KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:15:12 2014 Check: 00 .. Name: ENSP00000416696/1-1423 Len: 1457 Check: 9545 Weight: 1.00 Name: ENSBTAP00000001692/1-1422 Len: 1457 Check: 1772 Weight: 1.00 Name: bmy_03027T0/1-1105 Len: 1457 Check: 9715 Weight: 1.00 Name: BACU009454/1-1342 Len: 1457 Check: 5059 Weight: 1.00 Name: ENSTTRP00000011439/1-1340 Len: 1457 Check: 876 Weight: 1.00 // 1 50 ENSP00000416696/1-1423 MYFLSGWPKR LLCPLGSPAE APFHVQSDPQ RAFFAVLAAA RLSIWYSRPS ENSBTAP00000001692/1-1422 MYFLSGWPKR LLCPLGSPAE APFHVQSDPQ RTFFAVLAPA RLSIWYSRPS bmy_03027T0/1-1105 ---------- ---------- ---------- ---------- ---------- BACU009454/1-1342 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011439/1-1340 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000416696/1-1423 VLIVTYKEPA KSSTQFGSYK QAEWRPDSTM IAVSTANGYI LFFHITSTRG ENSBTAP00000001692/1-1422 VLIVTYKEPA KSSSQFGSYK QAEWRPDSTM IAVSTANGYI LFFHITSTRG bmy_03027T0/1-1105 ---------- ---------- ---------- ---------- ---------- BACU009454/1-1342 ---------- ---------- ---------M IAVSTANGYI LFFHITSTRG ENSTTRP00000011439/1-1340 ---------- ---------- ---------M IAVSTANGYI LFFHITSTRG 101 150 ENSP00000416696/1-1423 DKYLYEPVYP KGSPQMKGTP HFKEEQCAPA LNLEMRKILD LQAPIMSLQS ENSBTAP00000001692/1-1422 DKYLYEPVYP KGSPQMKGTP HFKEEQCAPA LNLEMKKILD LQAPIMSLQS bmy_03027T0/1-1105 ---------- ---------- ---------- ---------- ---------- BACU009454/1-1342 DKYLYEPVYP KGSPQVKGTP HFKEEQCAPA LNLEMRKILD LQAPIMSLQS ENSTTRP00000011439/1-1340 DKYLYEPVYP KGSPQVKGTP HFKEEQCAPA LNLEMRKILD LQAPIMSLQS 151 200 ENSP00000416696/1-1423 VLEDLLVATS DGLLHLIHWE GMTNGRKAIN LCTVPFSVDL QSSRVGSFLG ENSBTAP00000001692/1-1422 VLEDLLVATS DGLLHLIHWE GMTNGRKAIN LCTVPFSVDL QSSRAGSFLG bmy_03027T0/1-1105 ---------- ---------- ---------- ---------- ---------- BACU009454/1-1342 VLEDLLVATS DGLLHLIHWE GMTNGRKAIN LCTVPFSVDL QSSRAGSFLG ENSTTRP00000011439/1-1340 VLEDLLVATS DGLLHLIHWE GMTNGRKAIN LCTVPFSVDL QSSRAGSFLG 201 250 ENSP00000416696/1-1423 FTDVHIRDME YCATLDGFAV VFNDGKVGFI TPVSSRFTAE QLHGVWPQDV ENSBTAP00000001692/1-1422 FADVHIRDME YCATLDGFAV VFNDGKVGFI TPVSSRFTAE QLHGVWPQDV bmy_03027T0/1-1105 ---------- ---------- ----MKQSFI FNSSHNFLT- ---------- BACU009454/1-1342 FADVHIRDME YCATLDGFAV VFNDGKVGFI TPVSSRFTAE QLHGVWPQDV ENSTTRP00000011439/1-1340 FEDVHIRDME YCATLDGFAV VFNDGKVGFI TPVSSRFTAE QLHGVWPQDV 251 300 ENSP00000416696/1-1423 VDGTCVAVNN KYRLMAFGCV SGSVQVYTID