KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:15:10 2014 Check: 00 .. Name: ENSP00000337383/1-1036 Len: 1065 Check: 1943 Weight: 1.00 Name: BACU004881/1-942 Len: 1065 Check: 6284 Weight: 1.00 Name: ENSBTAP00000001675/1-1031 Len: 1065 Check: 8172 Weight: 1.00 Name: bmy_20704T0/1-860 Len: 1065 Check: 7107 Weight: 1.00 Name: ENSTTRP00000012884/1-1039 Len: 1065 Check: 1174 Weight: 1.00 // 1 50 ENSP00000337383/1-1036 MKMASTRCKL ARYLEDLEDV DLKKFKMHLE DYPPQKGCIP LPRGQTEKAD BACU004881/1-942 --MASVRCKL ARYLEDLEDV DFKKFKMHLE DYPSQKGCTS LPRGQTEKAD ENSBTAP00000001675/1-1031 MRMVSVRCKL ARYLEDLEDI DFKKFKMHLE DYPSQKGCTS IPRGQTEKAD bmy_20704T0/1-860 MSMASVRCKL ARYLEDLEDV DFKKFKMHLE DYPSQKGCTS LPRGQTEKAD ENSTTRP00000012884/1-1039 MSMASVRCKL ARYLEDLEDV DFKKFKMHLE DYPSQKGCTS LPRGQTEKAD 51 100 ENSP00000337383/1-1036 HVDLATLMID FNGEEKAWAM AVWIFAAINR RDLYEKAKRD EPKWGSDNAR BACU004881/1-942 HVDLATLMID FNGEEKAWAM AKWIFAAINR RDLYEKAKRD EPEW--DNAN ENSBTAP00000001675/1-1031 HVDLATLMID FNGEEKAWAM AKWIFAAINR RDLYEKAKRE EPEW--ENAN bmy_20704T0/1-860 HVDLATLMID FNGEEKAWAM A--------- ---------- ---------- ENSTTRP00000012884/1-1039 HVDIATLMID FNGEEKAWAM AKWIFAAINR RDLYEKAKRD EPEWVSDNAN 101 150 ENSP00000337383/1-1036 VSNPTVICQE DSIEEEWMGL LEYLSRISIC KMKKDYRKKY RKYVRSRFQC BACU004881/1-942 VS---VISQE ESLEEEWMGL LGYLSRISIC KKKKDYCKKY RKYVRSRFQC ENSBTAP00000001675/1-1031 IS---VLSQE ESLEEEWMGL LGYLSRISIC RKKKDYCKKY RKYVRSKFQC bmy_20704T0/1-860 -------NQE ESLEEEWMGL LGYLSRISIC KKKKDYCKKY RKYVRSRFQC ENSTTRP00000012884/1-1039 VS---VISQE ESLEEEWMGL LGYLSRISIC KKKKDYCKKY RKYVRSRFQC 151 200 ENSP00000337383/1-1036 IEDRN----- ---------- -----ARLGE SVSLNKRYTR LRLIKEHRSQ BACU004881/1-942 IKDRNXXXXX XXXXXXXXXX XXXXXARLGE SVNLNKRFTR LRLIKEHRSQ ENSBTAP00000001675/1-1031 IKDRN----- ---------- -----ARLGE SVNLNKRFTR LRLIKEHRSQ bmy_20704T0/1-860 IKDRN----- ---------- -----ARLGE SVNLNKRFTR LRLIKEHRSQ ENSTTRP00000012884/1-1039 IKDRN----- ---------- -----ARLGE SVNLNKRFTR LRLIKEHRSQ 201 250 ENSP00000337383/1-1036 QEREQELLAI GKT--KTCES PVSPIKMELL FDPDDEHSEP VHTVVFQGAA BACU004881/1-942 QEREHELLAI GRTSAKMQDG PVSSMNLELL FDPEDQHSEP VHTVVFQGAA ENSBTAP00000001675/1-1031 QEREHELLAI GRTWAKIQDS PVSSVNLELL FDPEDQHSEP VHTVVFQGAA