KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:15:00 2014 Check: 00 .. Name: BACU004664/1-741 Len: 829 Check: 5133 Weight: 1.00 Name: ENSBTAP00000001639/1-467 Len: 829 Check: 7757 Weight: 1.00 Name: bmy_03053T0/1-468 Len: 829 Check: 7432 Weight: 1.00 Name: ENSP00000358301/1-477 Len: 829 Check: 1819 Weight: 1.00 // 1 50 BACU004664/1-741 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001639/1-467 MGAGALALGA SEPCNLSSAA PVPDGAATAA RLLVPASPPA SLLTSASEGP bmy_03053T0/1-468 MGAGALALGA SEPCNLSTAA PLPDGAATAA RLLVPASPPA SLLTPASEGS ENSP00000358301/1-477 MGAGVLVLGA SEPGNLSSAA PLPDGAATAA RLLVPASPPA SLLPPASESP 51 100 BACU004664/1-741 ---------- MGLLMALIVL LIVAGNVLVI VAIAKTPRLQ TLTNLFIMSL ENSBTAP00000001639/1-467 PLPSQQWTAG MGLLMAFIVL LIVVGNVLVI VAIAKTPRLQ TLTNLFIMSL bmy_03053T0/1-468 APLSQQWTAG MGLLMALIVL LIVAGNVLVI VAIAKTPRLQ TLTNLFIMSL ENSP00000358301/1-477 EPLSQQWTAG MGLLMALIVL LIVAGNVLVI VAIAKTPRLQ TLTNLFIMSL 101 150 BACU004664/1-741 ASADLVMGLL VVPFGATIVV WGRWEYGSFF CELWTSVDVL CVTASIETLC ENSBTAP00000001639/1-467 ASADLVMGLL VVPFGATIVV WGRWEYGSFF CELWTSVDVL CVTASIETLC bmy_03053T0/1-468 ASADLVMGLL VVPFGATIVV WGRWEYGSFF CELWTSVDVL CVTASIETLC ENSP00000358301/1-477 ASADLVMGLL VVPFGATIVV WGRWEYGSFF CELWTSVDVL CVTASIETLC 151 200 BACU004664/1-741 VIALDRYLAI TSPFRYQSLL TRARARALVC TVWAITALVS FLPILMHWWR ENSBTAP00000001639/1-467 VIALDRYLAI TSPFRYQSLL TRARARALVC TVWAISALVS FLPIFMQWWR bmy_03053T0/1-468 VIALDRYLAI TSPFRYQSLL TRARARALVC TVWAISALVS FLPILMHWWR ENSP00000358301/1-477 VIALDRYLAI TSPFRYQSLL TRARARGLVC TVWAISALVS FLPILMHWWR 201 250 BACU004664/1-741 AEGDEARRCY NDPKCCDFVT NRAYAIASSV VSFYVPLCIM AFVYLRVFRE ENSBTAP00000001639/1-467 DKDAKASGCY NDPECCDFII NEGYAITSSV VSFYVPLCIM AFVYLRVFRE bmy_03053T0/1-468 AEGDEARRCY NDPKCCDFVT NRAYAIASSV VSFYVPLCIM AFVYLRVFRE ENSP00000358301/1-477 AESDEARRCY NDPKCCDFVT NRAYAIASSV VSFYVPLCIM AFVYLRVFRE 251 300 BACU004664/1-741 AQKQVKKIDS CERRFLSGPT RPPSPAPS-- ------PG-- ---------- ENSBTAP00000001639/1-467 AQKQVKKIDS CERRFLSGPA RLPSPAPS-- ------PGPP LPA-----AT bmy_03053T0/1-468 AQKQVKKIDS CERRFLSGPT RPPSPAPS-- ------PGPP LPAAAA--SP ENSP00000358301/1-477 AQKQVKKIDS CERRFLGGPA RPPSPSPSPV PAPAPPPGPP RPAAAAATAP 301 350 BACU004664/1-741 --------RR PSRLVALREQ KALKTLGIIM GVFTLCWLPF FLANVVKAFH ENSBTAP00000001639/1-467 VANGRANKRR PSRLVALREQ KALKTLGIIM GVFTLCWLPF FLANVVKAFH bmy_03053T0/1-468 VANGRASKRR PSRLVALREQ KALKTLGIIM GVFTLCWLPF FLANVVKAFH ENSP00000358301/1-477 LANGRAGKRR PSRLVALREQ KALKTLGIIM GVFTLCWLPF FLANVVKAFH 351 400 BACU004664/1-741 RDLVPDSLFV FFNWLGYXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000001639/1-467 RDLVPDRLFV FFNWLGYANS AFNPIIYCRS PDFRKAFQRL LCCARRAACG bmy_03053T0/1-468 RDLVPDSLFV FFNWLGYANS AFNPIIYCRS PDFRKAFQRL LCCARRAARG