KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:15:01 2014 Check: 00 .. Name: ENSP00000220809/1-562 Len: 654 Check: 1222 Weight: 1.00 Name: ENSBTAP00000001642/1-566 Len: 654 Check: 534 Weight: 1.00 Name: ENSTTRP00000002130/1-562 Len: 654 Check: 2849 Weight: 1.00 Name: bmy_09717T0/1-624 Len: 654 Check: 3735 Weight: 1.00 Name: BACU009422/1-590 Len: 654 Check: 1220 Weight: 1.00 // 1 50 ENSP00000220809/1-562 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001642/1-566 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002130/1-562 ---------- ---------- ---------- ---------- ---------- bmy_09717T0/1-624 MIRTDVDCLA HVTVSCEFVG GNASGCSSCG TDRGSLAAAH TIHTNGHDLE BACU009422/1-590 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000220809/1-562 ---------M DAMKRGLCCV LLLCGAVFVS PSQEIHARFR RGARSYQ--V ENSBTAP00000001642/1-566 --------MM SAMKTEFLCV LLLCGAVFTS PSQETYRRLR RGARSYK--V ENSTTRP00000002130/1-562 ---------M NAVKREILCV LLLCGAVFSS PSQEIHRRLR RGARSHR--- bmy_09717T0/1-624 ELKGHSEEAM SVTKRELLCV LLLCGAVFSS PSQEIHRRLR RGARSHRGGA BACU009422/1-590 ---------- --MKRELLCV LLLCGAVFSS PSQEIHRRLR RGARSHRGGV 101 150 ENSP00000220809/1-562 ICRDEKTQMI YQQHQSWLRP VLRSNRVEYC WCNSGRAQCH SVPVKSCSEP ENSBTAP00000001642/1-566 TCRDGKTQMT YRQHDSWLRP LLRGNQVEHC WCDGGRAQCH SVPVRSCSEP ENSTTRP00000002130/1-562 TCRDEKTQMT YLQHESWLRP LLRGNRVEHC WCNGGRAQCH SVPVNSCSTP bmy_09717T0/1-624 TCRDEKTQMT YLQHESWLRP LLRGNRVEHC WCNGGRAQCH SVPVNSCSKS BACU009422/1-590 TCRDEKTQMT YLQHESWLRP LLRGNRVEHC WCNSGRAQCH SVPVNSCSKP 151 200 ENSP00000220809/1-562 RCFNGGTCQQ ALYFSDFVCQ CPEGFAGKCC EIDTRATCYE DQGISYRGTW ENSBTAP00000001642/1-566 WCFNGGTCRQ ALYSSDFVCQ CPEGFMGKLC EIDATATCYK DQGVAYRGTW ENSTTRP00000002130/1-562 RCFNRGTCWQ ALYSSEFVCQ CPEGFIGKRC EIDASATCYQ DQGITYRGTW bmy_09717T0/1-624 QCFNGGTCWQ ALYSSEFVCQ CPEGFIGKHC EIDASATCYK DRGVTYRGRW BACU009422/1-590 QCFNRGTCWQ ALYSSEFVCQ CPEGFIGKRC EIDASATCYK DRGVTYRGRW 201 250 ENSP00000220809/1-562 STAESGAECT NWNSSALAQK PYSGRRPDAI RLGLGNHNYC RNPDRDSKPW ENSBTAP00000001642/1-566 STAESGAECA NWNSSGLAMK PYSGRRPNAI RLGLGNHNYC RNPDQDSKPW ENSTTRP00000002130/1-562 STAESGAECV NWNSSSLAMK PYSGRRPDAL RLGLGNHNYC RNPDQDLKPW bmy_09717T0/1-624 STAESGAECV NWNSSSLAVK PYSGRRPDAI RLGLGNHNYC RNPDQDSKPW BACU009422/1-590 STAESGAECV NWNSSSLAMK PYSGRRPDAM RLGLGNHNYC RNPDQDSKPW 251 300 ENSP00000220809/1-562 CYVFKAGKYS SEFCSTPACS ---EGNSDCY FGNGSAYRGT HSLTESGASC ENSBTAP00000001642/1-566 CYVFKAGKYI SEFCSTPACA KVAEEDGDCY TGNGLAYRGT RSHTKSGASC ENSTTRP00000002130/1-562 CYIFKAGKYV SEFCSTPACG K--EKDGDCY QGKGLAYRGT RSLTTSGASC bmy_09717T0/1-624 CYIFKAGKYI AEFCSTPACG K--EKDGDCY QGKGLAYRGT HSLTTSGASC BACU009422/1-590 CYIFKAGKYI PEFCSTPACG K--EKDGDCY QGKGLAYRGT HSLTASGASC 301 350 ENSP00000220809/1-562 LPWNSMILIG KVYTAQNPSA QALGLGKHNY CRNPDGDAKP WCHVLKNRRL