bmy_20704T0/1-860 QEREHELLAI GRTSAKMQDS PVSSMNLELL FDPEDQHSEP VHTVVFQGAA ENSTTRP00000012884/1-1039 QEREHELLAI GRTSAKMQDG PVSSVNLELL FDPEDQHSEP VHTVVFQGAA 251 300 ENSP00000337383/1-1036 GIGKTILARK MMLDWASGTL YQDRFDYLFY IHCREVSLVT QRSLGDLIMS BACU004881/1-942 GIGKTILARK IMLDWASGEL YQDKFDYLFY IHCREVSLGM QRSLGDLIAS ENSBTAP00000001675/1-1031 GIGKTILARK IMLDWASEKL YQDRFDYLFY IHCREVSLGT QRSLGDLIAS bmy_20704T0/1-860 GIGKTILARK IMLDWASGEL YQDKFDYLFY IHCREVSLGM QRSLGDLIAS ENSTTRP00000012884/1-1039 GIGKTILARK IMLDWASEEL YQDKFDYLFY IHCREVSLGM QRSLGDLIAS 301 350 ENSP00000337383/1-1036 CCPDPNPPIH KIVRKPSRIL FLMDGFDELQ GAFDEHIGPL CTDWQKAERG BACU004881/1-942 CCPGPNPPIG KIVSKPSRIL FLMDGFDELQ GAFDEHTEAL CTNWQKVERG ENSBTAP00000001675/1-1031 CCPGPNPPIG KIVSKPSRIL FLMDGFDELQ GAFDEHTEAL CTNWRKVERG bmy_20704T0/1-860 CCPGPNPPIG KIVSKPSRIL FLMDGFDELQ GAFDEHTEAL CTNWQKVERG ENSTTRP00000012884/1-1039 CCPGPNPPIG KIVSKPSRIL FLMDGFDELQ GAFDERTEAL CTNWQKVERG 351 400 ENSP00000337383/1-1036 DILLSSLIRK KLLPEASLLI TTRPVALEKL QHLLDHPRHV EILGFSEAKR BACU004881/1-942 DILLSSLIRK RLLPEASLLI TTRPVALEKL QHLLGRARHV EILGFSEVRK ENSBTAP00000001675/1-1031 DILLSSLIRK RLLPEASLLI TTRPVALEKL QHLLGQARHV EILGFSEARR bmy_20704T0/1-860 DILLSSLIRK RLLPEASLLI TTRPVALEKL QHLLGRARHV EILGFSEVRK ENSTTRP00000012884/1-1039 DILLSSLIRK RLLPEASLLI TTRPVALEKL QHLLGRARHV EILGFSEVKK 401 450 ENSP00000337383/1-1036 KEYFFKYFSD EAQARAAFSL IQENEVLFTM CFIPLVCWIV CTGLKQQMES BACU004881/1-942 KEYFFKYFSD EQQAREAFRL IQENEILFTM CFIPLVCWIV CTGLKQQMDS ENSBTAP00000001675/1-1031 KEYFLKYFSD EQQAREAFRL IQENEILFTM CFIPLVCWIV CTGLKQQMDS bmy_20704T0/1-860 KEYFFKYFSD EQQAREAFRL IQENEILFTM CFIPLVCWIV CTGLKQQMDS ENSTTRP00000012884/1-1039 KEYFFKYFSD EQQAREAFRL IQENEILFTM CFIPLVCWIV CTGLKQQMDS 451 500 ENSP00000337383/1-1036 GKSLAQTSKT TTAVYVFFLS SLLQPRGGSQ EHGLCAHLWG LCSLAADGIW BACU004881/1-942 GKSLARTSKT TTAVYIFFLS SLLQSQGGNQ EHHNSATLWG LCSLAADGIW ENSBTAP00000001675/1-1031 GKSLARTSKT TTAVYIFFLS SLLQSQGGSQ ENHNSATLWG LCSLAADGIW bmy_20704T0/1-860 GKSLARTSKT TTAVYIFFLS SLLQSQGGSQ EHHNSATLWG LCSLAADGIW ENSTTRP00000012884/1-1039 GKSLARTSKT TTAVYIFFLS SLLQSQGGSQ EHHNSATLWG LCSLAADGIW 501 550 ENSP00000337383/1-1036 NQKILFEESD LRNHGLQKAD VSAFLRMNLF QKEVDCEKFY SFIHMTFQEF