KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:15:13 2014 Check: 00 .. Name: bmy_05275T0/1-441 Len: 773 Check: 1916 Weight: 1.00 Name: ENSP00000377566/1-773 Len: 773 Check: 378 Weight: 1.00 Name: ENSBTAP00000001696/1-652 Len: 773 Check: 9485 Weight: 1.00 Name: BACU018098/1-677 Len: 773 Check: 3891 Weight: 1.00 Name: ENSTTRP00000009756/1-770 Len: 773 Check: 8361 Weight: 1.00 // 1 50 bmy_05275T0/1-441 ---------- ---------- ---------- ---------- ---------- ENSP00000377566/1-773 MARSSSLGRE CGTPRSGLGK GGPPRPQGPQ ARCTLGRRCT VSGKCRRPRP ENSBTAP00000001696/1-652 ---------- ---------- ---------- ---------- ---------- BACU018098/1-677 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009756/1-770 LVGSGSLGCE CGPREPSLGQ -EHLRPQGPQ TRCALGGKCT SGK--YRGPH 51 100 bmy_05275T0/1-441 ---MAPPRNV VKIAVQMRDA IPQLIQLDQA KPLAAVLKEV CDAWSLPHSE ENSP00000377566/1-773 SWTMAPPRNV VKIAIKMRDA IPQLIQLDQA KPLAAVLKEV CDAWSLTHSE ENSBTAP00000001696/1-652 ---MAPPRNV VKIAVQMRDA IPQLIQLDQA KPLAAVLKEV CDAWSLPHSE BACU018098/1-677 ---MAPPRNV VKIAVQMRDA IPQLIQLDQA KPLAAVLKEV CDAWSLPHSE ENSTTRP00000009756/1-770 LGTMVPPRNV VKIAVQMRDA IPQLIQLDQA KPLAAVLKEV CDAWSLPHSE 101 150 bmy_05275T0/1-441 RYALQFADGH RRYITENNRT EIKNGSILCL STAPDLEAER LLRGLQSESC ENSP00000377566/1-773 RYALQFADGH RRYITENNRA EIKNGSILCL STAPDLEAEQ LLGGLQSNSP ENSBTAP00000001696/1-652 RYALQFADGH RRYITENNRM EIKNGSILCL STAPDREAER LLRGLQSESR BACU018098/1-677 RYALQFADGH RRYITEN--- ---------- ----DLEAER LLHGLQSESC ENSTTRP00000009756/1-770 RYALQFADGH RRYITENNRT EIKNGSILCL STAPDLEAER LLRGLQSESC 151 200 bmy_05275T0/1-441 EGRREALRHL VLLAPDMTFT REVISRDGLQ RLGSIIEDGD DLGEVLALAL ENSP00000377566/1-773 EGRREALRRL VPLASDMIFA REVISRNGLQ ILGTIIEDGD DLGEVLALSL ENSBTAP00000001696/1-652 EGRREALRHL LLLAPDLTFA REVISRDGLQ RLGTIIEDGD DLGEVLALAL BACU018098/1-677 EGRREALRHL VLLAPDMTFT REVISRDGLQ RLGSIIEDGD DLGEVLALAL ENSTTRP00000009756/1-770 EGRREALQHL VLLAPDMTFT REVISRDGLQ RLGSIIEDGD DLGEVLALAL 201 250 bmy_05275T0/1-441 RAFLELMEHG VVSWETLSIP FVRKVVCYVN MNLMDASVQP LALGLLESVT ENSP00000377566/1-773 RAFSELMEHG VVSWETLSIP FVRKVVCYVN MNLMDASVPP LALGLLESVT ENSBTAP00000001696/1-652 RAFLELMEHG VVSWETLSIP FVRKVVCYVN MNLMDASVQP