NSTGAMLLSH KLELTAKQYP ENSBTAP00000001692/1-1422 VDGTCVAVNN KYRLMAFGCA SGSVQVYTID NTTGAMQLSH KLELTAKQYP bmy_03027T0/1-1105 ---------- ---------- ---------- ---------- ---------- BACU009454/1-1342 VDGTCVAVNN KYRLMAFGCA SGSVQVYTID NTTGAMLLSH KLELTAKQYP ENSTTRP00000011439/1-1340 VDGTCVAVNN KYRLMAFGCA SGSVQVYTID NTTGAMLLSH KLELTAKQYP 301 350 ENSP00000416696/1-1423 DIWNKTGAVK LMRWSPDNSV VIVTWEYGGL SLWSVFGAQL ICTLGGDFAY ENSBTAP00000001692/1-1422 DIWNKTGAVK LVRWSPDNSV VIVTWEYGGL SLWSVFGAQL ICTLGGDFAY bmy_03027T0/1-1105 DIWNKTGAVK LVRWSPDNSV VIVTWEYGGL SLWSVFGAQL ICTLGGDFAY BACU009454/1-1342 DIWNKTGAVK LVRWSPDNSV VIVTWEYGGL SLWSVFGAQL ICTLGGDFAY ENSTTRP00000011439/1-1340 DIWNKTGAVK LVRWSPDNSV VIVTWEYGGL SLWSVFGAQL ICTLGGDFAY 351 400 ENSP00000416696/1-1423 RSDGTKKDPL KINSMSWGAE GYHLWVISGF GSQNTEIESD LRSVVKQPSI ENSBTAP00000001692/1-1422 RSDGTKKDPL KINSMSWGAE GYHLWVISGF GSQNTENESD SKSIVKQPGI bmy_03027T0/1-1105 RSDGTKKDPL KINSMSWGAE GYHLWVISGF GSQNTENESD SKSIVKQPSI BACU009454/1-1342 RSDGTKKDPL KINSMSWGAE GYHLWVISGF GSQNTENESD SKSIVKQPSI ENSTTRP00000011439/1-1340 RSDGTKKDPL KINSMSWGAE GYHLWVISGF GSQNTENESD SKSIVKQPSI 401 450 ENSP00000416696/1-1423 LLFQFIKSVL TVNPCMSNQE QVLLQGEDRL YLNCGEASQT QNPRSSSTHS ENSBTAP00000001692/1-1422 LLFQFIKSAL TVNPCMSNQE QVLLQGEDRL YLNCGEASQS QNPRSSSAHS bmy_03027T0/1-1105 LLFQFLKSAL TVNPCMSNQE QVLLQGEDRL YLNCGEASQT QNPRSTSAHS BACU009454/1-1342 LLFQFLKSAL TVNPCMSNQE QVLLQGEDRL YLNCGEASQT QNPRSTSARS ENSTTRP00000011439/1-1340 LLFQFLKSAL TVNPCMSNQE QVLLQGEDRL YLNCGEASQT QNPRSTSAHS 451 500 ENSP00000416696/1-1423 EHKPSREKSP FADGGLESQG LSTLLGHRHW HVVQ------ ---------- ENSBTAP00000001692/1-1422 DHRTRREKSP FAGGGLESQS LSTLLGHRHW HVVQ------ ---------- bmy_03027T0/1-1105 DHKPSQEKSP FADGSLESQS LSTLLGHRHW HVVQIIIKLV VSFSNSDKLA BACU009454/1-1342 DHKPSQEKSP FADGSLESQS LSTLLGHRHW HVVQ------ ---------- ENSTTRP00000011439/1-1340 DHKPSQEKSP FADGSLESQS LSTLLGHRHW HVVQ------ ---------- 501 550 ENSP00000416696/1-1423 ---------- -------ISS TYLESNWPIR FSAIDKLGQN IAVVGKFGFA ENSBTAP00000001692/1-1422 ---------- -------ISS TYLESNWPIR FSAIDKLGQN IAVVGKFGFA bmy_03027T0/1-1105 FNIEINSEFR YQIKLIWISS TYLESNWPIR FSAIDKLGQN IAVVGKFGFA BACU009454/1-1342 ---------- -------ISS TYLESNWPIR FSAIDKLGQN IAVVGKFGFA ENSTTRP00000011439/1-1340 ---------- -------ISS TYLESNWPIR FSAIDKLGQN IAVVGKFGFA 551 600 ENSP00000416696/1-1423 HYSLLTKKWK LFGNITQEQN MIVTGGLAWW NDFMVLACYN INDRQEELRV