BACU004881/1-942 NQKILFEECD LRNHGLQKAD VSAFLRMNLF QKEVDCEKFY SFIHMTFQEF ENSBTAP00000001675/1-1031 NQKILFQECD LRNHGLQKAD VSAFLRMNLF QKEVDCEKFY SFIHMTFQEF bmy_20704T0/1-860 NQKILFEECD LRNHGLQKAD VSAFLRMNLF QKEVDCEKFY SFIHMTFQEF ENSTTRP00000012884/1-1039 NQKILFEECD LRNHGLQKAD VSAFLRMNLF QKEVDCEKFY SFIHMTFQEF 551 600 ENSP00000337383/1-1036 FAAMYYLLEE EKEGRT-NVP GSRLKLPSRD VTVLLENYGK FEKGYLIFVV BACU004881/1-942 FAAMYYLLEE ENQGEMRSMQ QSSLKLPNRD VTVLLENYGK FEKGYLIFVV ENSBTAP00000001675/1-1031 FAAMYYLLEE DNHGEMRNTP QACSKLPNRD VKVLLENYGK FEKGYLIFVV bmy_20704T0/1-860 FAAMYYLLEE ENQGEMSNTQ QSSLKLPNRD VTVLLENYGK FEKGYLIFVV ENSTTRP00000012884/1-1039 FAAMYYLLEE ENQGETRNMQ QSSLKLPNRD VTVLLENYGK FEKGYLIFVV 601 650 ENSP00000337383/1-1036 RFLFGLVNQE RTSYLEKKLS CKISQQIRLE LLKWIEVKAK AKKLQIQPSQ BACU004881/1-942 RFLFGLINQE RTSYLEKKLS CKISQKIRLE LLKWIEAKAE AKMLQIEPSQ ENSBTAP00000001675/1-1031 RFLFGLINQE RTSYLEKKLS CKISQKIRLE LLKWIEAKAN AKTLQIEPSQ bmy_20704T0/1-860 RFLFGLINQE RTSYLEKKLS CKISQKIRLE LLKWIEAKAE AKMLQIEPSQ ENSTTRP00000012884/1-1039 RFLFGLINQE RTSYLEKKLS CKISQKIRLE LLKWIEAKAK AKMLQIEPSQ 651 700 ENSP00000337383/1-1036 LELFYCLYEM QEEDFVQRAM DYFPKIEINL STRMDHMVSS FCIENCHRVE BACU004881/1-942 LELFYCLYEM QEEDFVQRAM GYFPKIEIKL STRMDHVVSS FCIENCRHVE ENSBTAP00000001675/1-1031 LELFYCLYEM QEEDFVQRAM SHFPKIEIKL STRMDHVVSS FCIENCRHVE bmy_20704T0/1-860 LELFYCLYEM QEEDFVQRAM GYFPKIEIKL STRMDHVVSS FCIENCRHVE ENSTTRP00000012884/1-1039 LELFYCLYEM QEEDFVQRAM GYFPKIEIKL STRMDHVVSS FCIENCHHME 701 750 ENSP00000337383/1-1036 SLSLGFLHNM PK------EE EEEEKEGRHL DMVQCVLPSS SHAACSHGLV BACU004881/1-942 SLSLRLLHNS SKEEEEEEEE EEKEEEVQHS DVNDCVL-SD PHVAYSQRLV ENSBTAP00000001675/1-1031 SLSLRLLHNS PK-------E EEEEEEVRHS HMDRSVL-SD FEVAYSQGLV bmy_20704T0/1-860 SLSLRLLHNS SKEEEEEEEE EEKEEEVQHS DVNHCVL-SD PHVAYSQRLV ENSTTRP00000012884/1-1039 SLSLRLLHNS SK-EEEEEEE EEKEEEVQHS DVNDCVL-SD PHVAYSQRLV 751 800 ENSP00000337383/1-1036 NSHLTSSFCR GLFSVLSTSQ SLTELDLSDN SLGDPGMRVL CETLQHPGCN BACU004881/1-942 N-YLTSSICR GIFSVLSNNW NLTELNLSGN TLGDPGMKVL CETLHQPGCN ENSBTAP00000001675/1-1031 N-YLTSSICR GIFSVLSNNW NLTELNLSGN TLGDPGMNVL CETLQQPGCN bmy_20704T0/1-860 N-YLTSSICR GIFSVLSNNW NLTELNLSGN SLGDPGMKVL CETLHQPGCN ENSTTRP00000012884/1-1039 