KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:15:13 2014 Check: 00 .. Name: bmy_07111T0/1-427 Len: 573 Check: 7794 Weight: 1.00 Name: ENSTTRP00000008656/1-555 Len: 573 Check: 4687 Weight: 1.00 Name: ENSP00000367309/1-520 Len: 573 Check: 8170 Weight: 1.00 Name: ENSBTAP00000001698/1-520 Len: 573 Check: 64 Weight: 1.00 Name: BACU008457/1-520 Len: 573 Check: 9337 Weight: 1.00 // 1 50 bmy_07111T0/1-427 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008656/1-555 PLAEALVRGG SAAGEDRVPD TGAAGTEVAR RGTSNMSSKC DVVVVGGGIS ENSP00000367309/1-520 ---------- ---------- ---------- -----MSNKC DVVVVGGGIS ENSBTAP00000001698/1-520 ---------- ---------- ---------- -----MSSKC DVVVVGGGIS BACU008457/1-520 ---------- ---------- ---------- -----MSSKC DVVVVGGGIS 51 100 bmy_07111T0/1-427 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008656/1-555 GMTAAKLLHD SGLNVIVLEA RDRVGGRTYT IRNQKVKYVD LGGSYVGPTQ ENSP00000367309/1-520 GMAAAKLLHD SGLNVVVLEA RDRVGGRTYT LRNQKVKYVD LGGSYVGPTQ ENSBTAP00000001698/1-520 GMAAAKLLHD SGLNVIVLEA RDRVGGRTYT LRNQKVKYVD LGGSYVGPTQ BACU008457/1-520 GMAAAKLLHD SGLNVIVLEA RDRVGGRTYT IRNQKVKYVD LGGSYVGPTQ 101 150 bmy_07111T0/1-427 ---------- ---------- ---------- ---------- MWNPIAYLDH ENSTTRP00000008656/1-555 NRILRLSKEL GLETYKVNEV ERLIYHVKXX XXXXXXXXXX XXXXXXXXXX ENSP00000367309/1-520 NRILRLAKEL GLETYKVNEV ERLIHHVKGK SYPFRGPFPP VWNPITYLDH ENSBTAP00000001698/1-520 NHILRLSKEL GLETYKVNEV ERLIHHTKGK SYPFRGSFPS VWNPITYLDH BACU008457/1-520 NRILRLSKEL GLETYKVKQV ERLIHHVKGK SYPFRGPFPP MWNPIAYLDH 151 200 bmy_07111T0/1-427 NNLWRTMDDM GREIPSDAPW KAPLAEQWDH MTMKELLDKI CWTESSKRLA ENSTTRP00000008656/1-555 XXXXXXXXXX XXXIPSDAPW KAPLAEQWDH MTMKELLDKI CWTESSKQLA ENSP00000367309/1-520 NNFWRTMDDM GREIPSDAPW KAPLAEEWDN MTMKELLDKL CWTESAKQLA ENSBTAP00000001698/1-520 NNLWRTMDDM GREIPSDAPW KAPLAEQWDL MTMKELLDKI CWTESSKQLA BACU008457/1-520 NNLWRTMDDM GREIPSDAPW KAPLAEQWDH MTMKELLDKI CWTESSKQLA 201 250 bmy_07111T0/1-427 TLFVNLCVTA ETHEVSALWF LWYVKQCGGS ARIMSTTNGG QERKFVGGSG ENSTTRP00000008656/1-555 TLFVNLCVTA ETHEVSALWF LWYVKQCGGS ARIISTTNGG QERKFVGGSG ENSP00000367309/1-520 TLFVNLCVTA ETHEVSALWF LWYVKQCGGT TRIISTTNGG QERKFVGGSG ENSBTAP00000001698/1-520 ILFVNLCVTA EIHEVSALWF LWYVKQCGGT TRIFSTSNGG QERKFVGGSG BACU008457/1-520 TLFVNVCVTA ETHEVSALWF LWYVKQCGGS ARIMSTTNGG QERKFVGGSG 251 300 bmy_07111T0/1-427 QVSERIMDLL GDRVKLERPV IHIDQTGENV LVETLNHEVY EAKYVVSAIP ENSTTRP00000008656/1-555 QVSERIMDLL GDRVKLERPV IHIDQTGENV