ENSP00000358301/1-477 RELVPDRLFV FFNWLGYANS AFNPIIYCRS PDFRKAFQGL LCCARRAARR 401 450 BACU004664/1-741 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000001639/1-467 SHAAA----- ---------- ---------- ---------- ---------- bmy_03053T0/1-468 SHAAA----- ---------- ---------- ---------- ---------- ENSP00000358301/1-477 RHATH----- ---------- ---------- ---------- ---------- 451 500 BACU004664/1-741 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000001639/1-467 ---------- ---------- ---------- ---------- ---------- bmy_03053T0/1-468 ---------- ---------- ---------- ---------- ---------- ENSP00000358301/1-477 ---------- ---------- ---------- ---------- ---------- 501 550 BACU004664/1-741 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000001639/1-467 ---------- ---------- ---------- ---------- ---------- bmy_03053T0/1-468 ---------- ---------- ---------- ---------- ---------- ENSP00000358301/1-477 ---------- ---------- ---------- ---------- ---------- 551 600 BACU004664/1-741 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000001639/1-467 ---------- ---------- ---------- ---------- ---------- bmy_03053T0/1-468 ---------- ---------- ---------- ---------- ---------- ENSP00000358301/1-477 ---------- ---------- ---------- ---------- ---------- 601 650 BACU004664/1-741 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXGGR ENSBTAP00000001639/1-467 ---------- ---------- ---------- ---------- ---------- bmy_03053T0/1-468 ---------- ---------- ---------- ---------- ---------- ENSP00000358301/1-477 ---------- ---------- ---------- ---------- ---------- 651 700 BACU004664/1-741 QRLEPGRIEP PGLCLGFQGV GLGAPPRLPA SPARARALRP GRERARAPLN ENSBTAP00000001639/1-467 ---------- ---------- --GDPPRALG CLAVARP--- ------SPSP bmy_03053T0/1-468 ---------- ---------- --GDPPRASG CLAVAGP--- ------PPSP ENSP00000358301/1-477 ---------- ---------- --GDRPRASG CLARPGP--- ------PPSP 701 750 BACU004664/1-741 GFLGEEEICV YSRPKAGEFE ARKPRLHHPR QTEKPHTIAQ KGRFGEGWES ENSBTAP00000001639/1-467 GAASDDD--- ---------- ---------- ---------- ---------- bmy_03053T0/1-468 GAASDDD--- ---------- ---------- ---------- ---------- ENSP00000358301/1-477 GAASDDD--- ---------- ---------- ---------- ---------- 751 800 BACU004664/1-741 GLLLFVGFFF LFVVRPSFVG ACDTSLDFSS PLPPQVIFNT LCDDREGKGE ENSBTAP00000001639/1-467 ---------- ---------- -DDDDEDDVG AAPPVRLLEP WA-GYNGGAA bmy_03053T0/1-468 ---------- ---------- -DDD--DDVG AAPPARLLEP WA-GYNGGAA ENSP00000358301/1-477 ---------- ---------- -DD---DVVG ATPPARLLEP WA-GCNGGAA 801 850 BACU004664/1-741 ALGDKSLTWL LSRSREQERS SGERGENDS ENSBTAP00000001639/1-467 ANSDSSP--- -----DEPSR AGCASESKV bmy_03053T0/1-468 ADSDSSL--- -----DEPSH PGCASDSKV ENSP00000358301/1-477 ADSDSSL--- -----DEPCR PGFASESKV