ENSBTAP00000001692/1-1422 HYSLLTKKWK LFGNITQEQN MIVTGGLAWW NDFIVLACYN ISDRQEELRV bmy_03027T0/1-1105 HYSLLTKKWK LFGNITQEQN MIVTGGLAWW NDFIVLACYN ISDHQEELRV BACU009454/1-1342 HYSLLTKKWK LFGNITQEQN MIVTGGLAWW NDFIVLACYN ISDHQEELRV ENSTTRP00000011439/1-1340 HYSLLTKKWK LFGNITQEQN MIVTGGLAWW NDFIVLACYN ISDHQEELRV 601 650 ENSP00000416696/1-1423 YLRTSNLDNA FAHVTKAQAE TLLLSVFQDM VIVFRADCSI CLYSIERKSD ENSBTAP00000001692/1-1422 YLRTSNLDNA FAHVTKTQAE TLLLSVFRDM VIVFRADCSI CLYSIERKSD bmy_03027T0/1-1105 YLRTSNLDNA FAHVTKTQAE TLLLSVFRDM VIVFRADCSI CLYSIERKPD BACU009454/1-1342 YLRTSNLDNA FAHVTKTQAE TLLLSVFRDM VIVFRADCSI CLYSIERKPD ENSTTRP00000011439/1-1340 YLRTSNLDNA FAHVTKTQAE TLLLSVFRDM VIVFRADCSI CLYSIERKSD 651 700 ENSP00000416696/1-1423 GPNTTAGIQV LQEVSMSRYI PHPFLVVSVT LTSVSTENGI TLKMPQQARG ENSBTAP00000001692/1-1422 GPN-AAGIQV LQEVSMSRYI PHPFLVVSVT LTSVSTENGI TLKMPQQARD bmy_03027T0/1-1105 GPN-TAGIQV LQEVSMSRYI PHPFLVVSVT LTSVSTENGI TLKMPQQARD BACU009454/1-1342 GPN-TAGIQV LQEVSMSRYI PHPFLVVSVT LTSVSTENGI TLKMPQQARD ENSTTRP00000011439/1-1340 GPN-TAGIQV LQEVSMSRYI PHPFLVVSVT LTSVSTENGI TLKMPQQARD 701 750 ENSP00000416696/1-1423 AESIMLNLAG QLIMMQRDRS GPQIREKDSN PNNQRKLLPF CPPVVLAQSV ENSBTAP00000001692/1-1422 AESIMLNLAG QLIMMQRDRS GPQIREKDSN P-NQRKLLPF CPPVVLAQSV bmy_03027T0/1-1105 AESIMLNLAG QLIMMQRDRS GPQIREKDSN P-SQRKLLPF CPPVVLAQSV BACU009454/1-1342 AESIMLNLAG QLIMMQRDRS GPQIREKDSN P-SQRKLLPF CPPVVLAQSV ENSTTRP00000011439/1-1340 AESIMLNLAG QLIMMQRDRS GPQIREKDSN T-NQRKLLPF CPPVVLAQSV 751 800 ENSP00000416696/1-1423 ENVWTTCRAN KQKRHLLEAL WLSCGGAGMK VWLPLFPRDH RKPHSFLSQR ENSBTAP00000001692/1-1422 ENVWTTCRAN KQKRHLLEAL WLSCGGAGMK VWLPLFPRDH RKPHSFLSQR bmy_03027T0/1-1105 ENVWTTCRAN KQKRHLLEAL WLSCGGSGMK VWLPLFPRDH RKPHSFLSQR BACU009454/1-1342 ENVWTTCRAN KQKRHLLEAL WLSCGGSGMK VWLPLFPRDH RKPHSFLSQR ENSTTRP00000011439/1-1340 ENVWTTCRAN KQKRHLLEAL WLSCGGSGMK VWLPLFPRDH RKP-SFLSQR 801 850 ENSP00000416696/1-1423 IMLPFHINIY PLAVLFEDAL VLGAVNDTLL YDSLYTRNNA REQLEVLFPF ENSBTAP00000001692/1-1422 IMLPFHINIY PLAVLFEDAL VLGAVNDTLL YDSLYSRNSA REQLEVLFPF bmy_03027T0/1-1105 IMLPFHINIY PLAVLFEDAL VLGAVNDTVL YDSLYTRNSA REQLEVLFPF BACU009454/1-1342 IMLPFHINIY PLAVLFEDAL VLGAVNDTVL YDSLYTRNSA REQLEVLFPF ENSTTRP00000011439/1-1340 IMLPFHINIY PLAVLFEDAL VLGAVNDTVL YDSLYTRNSA REQLEVLFPF 851 900 ENSP00000416696/1-1423 CVVERTSQIY LHHILRQLLV RNLGEQALLL AQSCATLPYF PHVLELMLHE ENSBTAP00000001692/1-1422 CVVERTSQIY