KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:15:03 2014 Check: 00 .. Name: ENSP00000308770/1-296 Len: 299 Check: 6227 Weight: 1.00 Name: ENSBTAP00000001650/1-296 Len: 299 Check: 5984 Weight: 1.00 Name: ENSTTRP00000012556/1-296 Len: 299 Check: 4535 Weight: 1.00 Name: bmy_18788T0/1-221 Len: 299 Check: 7239 Weight: 1.00 Name: BACU015725/1-222 Len: 299 Check: 399 Weight: 1.00 // 1 50 ENSP00000308770/1-296 MLSPKDILRK DLKLVHGYPM TCAFASNWEK IEQFHSRPDD IVIATYPKSG ENSBTAP00000001650/1-296 MTSPKDVLRK NLKLIHGCPI TYAFANNWEK IEQFQSRPDD IMIVTYPKSG ENSTTRP00000012556/1-296 MTSQKDVLRK NLKIVHGCPI TYAFANNWEK IEQFQSRPDD IVIATYPKSG bmy_18788T0/1-221 MTSQKDVLRK NLKLVHGCPI TYAFANNWEK IEQFQSRPDD IVIATYPKSG BACU015725/1-222 MTSQKDVLRK NLKVVHGCPI TYAFANNWEK IEQFQSRPDD IVIATYPKSG 51 100 ENSP00000308770/1-296 TTWVSEIIDM ILNDGDIEKC KRGFITEKVP MLEMTLPGLR TSGIEQLEKN ENSBTAP00000001650/1-296 TTWISEIVDM VLHDGDVEKC KRDVITAKVP MLELALPGLR TSGLEQLEKN ENSTTRP00000012556/1-296 TTWVSEILDM VLNDGDVENC KRDVITVKVP MLEMALPGLG TSGIEQLEKN bmy_18788T0/1-221 TTWISEILDM VLNDGDVXNC KRDVITVKVP MLEMALPGLR TS-------- BACU015725/1-222 TTWISEILDM VLNDGDVENC KRDVITVKVP MLEMALPGLR TSGIEQLEKN 101 150 ENSP00000308770/1-296 PSPRIVKTHL PTDLLPKSFW ENNCKMIYLA RNAKDVSVSY YHFDLMNNLQ ENSBTAP00000001650/1-296 PSPRVVKTHL PIDLIPKSFW ENNCKIIYLA RNAKDVAVSF YHFDLMNNLQ ENSTTRP00000012556/1-296 PSPRLVKTHL PIDLIPKSFW ENNCKMIYLA RNAKDVAVSF YHFDLMNNLQ bmy_18788T0/1-221 ---------- ---------- ---------- ---------- ---------- BACU015725/1-222 PS-------- ---------- ---------- ---------- ---------- 151 200 ENSP00000308770/1-296 PFPGTWEEYL EKFLTGKVAY GSWFTHVKNW WKKKEEHPIL FL---YYEDM ENSBTAP00000001650/1-296 PLPGTWGEYL EKFLTGNVAY GSWFNHVKSW WKKKEGHPIL FL---FYEDM ENSTTRP00000012556/1-296 PLPGTWGEYL EKFLTGNVAF GSWFNHVKSW WKKKEEHPIL FL---FYEDM bmy_18788T0/1-221 ---------- -------VAF GSWFNHVKSW WKKKEEHPIL FL---FYEDM BACU015725/1-222 ---------- ---------- ---------P RLVKTHLPID LIPKSFWENN 201 250 ENSP00000308770/1-296 KENPKEEIKK IIRFLEKNLN DEILDRIIHH TSFEVMKDNP LVNYTHLPTT ENSBTAP00000001650/1-296 KENPKQEIKK VVRFLEKNLD DEILDKIIYH TSFEMMKDNP LVNYTHLPSE ENSTTRP00000012556/1-296 KENPKKEIKK IVRFLEKNLN DEILDKIIHH TSFEMMKDNP LVNYTHLPST bmy_18788T0/1-221 KENPKKEIKK XVRFLEKNLN DEILDKIIHH TSFEMMKDNP LVNYTHLPST BACU015725/1-222 CKNPKKEIKK IVRFLEKNLN DEILDKIIHH TSFEMMKDNP LVNYTHLPST 251 300 ENSP00000308770/1-296 VMDHSKSPFM RKGTAGDWKN YFTVAQNEKF DAIYETEMSK TALQFRTEI ENSBTAP00000001650/1-296 VMDHSKSSFM RKGIAGDWKN YFTVAQNEKF DAIYKKEMSE TELQFRTEI ENSTTRP00000012556/1-296 VMDHSKSSFM RKGITGDWKN YFTVAQNEKF DAIYKKEMSE TELHFRTEI bmy_18788T0/1-221 VMDHSKSSFM RKGIVGDWKH YFTVAQNEKF DAIYKKEMSE TELHFRTEI BACU015725/1-222 VMDHSKSSFM RKGIVGDWKH YFTVAQNEKF DAIYKKEMSE TELHFRTEI