KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:15:11 2014 Check: 00 .. Name: ENSP00000294053/1-707 Len: 769 Check: 3484 Weight: 1.00 Name: bmy_03671T0/1-567 Len: 769 Check: 1549 Weight: 1.00 Name: ENSTTRP00000009464/1-707 Len: 769 Check: 8901 Weight: 1.00 Name: ENSBTAP00000001687/1-677 Len: 769 Check: 1851 Weight: 1.00 Name: BACU019645/1-717 Len: 769 Check: 6000 Weight: 1.00 // 1 50 ENSP00000294053/1-707 MLGSLVLRRK ALAPRLLLRL LRSPTLRGHG GASGRNVTTG SLGEPQWLRV bmy_03671T0/1-567 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009464/1-707 MLASLVLRRT APAPRLLLQL LRSPSLRSRG SATDRSVTTG GRGEPQRLRA ENSBTAP00000001687/1-677 MLGSLVSKRT APAPRLLLQL LRSPSLRSHE SATGQSVTTG GRGEPQWLRA BACU019645/1-717 MLGSLVLRRT APAPRLLLQL LRSPSLRSRG SATDRSVTTG GRGEPQWLRA 51 100 ENSP00000294053/1-707 ATGGRPGTSP ALFSGRGAAT GGRQGGRFDT KCLAAATWGR LPGPEETLPG bmy_03671T0/1-567 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009464/1-707 AIGGRPGTSP ALLTREGTAT GGRQRGGTET PCLAAATWGR LPSPEDTLPG ENSBTAP00000001687/1-677 AVGGRHGTSP ALLTGGGAAT GGRQRGRTET PCLAAATWGR LPSPEDTLPG BACU019645/1-717 AIGGRPGTSP ALLTRGGTAT GGSQRGGTET PCLAAATWGR LPGPEDTLPG 101 150 ENSP00000294053/1-707 QDSWNGVPSR AGLGMCALAA ALVVHCYSKS PSNK------ -DAALLEAAR bmy_03671T0/1-567 ---------- --MGVWALAT VLVVHCYSKS PSNKGDYRDS MDAALMEAVR ENSTTRP00000009464/1-707 QDSWNGALNR AGMGVWALAT VLVVHCYSKS PSNK------ -DAALVEAVR ENSBTAP00000001687/1-677 QDSWNGVLSR AGLGVWALAT ALVVHCYSKS PSSK------ -DAALMEAAR BACU019645/1-717 QDSWNGVLIR TGMGVWALAT VLVVHCYSKS PSNK------ -DAALMEAVR 151 200 ENSP00000294053/1-707 ANNMQEVSRL LSEGADVNAK HRLGWTALMV AAINRNNSVV QVLLAAGADP bmy_03671T0/1-567 ANNVQEVSRL LSEGADVNAR HRLGWTALMV AAINRNDSET LLLF------ ENSTTRP00000009464/1-707 ANNVQEVNRL LSEGADVNAR HKLGWTALMV AAINRNDSVV QVLLAAGADP ENSBTAP00000001687/1-677 ANNVQEVSRL LSEGADVNAR HRLGWTALMV AAINRNDSVV QVLLAAGADP BACU019645/1-717 ANNVQEVSRL LSEGADVNAR HRLGWTALMV AAINRNDSVV QVLLAAGADP 201 250 ENSP00000294053/1-707 NLGDDFSSVY KTAKEQGIHS LEDGGQDGAS RHITNQWTSA LEFRRWLGLP bmy_03671T0/1-567 ---DIWHCSS KKPAQLAHYS IFNSCQ---- ---------- ---------- ENSTTRP00000009464/1-707 NLGDDFSSVY KTAKEQGIHS LEDGGQDDAS WYITNQWTSA