRP00000014285/1-837 GSGGSVTYFL K--------- ---------- ---------- -----NPHST bmy_17955T0/1-800 GSGGSVIYFL KVRKDGEDPR SGSRAGDPGA TRVPPQGPAC PSLLQNPHST BACU005467/1-901 GSGGSVTYFL K--------- ---------- ---------- -----TPHST 251 300 ENSP00000361189/1-859 -FAVDRHSGV LRLQAGATLD YERSRTHYIT VVAKDGGGRL HGADVVFSAT ENSBTAP00000001628/1-868 EFSVDRHSGV LRLRAGAILD FEKARAHFVT VVAKDGGGKL RGADVVLSAT ENSTTRP00000014285/1-837 KFSVDRHSGV LRLQAGATLD YEKAPAHFIA VVAKDGGGRL RGASVVLSAT bmy_17955T0/1-800 KFSVDRHSGV LRLQAGATLD YEKTRAHFIA VVAK------ ---------- BACU005467/1-901 KFSVDRHSGV LRLQAGATLD YEKAQAHFIA VVAKDGGGRL QGANVALSAT 301 350 ENSP00000361189/1-859 TTVTVNVEDV QDMAPVFVGT PYYGYVYEDT LPGSEVLKVV AMDGDRGKPN ENSBTAP00000001628/1-868 TVVTVNVEDV QDMGPVFVGT PYYGYVYEDT LPGSEVLMVV AMDGDRGKPN ENSTTRP00000014285/1-837 TTVTVNVEDV QDMAPVFVGT PYYGYVYEDT LPGSEVLTVV AMDGDRGKPN bmy_17955T0/1-800 ---VTEREEW QHL-----GS P--------Q PPSGE----- ---------- BACU005467/1-901 TTVTVNVEDM QDMAPVFVGT PYYGYVYEDT LPGSEVLTVI AMDGDRGKPN 351 400 ENSP00000361189/1-859 RILYSLVNGN DGAFEINETS GAISITQSPA QLQREVYELH VQVTEMSPAG ENSBTAP00000001628/1-868 RVLYSLVNGS DGAFEINETS GAISVMQSPS QLRREVYELH VQVTEVSSAG ENSTTRP00000014285/1-837 RVLYSLVNGS DGAFEINETS GAISITQSPA QLRREAYELH VQVTEVSSAG bmy_17955T0/1-800 ---------- -AALGLEQLG STIG------ ---------- ------GQLG BACU005467/1-901 RVLYSLVNGT DGAFEINETS GAISITQSPA RLRREAYELH VQVTEVSSAG 401 450 ENSP00000361189/1-859 SPAAQATVPV TIRIVDLNNH PPTFYGESGP QNRFELSMNE HPPQGEILRG ENSBTAP00000001628/1-868 TPAAQAMVPV TIRIVDLNNH PPTFYGESGP QNRFELSMYE HPPQGEILRG ENSTTRP00000014285/1-837 TPAAQAMAPV TIRIVDLNNH PPTFYGESGP QNRFELSMYE HPPQGEILRG bmy_17955T0/1-800 AEAAQXMAPV TIRIVDLNNH PPTFYGESGP QNRFELSMYE HPPQGEILRG BACU005467/1-901 TPAAQAMAPV TIRIVNLNNH PPTFYGESGP QNRFELSMYE HPPQGEILRG 451 500 ENSP00000361189/1-859 LKITVNDSDQ GANAKFNLQL VGPRGIFRVV PQTVLNEAQV TIIVENSAAI ENSBTAP00000001628/1-868 LKITVNDSDQ GANAKFNLRL VGPGGIFRVV PQTVLNEAQV TIIVENSAAI ENSTTRP00000014285/1-837 LKITVNDSDQ GANAKFNLRL VGPGGIFRVV PQTVLNEAQV TIIVENSATI bmy_17955T0/1-800 LKITVNDSDQ GANAKFNLRL VGPGGIFRVV PQTVLNEAQV TIIVENSATI BACU005467/1-901 LKITVNDSDQ GANAKFNLRL VGPGGIFRVV PQTVLNEAQV TIIVENSAAI 501 550 ENSP00000361189/1-859 DFEKSKVLTF KLLAVEVNTP EKFSSTADVV IQLLDTNDNV PKFDSLYYVA ENSBTAP00000001628/1-868 DFEKSKVLTF KLLAIEVNTP EKFSSTADVV IQLLDTNDNV PKFTSHYYVA ENSTTRP00000014285/1-837 DFEKFKVLTF KLLAIEVNTP EKFSSTADIV IQLLDTNDNV PKFTSHYYIA bmy_17955T0/1-800 DFEKFKVLTF K--------- ---------- ---------- ---------- BACU005467/1-901 DFEKFKVLTF KLLAIEVNTP EKFSSTADIV IQLLDTNDNV PKFTSHYYIA 551 600 ENSP00000361189/1-859 RIPENAPGGS SVVAVTAVDP DTGPWGEVKY STYGTGADLF LIHPSTGLIY ENSBTAP00000001628/1-868 RIPENAPGGS NVLAVTAVDP DSGPWGEVKY SIYGSGADLF LIHPSSGIIY ENSTTRP00000014285/1-837 RIPENAPGGS NVLAVT---- ---------- ---------F LIHPSSGIIY