LALGLLENVT BACU018098/1-677 RAFLELMEHG VVSWETLSIP FVRKVVCYVN MNLMDASVQP LALGLLESVT ENSTTRP00000009756/1-770 RAFLELMEHG VVSWETLSIP FVRKVVCYVN MNLMDASVQP LALGLLESVT 251 300 bmy_05275T0/1-441 LSSPALGQLV KSEVPLDRLL VHLQVMNQQL QTKAMALLTA LLQGASAAER ENSP00000377566/1-773 LSSPALGQLV KSEVPLDRLL VHLQVMNQQL QTKAMALLTA LLQGASPVER ENSBTAP00000001696/1-652 LSSPTLGQLV KSEVPLDRLL VHLQVMNQQL QTKAMALLTA LLQGATPAER BACU018098/1-677 LSSPALGQLV KSEVPLDRLL VHLQVMNQQL QTKAMALLTA LLQGASAAER ENSTTRP00000009756/1-770 LSSPALGQLV KSEVPLDRLL VHLQVMNQQL QTKAMALLTA LLQGASAAER 301 350 bmy_05275T0/1-441 KHMLDYLWQR NLRQFIYKNI IHSAAPLGDE MAHHLYVVQA LTLGLLEPRM ENSP00000377566/1-773 KHMLDYLWQR NLRQFIYKNI IHSAAPMGDE MAHHLYVLQA LMLGLLEPRM ENSBTAP00000001696/1-652 KHMLDYLWQR NLRQFIYKNI IHSAAPLGDE MAHHLYVLQA LMLGLLEPRM BACU018098/1-677 KHMLDYLWQR NLRQFIYKNI IHSAAPLGDE MAHHLYVLQA LTLGLLEPRM ENSTTRP00000009756/1-770 KHMLDYLWQR NLRQFIYKHI IHSAAPLGDE MAHHLYVLQA LTLELLEPRM 351 400 bmy_05275T0/1-441 RTPLDPYSQE QREQLQALRQ AAFEPEGESL GPGLSADRRR SLCAREFRKL ENSP00000377566/1-773 RTPLDPYSQE QREQLQVLRQ AAFEVEGESS GAGLSADRRR SLCAREFRKL ENSBTAP00000001696/1-652 RTPLDPYSQE QREQLQALRQ AAFEPEGESV GAGLSADRRR SLCAREFRKL BACU018098/1-677 RTPLDPYSQE QREQLQALRQ AAFEPEGESL GTGLSADRRR SLCAREFRKL ENSTTRP00000009756/1-770 RTPLDPYSQE QREQLQALRQ AAFEPEGESL GTGLSADRRR SLCAREFRKL 401 450 bmy_05275T0/1-441 GFSNSNPAQD LERVPPGLLA LDNMLYFSRH APSAYSR--V SDRVGWDTAG ENSP00000377566/1-773 GFSNSNPAQD LERVPPGLLA LDNMLYFSRN APSAYSRFVL ENSSREDKHE ENSBTAP00000001696/1-652 GFSNSNPAQD LERVPPGLLA LDNMLYFSRQ APSAYSRFVL ENSSREDKHE BACU018098/1-677 GFSNSNPAQD LERVPPGLLA LDNMLYFSRH APSAYSRFVL ENSSREDKHE ENSTTRP00000009756/1-770 GFSNSNPAQD LERVPPGLLA LDNMLYFSRH APSAYSRFVL ENSSREDKHX 451 500 bmy_05275T0/1-441 CHLGGVSTAL VV-------- ---------- ---------- TPHPVLC--- ENSP00000377566/1-773 CPFARGSIQL TVLLCELLRV GEPCSETAQD FSPMFFGQDQ SFHELFCVGI ENSBTAP00000001696/1-652 CPFARSSIQL TVLLCDLLHV GEPCSETAQD FSPMFFGQDQ SFHELFCVSI BACU018098/1-677 CPFARSSIQL TVLLCELLHV GEPCSETAQD FSPMFFGQDQ SFHELFCVSI ENSTTRP00000009756/1-770 XXXXXXXXXQ TVLLCELLHV GEPCSETAQD FSPMFFGQDQ SFHELFCVSI 501 550 bmy_05275T0/1-441 ---------- ---------- ---------- ---------- ---------- ENSP00000377566/1-773 QLLNKTWKEM RATQEDFDKV MQVVREQLAR TLALKPTSLE LFRTKVNALT ENSBTAP00000001696/1-652 QLLNKTWKEM RATQEDFDKV MQVVREQLAR TLALKPSSLE LFRTKVNALT BACU018098/1-677 QLLNKTWKEM RATQEDFD-- ---------- ---------- ----KVNALT ENSTTRP00000009756/1-770 QLLNKTWKEM RATQEDFDKV TQVVREQLAR TLALKPSSLE LFRTKVNALT 551 600 bmy_05275T0/1-441 ---------- ---------- ---------- ---------- ---------- ENSP00000377566/1-773 YGEVLRLRQT ERLHQEGTLA PPILELREKL KPELMGLIRQ QRLLRLCEGT ENSBTAP00000001696/1-652 YGEVLRLRQT ERLHQEGTLA PPILELREKL KPELMGLIRQ QRLLRLCEGT BACU018098/1-677 YGEVLRLRQT ERLHQEGTLA PPILELREKL KPELMGLIRQ QRLLRLCEGT ENSTTRP00000009756/1-770 YGEVLRLRQT ERLHQEGTLA PPILELREKL KPELMGLIRQ QRLLRLCEGT 601 650 bmy_05275T0/1-441 ---------- ---------- PHHPSLCWRT AAVRTSTSVP ---------- ENSP00000377566/1-773 LFRKISSRRR QDKLWFCCLS PNHKLLQYGD MEEGASPPTL ESLPEQLPVA ENSBTAP00000001696/1-652 LFHKISSRRR QDKLWFCCLS PNHKVLQYGD VEEGVGPPTP ESLPEQLPVA BACU018098/1-677 LFRKISSRRR QDKLWFCCLS PNHKVLQYGD VEEGVGPPAP ESLPEQLPVA ENSTTRP00000009756/1-770 LFRKISSRRR QDKLWFCCLS PNHKVLQYGD VEEGVGPPTP ESLPEQLPVA 651 700 bmy_05275T0/1-441 -----LPGAA SS-------- ---------- ---------- ---------- ENSP00000377566/1-773 DMRALLTGKD CPHVREKGSG KQNKDLYELA FSISYDRGEE EAYLNFIAPS ENSBTAP00000001696/1-652 DIRALLTGKD CPHVREKGSG KQNKDVCELA FSVSYDHGEE EAYLNFIAPS BACU018098/1-677 DIRALLTGKD CPHVREKGSG KQNKDVCELA FSVSYDHGEE EAYLNFIAPS ENSTTRP00000009756/1-770 NIRALLTGKD CPHVREKGSG KQNKDVCELA FSVSYDHGEE EAYLNFVAPS 701 750 bmy_05275T0/1-441 ---------- ---------- ---------- ---------- ---------- ENSP00000377566/1-773 KREFYLWTDG LSALLGSPMG SEQTRLDLEQ LLTMETKLRL LELENVPIPE ENSBTAP00000001696/1-652 KRE------- --------MG ---------- ---------- ---------- BACU018098/1-677 KREFHLWTDG LSALLGSPMG SEQTRLDLEQ LLTMETKLRL LELENVPIPE ENSTTRP00000009756/1-770 KREFHLWTDG LSALLGSPMG SEQTRLDLEQ LLTMETKLRL LELENVPIPE 751 800 bmy_05275T0/1-441 ---------- ---------- --- ENSP00000377566/1-773 RPPPVPPPPT NFNFCYDCSI AEP ENSBTAP00000001696/1-652 ---------- ---------- --- BACU018098/1-677 QPPPVPPPPT NFNFCYDCSI AEP ENSTTRP00000009756/1-770 QPPPVPPPPT NFNFCYDCSI AEP