KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:15:14 2014 Check: 00 .. Name: ENSP00000200453/1-674 Len: 727 Check: 2405 Weight: 1.00 Name: ENSBTAP00000001702/1-670 Len: 727 Check: 5073 Weight: 1.00 Name: ENSTTRP00000001173/1-563 Len: 727 Check: 9151 Weight: 1.00 Name: bmy_06411T0/1-468 Len: 727 Check: 641 Weight: 1.00 Name: BACU002194/1-467 Len: 727 Check: 9327 Weight: 1.00 // 1 50 ENSP00000200453/1-674 MAPGQAPHQA TPWRDAHPFF LLSPVMGLLS RAWSRLRGLG PLEPWLVEAV ENSBTAP00000001702/1-670 MAPGQMPHQP APWRGTHPLF LLSPLMGLLS RAWSLLRAPG PPEPWLVEAV ENSTTRP00000001173/1-563 MAPGQVPHQP APWRDTHPFY LVSPLMGLLS WAWSHLRGPR SPEPWLVEAV bmy_06411T0/1-468 MAPGQAPHQP APWRDTHPFY LLSPLVGLLS WAWSHLRGPG SPEPWLVEAV BACU002194/1-467 MTPGQVPHQP APWRDTHPFC LLSPLVGLLS RAWSHLRGPG SPEPWLVEAV 51 100 ENSP00000200453/1-674 KGAALVEAGL EGEARTPLAI PHTPWGRRPE EEAEDSGGPG EDRET----- ENSBTAP00000001702/1-670 TEADQGGAGL EDEAKASLAT YHALWGRHPQ EETKDSGAAE EDREASPGAC ENSTTRP00000001173/1-563 TGTDQGEAVP EGEAKASLAT HHAPKGRHPQ EETGDSGAAE KDGEA----- bmy_06411T0/1-468 TRTDQGEAVP EGEAKASLAT HHAPKVRHPQ EETGDSGAAE EDGEASRGAC BACU002194/1-467 TRTDQ-RAVP EGEAKASLAT HHAPKVRHPQ EETGDSGAAE EDGEASRGAC 101 150 ENSP00000200453/1-674 LGLKTSSSLP EAWGLLDDDD GMYGEREATS VPRGQGSQFA DGQRAPLSPS ENSBTAP00000001702/1-670 PNLEAKHSLP EAWGLSDDDD EKYGGEEATG VPREQ-KEFM DGQPAPLPLS ENSTTRP00000001173/1-563 PGLETKCSLL EAWGLSDNDD EEYGREEATS IPREQGSEFM DGQPAPLCPS bmy_06411T0/1-468 PDLETKCSLL EGWGLSDDDD EEYGREEATS VPREQGSEFM DGRPAPLSPS BACU002194/1-467 PDLETKCSLL EGWGLSDDDD EEYGREEATS VPREQGSEFR DGQPAPLSPS 151 200 ENSP00000200453/1-674 LLIRTLQGSD KNPGEEKAEE EGVA--EEEG VNKFSYPPSH RECCPAVE-- ENSBTAP00000001702/1-670 LLIRSLPDL- --PGEEESKE EAVTGGGGNE VTAFSFPLSH WECCPG---- ENSTTRP00000001173/1-563 LLVTSLQDL- --PGEEESKE EGVT--EDEE VITFSFPPSP WECCPGVEE- bmy_06411T0/1-468 LLVTSLQDL- --PGEEESKE EGVT--EDKE VITFSFPPSH WECCPGVEEE BACU002194/1-467 LLVTSLQDL- --PGEEESKE EGVT--EDKE VITFSFPPSH WECCPGVEEE 201 250 ENSP00000200453/1-674 ----EEDDEE AVKKEAHRTS TSALSPGSKP STWVSCPGEE ENQATEDKRT ENSBTAP00000001702/1-670 ----EEEEEE EENGEAVR-- ---------- ---VCRP--- VNGATEE-RT ENSTTRP00000001173/1-563 ----EEDDEE AVNKEAPRTS ASPLALGSKP RAWVCCP--- VDGATEEERT bmy_06411T0/1-468 EEEGEEEDEE AVNKEAPRTS TSPLALRSKP RAWVCCP--- VDGATEEERT BACU002194/1-467 EEEGEEEEEE AVNKEAPRTS TSPLALGCKP RAWVCCP--- LDGVTEEERT 251 300 ENSP00000200453/1-674 ERSKGARKTS VSPRSSGSDP RSWEYRSGEA SEEKEEKAHK ETGKGEAAPG ENSBTAP00000001702/1-670 Q-TEAATKTS MSPSSVGSHL RAWECCSGKE SE--EEEKDK QAEKGDADPG ENSTTRP00000001173/1-563 E-NKAATKTS ICPPSAGSHL RAWECWSGEE PE--EEKP-I KAEKGEADPE bmy_06411T0/1-468 E-NKAATKTS ICPSSAGSHL RARECCSGGE PE--EEKA-K KAEKGEADPE BACU002194/1-467 E-TKAATKTS ICPSSAGSRL RARECCSGGE PE--EEKA-K KAEKGEADPE 301 350 ENSP00000200453/1-674 PQSSAPAQRP QLKSWWCQPS DEEEGEVKAL GAAEKDGEAE CPPCIPPPSA ENSBTAP00000001702/1-670 PHFTSLAQRP SLRTWQHPSS AITEEE---- -EDRDSEEMG ASSSVPLTSA ENSTTRP00000001173/1-563 PHSPVPAQSP LLRTWQHQSS EITEEE---- ---------- ---------- bmy_06411T0/1-468 PHSSILAQRP PLRTWQHQSS AITEEE---- ---------- ---------- BACU002194/1-467 