LHHILRQLLV RNLGEQALLL AQSCATLPYF PHVLELMLHE bmy_03027T0/1-1105 CVVERTSQIY LHHILRQLLV RNLGEQALLL AQSCAALPYF PHVLELMLHE BACU009454/1-1342 CVVERTSQIY LHHILRQLLV RNLGEQALLL AQSCAALPYF PHVLELMLHE ENSTTRP00000011439/1-1340 CVVERTSQIY LHHILRQLLV RNLGEQALLL AQSCAALPYF PHVLELMLHE 901 950 ENSP00000416696/1-1423 VLEEEATSRE PIPDPLLPTV AKFITEFPLF LQTVVHCARK TEYALWNYLF ENSBTAP00000001692/1-1422 VLEEEATSRE PIPDPLLPTV AKFITEFPLF LQTVVHCARK TEYALWNYLF bmy_03027T0/1-1105 VLEEEATSRE PIPDPLLPTV AKFITEFPLF LQTVVHCARK TEYALWNYLF BACU009454/1-1342 VLEEEATSRE PIPDPLLPTV AKFITEFPLF LQTVVHCARK TEYALWNYLF ENSTTRP00000011439/1-1340 VLEEEATSRE PIPDPLLPTV AKFITEFPLF LQTVVHCARK TEYALWNYLF 951 1000 ENSP00000416696/1-1423 AAVGNPKDLF EECLMAQDLD TAASYLIILQ NMEVPAVSRQ HATLLFNTAL ENSBTAP00000001692/1-1422 AAVGNPKDLF EECLMAQDLD TAASYLIILQ NMEVPAVSRQ HATLLFNTAL bmy_03027T0/1-1105 AAVGNPKDLF EECLMAQDLD TAASYLIILQ NMEVPAVSRQ HATLLFNTAL BACU009454/1-1342 AAVGNPKDLF EECLMAQDLD TAASYLIILQ NMEVPAVSRQ HATLLFNTAL ENSTTRP00000011439/1-1340 AAVGNPKDLF EECLMAQDLD TAASYLIILQ NMEVPAVSRQ HATLLFNTAL 1001 1050 ENSP00000416696/1-1423 EQGKWDLCRH MIRFLKAIGS GESETPPSTP TAQEPSSS-G GFEFFRNRSI ENSBTAP00000001692/1-1422 EQGKWDLCRH MIRFLKAIGS GESETPPSTP TTQEPSSSGG GFEFFRNRSI bmy_03027T0/1-1105 EQSKWDLCRH MIRFLKAIGS GESETPPSTP TAQEPSSS-G GFEFFRNRSI BACU009454/1-1342 EQSKWDLCRH MIRFLKAIGS GESETPPSTP TAQEPSSS-G GFEFFRNRSI ENSTTRP00000011439/1-1340 EQSKWDLCRH MIRFLKAIGS GESETPPSTP TAQEPSSS-G GFEFFRNRSI 1051 1100 ENSP00000416696/1-1423 SLSQSAENVP ASKFSLQKTL SMPSGPSGKR WSKDSDCAEN MYIDMMLWRH ENSBTAP00000001692/1-1422 SLSQSADSVP ASKFSLQKTL SMPSGPSGKR WSKDSDCAEN MYIDMMLWRH bmy_03027T0/1-1105 SLSQSAENVP ASKFSLQKTL SMPSGPSGKR WSKDSDCAEN MYIDMMLWRH BACU009454/1-1342 SLSQSAENVP ASKFSLQKTL SMPSGPSGKR WSKDSDCAEN MYIDMMLWRH ENSTTRP00000011439/1-1340 SLSQSAENVP ASKFSLQKTL SMPSGPSGKR WSKDSDCAEN MYIDMMLWRH 1101 1150 ENSP00000416696/1-1423 ARRLLEDVRL KDLGCFAAQL GFELISWLCK ERTRAARVDN FVIALKRLHK ENSBTAP00000001692/1-1422 ARRLLEEVRL KDLGCFAAQL GFELISWLCK ERARAARVDN FVLALKRLHK bmy_03027T0/1-1105 ARRLLEEVRL KDLGCFAAQL GFELISWLCK ERTRAARVDN FVLALKRLHK BACU009454/1-1342 ARRLLEEVRL KDLGCFAAQL GFELISWLCK ERTRAARVDN FVLALKRLHK ENSTTRP00000011439/1-1340 ARRLLEEVRL KDLGCFAAQL GFELISWLCK ERTRAARVDN FVLALKGLHK 1151 1200 ENSP00000416696/1-1423 DFLWPLPIIP ASSISSPFKN GKYRTVGEQL LKSQSADPFL NLEMDAGISN ENSBTAP00000001692/1-1422 DFLWPLPIIP ASSVSSPFKN GKYRTVGEQL