LVETLNHEVY EAKYVISAIP ENSP00000367309/1-520 QVSERIMDLL GDRVKLERPV IYIDQTRENV LVETLNHEMY EAKYVISAIP ENSBTAP00000001698/1-520 QVSERIMDLL GDRVKLERPV IHIDQTGENV LVETLNHELY EAKYVISAVP BACU008457/1-520 EVSERIMDLL GDRVKLERPV IHVDQTGENV LVETLNHEVY EAKYVVSAIP 301 350 bmy_07111T0/1-427 PVLGMKIHFN PPLPMMRNQL ITRVPLGSVI KCIVYYKEPF WRNKDYCGSM ENSTTRP00000008656/1-555 PVLGMKIHFS PPLPMMRNQL ITRVPLGSVI KCIVYYKEPF WRNKDYCGSM ENSP00000367309/1-520 PTLGMKIHFN PPLPMMRNQM ITRVPLGSVI KCIVYYKEPF WRKKDYCGTM ENSBTAP00000001698/1-520 PVLGMKIHFN PPLPMMRNQL ITRVPLGSVI KSIVYYKEPF WRNMDYCGSM BACU008457/1-520 PVLGMKIHFN PPLPMMRNQL ITRVPLGSVI KCIVYYKEPF WRNKDYCGSM 351 400 bmy_07111T0/1-427 IIEGEEAPVA YTLDDTKPDG SYAAIIGFIL AHKARKLTRL TKEERLKKLC ENSTTRP00000008656/1-555 IIEGEEAPVA YTLDDTKPDG SYAAIIGFIL AHKARKLTRL TKEERLKKLC ENSP00000367309/1-520 IIDGEEAPVA YTLDDTKPEG NYAAIMGFIL AHKARKLARL TKEERLKKLC ENSBTAP00000001698/1-520 IIEGEEAPVA YALDDTKPDG SYPAIIGFIL AHKARKLARL TKEERLKKLC BACU008457/1-520 IIEGEEAPVA YTLDDTKPDG SYAAIIGFIL AHKARKLTRL TKEERLKKLC 401 450 bmy_07111T0/1-427 DLYAKVLGSQ EALHPVHYEE KNWCEEQYSG GCYTTYFPPG IMTQYGRVLR ENSTTRP00000008656/1-555 DLYAKVLGSQ EALHPVHYEE KNWCEEQYSG GCYTTYFPPG ILTQYGRVLR ENSP00000367309/1-520 ELYAKVLGSL EALEPVHYEE KNWCEEQYSG GCYTTYFPPG ILTQYGRVLR ENSBTAP00000001698/1-520 DLYAKVLGSQ EALHPVHYEE KNWCEEQYSG GCYTSYFPPG IMTQYGRVLR BACU008457/1-520 DLYAKVLGSQ EALHPVHYEE KNWCEEQYSG GCYTTYFPPG IMTQYGRVLR 451 500 bmy_07111T0/1-427 QPVGRIYFAG TETATHWSGY MEGAVEAGER AAREILHAMG KIPEDEIWQP ENSTTRP00000008656/1-555 QPVGRIYFAG TETAAHWSGY MEGAVEAGER AAREILHAMG KIPEDEIWQP ENSP00000367309/1-520 QPVDRIYFAG TETATHWSGY MEGAVEAGER AAREILHAMG KIPEDEIWQS ENSBTAP00000001698/1-520 QPVGRIYFAG TETATHWSGY MEGAVEAGER AAREILHAMG KIPEDEIWLP BACU008457/1-520 QPVGRIYFAG TETATRWSGY MEGAVEAGER AAREILHAMG KIPEDEIWQP 501 550 bmy_07111T0/1-427 EPESVKIKQK FLELCGSSEK ETTSCYRKDL ELAWTLSPSS PWLIPP---- ENSTTRP00000008656/1-555 EPESVDVPAK PI-------- -TTTFLERHL -------PSV PGLLRLIGLT ENSP00000367309/1-520 EPESVDVPAQ PI-------- -TTTFLERHL -------PSV PGLLRLIGLT ENSBTAP00000001698/1-520 EPESVDVPAK PI-------- -TTTFLQRHL -------PSV PGLLKLIGLT BACU008457/1-520 EPESVDVPAK PI-------- -TTTFLERHL -------PSV PGLLRLIGLT 551 600 bmy_07111T0/1-427 --FWSRVVLY LPFSSSAVKR SGP ENSTTRP00000008656/1-555 TILSATALGY LAHKRGLLVR V-- ENSP00000367309/1-520 TIFSATALGF LAHKRGLLVR V-- ENSBTAP00000001698/1-520 TIFSATALGY LAHKRGLLVR I-- BACU008457/1-520 TILSATALGY LAHKRGLLVR V--