PHSSVLAQRP PLRTWQHQSS AITEEE---- ---------- ---------- 351 400 ENSP00000200453/1-674 FLKAWVYWPG EDTEEEEDEE EDEDSDSGSD EEEGEAEASS STPATGVFLK ENSBTAP00000001702/1-670 FLSDWVYQP- --EDTEEEDE EEEDCDSEAT EDEGEAEVSS ATPPPSAFLS ENSTTRP00000001173/1-563 ---------- ---------E EEEDSDS--- ---GEAEASS SIPHTSAFLR bmy_06411T0/1-468 ---------- ---------E EEEDRDA--- ---GEAEASS SIPPTSAFLS BACU002194/1-467 ---------- ---------E EEEDRDA--- ---GEAEASS SIPPTSAFLR 401 450 ENSP00000200453/1-674 SWVYQPGEDT EEEED----- ---------- ---------- ---------- ENSBTAP00000001702/1-670 AWVYRPGEDT EEEEDCDSEA TEDEGEAEVS SATPPTSAFL SAWVYQPGDT ENSTTRP00000001173/1-563 AWVYRPGEDT EEETEC---- ---------- ---------- ---------- bmy_06411T0/1-468 AWVYRPGEDT EEESEC---- ---------- ---------- ---------- BACU002194/1-467 AWVYRPGEDT EEESEC---- ---------- ---------- ---------- 451 500 ENSP00000200453/1-674 ---EDSDTGS AEDEREAETS ASTPPASAFL KAWVYRPGED TEEEEDEDVD ENSBTAP00000001702/1-670 EEEEDCDSEA TEDEGEAEVS SATPPPSAFL SAWVYRPGED TEEED----E ENSTTRP00000001173/1-563 ---EG----- ---------- ---------- ---------- ---------E bmy_06411T0/1-468 ---ED----- ---------- ---------- ---------- ---------E BACU002194/1-467 ---ED----- ---------- ---------- ---------- ---------E 501 550 ENSP00000200453/1-674 SEDKEDDSEA ALGEAESDPH PSHPDQRAHF RGWGYRPGKE TEEEEAAEDW ENSBTAP00000001702/1-670 YEDEDNESGA ----ADLGPS PSLQTQSALL RDQIYQPGEK TDGGEAAEKW ENSTTRP00000001173/1-563 NEDEDDESEA ----ADLEPS PSLQTQSALF RDRIYQPGEE TEGGEAATEW bmy_06411T0/1-468 NEDEDDESEA ----ADLEPS PSLQAQSALF RDRIYQPGEE AEGGEAATEW BACU002194/1-467 NEDEDGESEA ----ADLEPS PSLQAQSALF RDRIYQPGEE AEGGEAATEW 551 600 ENSP00000200453/1-674 GEAEPCPFRV AIYVPGEKPP PPWAPPRLPL RLQRRLKRPE TPTHDPDPET ENSBTAP00000001702/1-670 GEAESCPFRV AIYLPGEKPP PPWDPPRLPL RLQRRLKSAQ TPTRHQDLER ENSTTRP00000001173/1-563 GEAEPCPFRV AIYLPGEKAP PPWAPPRLPL RLQMRLKSAE TPTRHRDPEP bmy_06411T0/1-468 GEAEPCPFRV AIYLPGEKAP PPWAPPPLPL RLQTRLKSAE TPTRHRDPEP BACU002194/1-467 GEAEPCPFRV AIYLPGEKAP PPWAPPPLPL RLQTRLKSAE TPTRHRDPEP 601 650 ENSP00000200453/1-674 PLKARKVRFS EKVTVHFLAV WAGPAQAARQ GPWEQLARDR SRFARRITQA ENSBTAP00000001702/1-670 LLKTRKVRFS EKVSIHPLVV WAGPAQAARR GPWEQFARDR SRFARRIAQV ENSTTRP00000001173/1-563 PLKTRKVRFS EKVSVHLLAV WAGPAQAARR GPWEQFARDR SRFARRIAQA bmy_06411T0/1-468 PLKTRKVGAE ---------- ---------- ---------- ---------- BACU002194/1-467 PLKTRKVGAE ---------- ---------- ---------- ---------- 651 700 ENSP00000200453/1-674 QEELSPCLTP AARARAWARL RNPP--LAPI PALTQTLPSS SVPSSPVQTT ENSBTAP00000001702/1-670 QEELGPYLTP AARARAWARL GNPPTSLATV PA-----PTQ TSPMSPIQAT ENSTTRP00000001173/1-563 QEELGPYLTP AARARAWARL GNPPTSLATI PA-----PTP TLPMSP-QTT bmy_06411T0/1-468 ---------- ---------- ---------- ---------- ---------- BACU002194/1-467 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000200453/1-674 PLSQAVATPS RSSAAAAAAL DLSGRRG ENSBTAP00000001702/1-670 PLSHALASP- -SPPCVSPSL DLSGRRG ENSTTRP00000001173/1-563 PLSHILASP- -SPPCVSPCL DLSGRRG bmy_06411T0/1-468 ---------- ---------- ---GSDS BACU002194/1-467 ---------- ---------- ---GSDS