LKSQSTDPFL NLEIDAGVSN bmy_03027T0/1-1105 DFLWPLPIIP ASSLSSPFKN GKYRT----- ---------- ---------- BACU009454/1-1342 DFLWPLPIIP ASSLSSPFKN GKYRTVGEQL LTSQSADPFL NLEIDAGISN ENSTTRP00000011439/1-1340 DFLWPLPIIP ASSLSSPF-N GKYRTVGEQL LTSQSADPFL NLEIDAGISN 1201 1250 ENSP00000416696/1-1423 IQRSQSWLSN IGPTHHEIDT ASSHGPQMQD AFLSPLSNKG DECSIGSATD ENSBTAP00000001692/1-1422 VQRSQSWLGN IGPAHQEIDT ASSHGPQMQD AFLSPLSNKG DECSIGSATD bmy_03027T0/1-1105 ---------- ---------- ---------- ---------G DECSIGSATD BACU009454/1-1342 VQRSQSWLGN IGPTHHEIDT ASSHGPQMQD AFLSPLSNKG DECSIGSATD ENSTTRP00000011439/1-1340 VQRSRSWLGN IGPTHHEIDT ASSHGPQMQD AFLSPLSNKG DECSIGSATD 1251 1300 ENSP00000416696/1-1423 LTESSSMVDG DWTMVDENFS TLSLTQSELE HISMELASKG PHKSQVQLRY ENSBTAP00000001692/1-1422 LTESSSMVDG DWTMVDENFS TLSLTQSELE HISMELASKG PHKSQVQLRY bmy_03027T0/1-1105 LTESSSMVDG DWTMVDENFS TLSLTQSDLE HISMELASKG PHKSQVQLRY BACU009454/1-1342 LTESSSMVDG DWTMVDENFS TLSLTQSDLE HISMELASKG PHKSQVQLRY ENSTTRP00000011439/1-1340 LTESSSMVDG DWTMVDENFS TLSLTQSDLE HISMELASKG PHKSQVQLRY 1301 1350 ENSP00000416696/1-1423 LLHIFMEAGC LDWCIVIGLI LRESSIINQI LVITQSSEVD GEMLQNIKTG ENSBTAP00000001692/1-1422 LLHIFMEAGC LDWCIVIGLI LRESSIINQI LVIIQSSEVD GEMLQNIKTG bmy_03027T0/1-1105 LLHIFMEAGC LDWCVVIGLI LRESSIINQI LVIIQSSEVD GEMLQNIKTG BACU009454/1-1342 LLHIFMEAGC LDWCVVIGLI LRESSVINQI LVIIQSSEVD GEMLQNIKTG ENSTTRP00000011439/1-1340 LLHIFMEAGC LDWCAVIGLI LRESSVINQI LVIIQSSEVD GEMLQNIKTG 1351 1400 ENSP00000416696/1-1423 LHAVDRWAST DCPGYKPFLN IIKPQLQKLS EITEEQVQPD AFQPITMGKT ENSBTAP00000001692/1-1422 LHAVDRWAST DCPGYKPFLN IIKPHLQKLS EITEEQVQPE AFQPMTVGKT bmy_03027T0/1-1105 LHAVDRWAST DCPGYKPFLN IIKPQLQKLS EITEEQVQPE AFQPITVGKT BACU009454/1-1342 LHAVDRWAST DCPGYKPFLN IIKPQLQKLS EITEEQVQPE AFQPITVGKT ENSTTRP00000011439/1-1340 LHAVDRWAST DCPGYKPFLN IIKPQLQKLS EITEEQVQPE AFQPVTVGKT 1401 1450 ENSP00000416696/1-1423 PEQTSPRAEE SRGSSSHGSI PQGEVGSSNM VSRKEEDTAQ AEEEEPFQDG ENSBTAP00000001692/1-1422 PEQTSPRAEE NRSSLGHGSI PQGEVGGSSL VSRKEEDTTR AEEEEPFQDG bmy_03027T0/1-1105 PEQTSPRAEE NRSSSGHGSI PQGEFGGGSL VSRKEEDTTR AEEEEPFQDG BACU009454/1-1342 PEQSSPRAEE NRSSSSHGSI PQGEVGGSSL VSRKEEDTTR AEEEEPFQDG ENSTTRP00000011439/1-1340 PEQTTPRAEE NRSSSSHGSI PQGEVGGSSL VSRKEEDTMR AEEEEPFQDG 1451 1500 ENSP00000416696/1-1423 TYDCSVS ENSBTAP00000001692/1-1422 TYDCSVS bmy_03027T0/1-1105 TYDCSVS BACU009454/1-1342 TYDCSVS ENSTTRP00000011439/1-1340 TYDCSVS