N-YLTSSICR GIFSVLSDNW NLTELNLSGN TLGDPGMKVL CETLQQPGCN 801 850 ENSP00000337383/1-1036 IRRLWLGRCG LSHECCFDIS LVLSSNQKLV ELDLSDNALG DFGIRLLCVG BACU004881/1-942 IRRLWL---- ---------- ---------- ---------- ---------- ENSBTAP00000001675/1-1031 IRRLWLGQCC LSHQCCFNIS SVLSNNQKLV ELDLSHNALG DFGIRLLCVG bmy_20704T0/1-860 IRRLWLGQCC LSHQCCFNIS SVLSNNQKLV ELDLSHNALG DFGIRLLCVG ENSTTRP00000012884/1-1039 IRRLWLGQCC LSHQCCFNIS SVLSNNQKLV ELDLSHNALG DFGIRLLCVG 851 900 ENSP00000337383/1-1036 LKHLLCNLKK LWLVSCCLTS ACCQDLASVL STSHSLTRLY VGENALGDSG BACU004881/1-942 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001675/1-1031 LRHLFCNLKK LWLVSCCLTS ASCEDLASVL STNHSLTRLY LGENALGDSG bmy_20704T0/1-860 LRHLFCNLKK LWLVSCC--- ---------- ---------- ---------- ENSTTRP00000012884/1-1039 LRHLFCNLKK LWLVSCCLTS VCCDDLASVL STNHSLTRLY LGENALGDSG 901 950 ENSP00000337383/1-1036 VAILCEKAKN PQCNLQKLGL VNSGLTSVCC SALSSVLSTN QNLTHLYLRG BACU004881/1-942 ---------- ---------- VNSGITSGGC LALCSVLNTN QNLTHLYLRG ENSBTAP00000001675/1-1031 VGILCEKVKN PHCNLQKLGL VNSGLTSGCC PALSSVLSTN QNLTHLYLQG bmy_20704T0/1-860 ---------- ---------- ----LTSVCC DDLASVLSTN HSLTRLYLGE ENSTTRP00000012884/1-1039 VGILCEKAKN PQCNLQKLGL VNSGITSGGC VPLCSVLSTN KNLTHLYLRG 951 1000 ENSP00000337383/1-1036 NTLGDKGIKL LCEGLLHPDC KLQVLELDNC NLTSHCCWDL STLLTSSQSL BACU004881/1-942 NALGDVGIKL LCKGLLHAHC KLQVLELDNC SLTSHCCWGL STLLTSNQSL ENSBTAP00000001675/1-1031 NALGDMGVKL LCEGLLHRNC KLQVLELDNC SLTSHCCWDL STLLTSNQSL bmy_20704T0/1-860 NALGDSGVGI LCEKAKNPQC NLQKL----- ---------- ---------- ENSTTRP00000012884/1-1039 NALGDVGVKL LCKGLLHAHC KLQVLELDNC SLTSHCCWGL STLLTSNQSL 1001 1050 ENSP00000337383/1-1036 RKLSLGNNDL GDLGVMMFCE VLKQQSCLLQ NLGLSEMYFN YETKSALETL BACU004881/1-942 RKLSLGNNDL GDLGVMLLCE VLKQQGCLLK SLKLCGMYFN YDTKRALETL ENSBTAP00000001675/1-1031 RKLCLGNNDL GDLGVMLLCE VLKQQGCLLK SLRLCEMYFN YDTKRALETL bmy_20704T0/1-860 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012884/1-1039 RKLSLGNNDL GDLGVMLLCE VLKQQGCLLK CLKLCGMYFN YDTKRALETL 1051 1100 ENSP00000337383/1-1036 QEEKPELTVV FEPSW BACU004881/1-942 QEEKPELTIV FEPAR ENSBTAP00000001675/1-1031 QEEKPELTIV FEPSR bmy_20704T0/1-860 ---------- ----- ENSTTRP00000012884/1-1039 QEEKPELTIV FEPAR