LEFRRRLGVP ENSBTAP00000001687/1-677 NLGDDFSSVY KTAKDQGIHS LE-------- ---------- ---------- BACU019645/1-717 NLGDDFSSVY KTAKEQGIHS LEDGGQDDAS WYITNQWTSA LEFRRWLGVP 251 300 ENSP00000294053/1-707 AG-------- --VLITREDD FNNRLNNRAS FKGCTALHYA VLADDYRTVK bmy_03671T0/1-567 ---------- --VLVTREDD FNNRLNNRAS FKGCTALHYA VLADDYRTVK ENSTTRP00000009464/1-707 AS-------- --VLVTREDD FSNRLNNRAS FKGCTALHYA VLADDYRTVR ENSBTAP00000001687/1-677 ---------- --VLVTREDD FNNRLNNRAS FKGCTALHYA VLADDYRTVK BACU019645/1-717 AAVMGLLSIK FLLLVTREDD FNNRLNNRAS FKGCTALHYA VLADDYRTVK 301 350 ENSP00000294053/1-707 ELLDGGANPL QRNEMGHTPL DYAREGEVMK LLRTSEAKYQ EKQRKREAEE bmy_03671T0/1-567 ELLDGGANPL QRNEMGHTPL DYAREGEVMK LLRTSEAKYQ EKQWKREAEE ENSTTRP00000009464/1-707 ELLGGXXXXX XXXXXXXXXX XXXREGEVMK LLRTSESKYQ EKQRKREAEE ENSBTAP00000001687/1-677 ELLDGGANPL QRNEMGHTPL DYAREGEVMK LLRTSETKYQ EKQRKREAEE BACU019645/1-717 ELLDGGANPL QRNEMGHTPL DYAREGEVMK LLRTSEAKYQ EKQRKREAEE 351 400 ENSP00000294053/1-707 RRRFPLEQRL KEHIIGQESA IATVGA---- ---------- ---------- bmy_03671T0/1-567 RRRFPLEQRL KEHIIGQESA IATVGAVIII LPFVSLIYLP PSLSSLLMCL ENSTTRP00000009464/1-707 RRRFPLEQRL KEHIIGQESA IATVGA---- ---------- ---------- ENSBTAP00000001687/1-677 RRRFPLEQRL KEHIIGQESA IATVGA---- ---------- ---------- BACU019645/1-717 RRRFPLEQRL KEHIIGQESA IATVGA---- ---------- ---------- 401 450 ENSP00000294053/1-707 --AIRRKENG WYDEEHPLVF LFLGSSGIGK TELAKQTAKY MHKDAKKGFI bmy_03671T0/1-567 AIAIRRKENG WYDEEHPLVF LFLGSSGIGK TELAKQTAKY MHKDAKKGFI ENSTTRP00000009464/1-707 --AIRRKENG WYDEEHPLVF LFLGSSGIGK TELAKQTAKY MHKDAKKGFI ENSBTAP00000001687/1-677 --AIRRKENG WYDEEHPLVF LFLGSSGIGK TELAKQTAKY MHKDAKKGFI BACU019645/1-717 --AIRRKENG WYDEEHPLVF LFLGSSGIGK TELAKQTAKY MHRDAKKGFI 451 500 ENSP00000294053/1-707 RLDMSEFQER HEVAKFIGSP PGYVGHEEGG QLTKKLKQCP NAVVLFDEVD bmy_03671T0/1-567 RLDMSEFQER HEVAKFIGSP PGYIGHEEGG QLTKKLKQCP NAVVLFDEVD ENSTTRP00000009464/1-707 RLDMSEFQER HEVAKFIGSP PGYIGHEEGG QLTKKLKQCP NAVVLFDEVD ENSBTAP00000001687/1-677 RLDMSEFQER HEVAKFIGSP PGYIGHEEGG QLTKKLKQCP NAVVLFDEVD BACU019645/1-717 RLDMSEFQER HEVAKFIGSP PGYIGHEEGG QLTKKLKQCP NAVVLFDEVD 501 550 ENSP00000294053/1-707 