bmy_17955T0/1-800 ---------- ------AVDP DTGPWGEVKY SIYGSGADLF LIHPSSGIIY BACU005467/1-901 RIPENAPGGS NVLAVTAVDP DTGPWGEVKY SIYGSGADLF LIHPSSGIIY 601 650 ENSP00000361189/1-859 TQPWASLDAE ATARYNFYVK AEDMEGKYSV AEVFITLLDV NDHPPQFGKS ENSBTAP00000001628/1-868 TQPWASLDAE ATARYNFYVK AEDMEGRYSL AEVFITLLDV NDHYPQFGKS ENSTTRP00000014285/1-837 TQPWASLDAE DTARYNFYVK AEDMEGRYSL AEVFVTLLDV NDHYPQFGKS bmy_17955T0/1-800 TQPWANLDAE DTARYNFYVK AEDMEGRYSL AEVFVTLLDV NDHYPQFGKS BACU005467/1-901 TQPWANLDAE GTARYNFYVK AEDMEGRYSL AEVFVTLLDV NDHYPQFGKS 651 700 ENSP00000361189/1-859 VQKKTMVLGT PVKIEAIDED AEEPNNLVDY SITHAEPANV FDINSHTGEI ENSBTAP00000001628/1-868 VQEKTMVLGT PVKIEATDQD AEEPNNLVDY SITHAEPANV FDINAHTGEI ENSTTRP00000014285/1-837 VQEKTMVLGT PVKIEATDQD AEEPNNLVDY SIIHAEPANV FDIDMHTGEI bmy_17955T0/1-800 VQEKTMVLGT PVKIEATDQD AEEPNNLVDY SITHAEPANV FDIDTHTGEI BACU005467/1-901 VQEKTMVLGT PVKIEATDQD AEEPNNLVDY SITHAEPANV FDIDAHTGEI 701 750 ENSP00000361189/1-859 WLKNSIRSLD ALHNITPGRD CLWSLEVQAK DRGSPSFSTT ALLKIDITDA ENSBTAP00000001628/1-868 WLKNSIRSLD ALHNITPNGD RTWSLEVQAK DRGSPSFSTT ALLKIDIIDT ENSTTRP00000014285/1-837 RLKNSIRSLD ALHNITPSGD HTWSLEVQAK DRGSPSFSTT ALLKIDVVDT bmy_17955T0/1-800 RLKNSIRSLD ALHNITPSGD HTWSLEVQAK DRGSPSFSTT ALLKIDIVDT BACU005467/1-901 WLKNSIRSLD ALHNVTPSGD HTWSLEVQAK DRGSPSFSTT ALLKIDIVDT 751 800 ENSP00000361189/1-859 ETLSRSPMAA FLIQTKDNPM KAVGVLAGTM ATVVAITVLI STATFWRNKK ENSBTAP00000001628/1-868 EMLSRSPMAA FLMQTKDNPM KAVGVLAGIM AIIVAITVLI STATFWRNKK ENSTTRP00000014285/1-837 EMLSRNPMAA FLMQTKDNPM KAVGVLAGIM AIIVAITVLI STATFWRNKK bmy_17955T0/1-800 EMLSRNPMAA FLMQTKDNPM KAVGVLAGIM AIIVAITVLI STATFWRNKK BACU005467/1-901 EMLSRNPMAA FLMQTKDNPM KAVGVLAGIM AIIVAITVLI STATFWRNKK 801 850 ENSP00000361189/1-859 SNKVLPMRRV LRKRPSPAPR TIRIEWLKSK STKAATKFML KEKPPNENCN ENSBTAP00000001628/1-868 SNKVQPVRRV LRKRPSPAPR SVRIEWLKFR RTKAADKFVL KEAPPNENCN ENSTTRP00000014285/1-837 SNKVLPVRRV LRKRPSPAPR TAGIKWLKFR RTKAADRFVL REDPPNENCN bmy_17955T0/1-800 SSKVLPVRRV LRKRPNPAPR TVRIEWLKFR RTKAVDKFVL REDPPNENCN BACU005467/1-901 SNKVLPVRRV LRKRPSPAPR TGRIEWLKFR RTKAVDKFVL REDPPNENCN 851 900 ENSP00000361189/1-859 NNSP-ESSLL PRAPALPPPP SVAPSTGAAQ WTVPTVSGSL TPQPT-QPPP ENSBTAP00000001628/1-868 NNSSRGSTPA PQAPAPPPPP SPAPSVGQAP WTVPTVSGSL APQQPQQPSP ENSTTRP00000014285/1-837 NNSL-GSAPP PKVPAPPPPP STAPSMGPAH WMVPTVSGSL APQQL-HPSP bmy_17955T0/1-800 NNSL-GSAPP PKAPAPPPPP SMAPSMGPAH WMVPTVSGSL APQQP-HPSP BACU005467/1-901 NNSL-GSAPP PKAPAPPPPP SMAPSMGPAH WMVPTVSGSL APQQP-HPSP 901 950 ENSP00000361189/1-859 KPKTM----- -GSPVQSTLI SELKQKFEKK SVHNKAYF ENSBTAP00000001628/1-868 KPRAVAKRKA VGSPVQSALV SELRQKFEKK NLHSKAYF ENSTTRP00000014285/1-837 KPKAL----- -GRPVQSALV SELRQKFEKK NVHNEAYF bmy_17955T0/1-800 KPKALAKPKA AGRPVQSALV SELRQKFEKK NVHNKAYF BACU005467/1-901 KPKALAKPKA AGRPIQSALV SELRQKFEKK NVHNKAYF