ENSBTAP00000001642/1-566 LPWNSVFLTS KIYTAWKSNA PALGLGKHNH CRNPDGDAQP WCHVWKDRQL ENSTTRP00000002130/1-562 LPWSSMILMG KINTAWKSNA QALGLGKHNH CRNPDGDAQP WCHVLKDGQL bmy_09717T0/1-624 LPWSSMILMG KIYTAWKSNA QALGLGKHNH CRNPDGDAQP WCHVLKDRQL BACU009422/1-590 LPWSSMILMR KIYTAWKSNA QALGLGKHNH CRNPDGDAQP WCHVLKDRQL 351 400 ENSP00000220809/1-562 TWEYCDVPSC ---------- ---------- --------ST CGLRQYSQPQ ENSBTAP00000001642/1-566 TWEYCDVPQC ---------- ---------- --------VT CGLRQYKRPQ ENSTTRP00000002130/1-562 TWEYCDVPQC ---------- ---------- --------VT CGLRQYKQPQ bmy_09717T0/1-624 TWEYCDVPQC ---------- ---------- --------VT CGLRRYQQPQ BACU009422/1-590 TWEYCDVPQC GCSPAFSQNP VNTGGRGYPE GVETERNAVT CGLRRYQQPQ 401 450 ENSP00000220809/1-562 FRIKGGLFAD IASHPWQAAI FAKHRRSPGE RFLCGGILIS SCWILSAAHC ENSBTAP00000001642/1-566 FRIKGGLFAD ITSHPWQAAI FVKNRRSPGE RFLCGGILIS SCWVLSAAHC ENSTTRP00000002130/1-562 LRIKGGLFAD ITSHPWQAAI FVRNRRSPGE RFLCGGVLIS SCWVLSAAHC bmy_09717T0/1-624 LRIKGGLFAD ITSHPWQAAI FARNRRSPGE RFLCGGVLIS SCWVLSAAHC BACU009422/1-590 LRIKGGLYAD ITSHPWQAAI FVRNRRSPGE RFLCGGVLIS SCWVLSAAHC 451 500 ENSP00000220809/1-562 FQERFPPHHL TVILGRTYRV VPGEEEQKFE VEKYIVHKEF DDDTYDNDIA ENSBTAP00000001642/1-566 FQERYPPHHL KVFLGRTYRL VPGEEEQTFE VEKYIIHKEF DDDTYDNDIA ENSTTRP00000002130/1-562 FQERYPPNHL KVVLGRTYRL VPGKEEQTFE VEKYIVHKEF DDDTYNNDIA bmy_09717T0/1-624 FQERYPPNHL KVVLGRTYRL VPGKEEQTFE VEKYIVHKEF DDDTYNNDIA BACU009422/1-590 FQERYPPNHL KVVLGRTYRL VPGKEEQTFE VEKYIVHKEF DDDTYNNDIA 501 550 ENSP00000220809/1-562 LLQLKSDSSR CAQESSVVRT VCLPPADLQL PDWTECELSG YGKHEALSPF ENSBTAP00000001642/1-566 LLHLKSDSLT CARESASVRT ICLPDASLQL PDWTECELSG YGKHESSSPF ENSTTRP00000002130/1-562 LLQLKSDSLT CALESNAVRT VCLPDAGLQL PDWTECELSG YGKHEASSPF bmy_09717T0/1-624 LLQLKSDSLT CALESNAVRT VCLPDAGLKL PDWTECELSG YGKHEASSPF BACU009422/1-590 LLQLKSDSLT CALESNAVRT VCLPDASLKL PDWTECELSG YGKHEASSPF 551 600 ENSP00000220809/1-562 YSERLKEAHV RLYPSSRCTS QHLLNRTVTD NMLCAGDTRS GGPQANLHDA ENSBTAP00000001642/1-566 FSERLKEAHV RLYPSSRCTS QHLFNRTVTN NMLCAGDTRS GGDHTNLHDA ENSTTRP00000002130/1-562 YSERLKEAHV RLYPSSRCTS QYLFNRAVTN NMLCAGDTRS GGDQANLHDA bmy_09717T0/1-624 FSERLKEAHV RLYPSSRCTS QYLFNRTVTN NMLCAGDTRS GGDQANLHDA BACU009422/1-590 FSERLKEAHV RLYPSSRCTS QYLFNRTVTN NMLCAGDTRS GGDQVNLHDA 601 650 ENSP00000220809/1-562 CQGDSGGPLV CLNDGRMTLV GIISWGLGCG QKDVPGVYTK VTNYLDWIRD ENSBTAP00000001642/1-566 CQGDSGGPLV CMKDNHMTLV GIISWGLGCG RKDVPGVYTK VTNYLDWIRD ENSTTRP00000002130/1-562 CQGDSGGPLV CMKDDHMILV GIISWGLGCG QKGVPGVYTK VTNYLDWVRD bmy_09717T0/1-624 CQGDSGGPLV CMKDNHMTLV GIISWGLGCG QKGIPGVYTK VTNYLDWVWD BACU009422/1-590 CQGDSGGPLV CMKDDHMTLV GIISWGLGCG QKGIPGVYTK VTNYLDWVRD 651 700 ENSP00000220809/1-562 NMRP ENSBTAP00000001642/1-566 NTRP ENSTTRP00000002130/1-562 NTRP bmy_09717T0/1-624 NTRP BACU009422/1-590 NTRP