KAHPDVLTIM LQLFDE---- ---------- -----GRLTD GKGKTIDCKD bmy_03671T0/1-567 KAHPDVLTIM LQLFDEVQVS LGRDGVGDTF TVPSQGRLTD GKGKTIDCKD ENSTTRP00000009464/1-707 KAHPDVLTIM LQLFDE---- ---------- -----GRLTD GKGKTIDCKD ENSBTAP00000001687/1-677 KAHPDVLTIM LQLFDE---- ---------- -----GRLTD GKGKTIDCKD BACU019645/1-717 KAHPDVLTIM LQLFDE---- ---------- -----GRLTD GKGKTIDCKD 551 600 ENSP00000294053/1-707 AIFIMTSNVA SDEIAQHALQ LRQEALEMSR NRIAENLGDV QISDKITISK bmy_03671T0/1-567 AIFIMTSNVG SDEIAQHALQ LRQEALEMSH NRIAENLGDV QTSDKITISK ENSTTRP00000009464/1-707 AIFIMTSNVG SDEIAQHALQ LRQEALEMSH NRIAENLGDV QTSDKITISK ENSBTAP00000001687/1-677 AIFIMTSNVA SDEIAQHALQ LRQEALEMSR NRIAENLGDV QISDKITISK BACU019645/1-717 AIFIMTSNVG SDEIAQHALQ LRQEALEISH NRIAENLGDV QTSDKITISK 601 650 ENSP00000294053/1-707 NFKENVIRPI LKAHFRRDEF LGRINEIVYF LPFCHSELIQ LVNKELNFWA bmy_03671T0/1-567 NFKENVIRPI LKAHFRRDEF LGRINEIVYF LPFCHSELIQ LVNKELNFWA ENSTTRP00000009464/1-707 NFKENVIRPI LKAHFRRDEF LGRINEIVYF LPFCHSELIQ LVNKELNFWA ENSBTAP00000001687/1-677 NFKENVIRPI LKAHFRRDEF LGRINEIVYF LPFCHSELIQ LVNKELNFWA BACU019645/1-717 NFKENVIRPI LKAHFRRDEF LGRINEIVYF LPFCHSELIQ LVNKELNFWA 651 700 ENSP00000294053/1-707 KRAKQRHNIT LLWDREVADV LVDGYNVHYG ARSIKHEVER RVVNQLAAAY bmy_03671T0/1-567 KRAKQRHNIT LLWDREVADV LVDGYNVHYG ARSIKHE--- ---------- ENSTTRP00000009464/1-707 KRAKQRHNIT LLWDREVADV LVDGYNVHYG ARSIKHEVER RVVNQLAAAY ENSBTAP00000001687/1-677 KRAKQRHNIT LLWDREVADV LVEGYNVHYG ARSIKHEVER RVVNQLAAAY BACU019645/1-717 KRAKQRHNIT LLWDREVADV LVDGYNVHYG ARSIKHEVER RVVNQLAAAY 701 750 ENSP00000294053/1-707 EQDLLPGGCT LRITVEDSDK QLLKSPELPS PQAEKRLPKL RLEIIDKDSK bmy_03671T0/1-567 ---------- ---------- ---------- --AEKRPPKL RLEIIDKDSK ENSTTRP00000009464/1-707 EQDLLPGGCT LRITVEDSDK QLLKSPELPS PQAEKRPPKL RLEIIDKDSK ENSBTAP00000001687/1-677 EQDLLPGGCT LRITVEDSDK QLLRSPELSS SQAERRPPKL RLEIIDKDSK BACU019645/1-717 EQDLLPGGCT LRITVEDSDK QLLKSPELPS PQADKRPPKL RLEIIDKDSK 751 800 ENSP00000294053/1-707 TRRLDIRAPL HPEKVCNTI bmy_03671T0/1-567 THRLDIQAPL NPEKVCHTL ENSTTRP00000009464/1-707 THRLDIQAPL NPEKVCHTL ENSBTAP00000001687/1-677 THKLDIQAPL HPEKVCHTL BACU019645/1-717 THRLDIQAPL NPEKVCHTL