KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:15:14 2014 Check: 00 .. Name: ENSP00000231751/1-710 Len: 754 Check: 4198 Weight: 1.00 Name: ENSBTAP00000001704/1-708 Len: 754 Check: 9805 Weight: 1.00 Name: ENSTTRP00000016393/1-708 Len: 754 Check: 9214 Weight: 1.00 Name: bmy_05634T0/1-562 Len: 754 Check: 5805 Weight: 1.00 Name: BACU002450/1-692 Len: 754 Check: 9609 Weight: 1.00 // 1 50 ENSP00000231751/1-710 MKLVFLVLLF LGAL------ ------GLCL AGRRRSVQWC AVSQPEATKC ENSBTAP00000001704/1-708 MKLFVPALLS LGAL------ ------GLCL AAPRKNVRWC TISQPEWFKC ENSTTRP00000016393/1-708 MKLFFPALLS LGAL------ ------GLCL AGPTKNVRWC AISLPEWLKC bmy_05634T0/1-562 MKLFFPALLS LGALVVEPSL LGLFLPGLCV AVPKKNVRWC AISQPEWLKC BACU002450/1-692 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000231751/1-710 FQWQRNMRKV RGPPVSCIKR DSPIQCIQAI AENRADAVTL DGGFIYEAGL ENSBTAP00000001704/1-708 RRWQWRMKKL GAPSITCVRR AFALECIRAI AEKKADAVTL DGGMVFEAGR ENSTTRP00000016393/1-708 YQWRWRMKSL GTPSVTCVRR TSRFECIQAI AANKADAVTL DGGLVFEAGL bmy_05634T0/1-562 YXWQXRMKKL GTPSVTCVRR TSRFECIQAI AAKKADAVTL DGGLVFEAGL BACU002450/1-692 ------MKKL GTPSVTCVRR TSRFECIQAI AAKKADAVTL DGGLVFEAGL 101 150 ENSP00000231751/1-710 APYKLRPVAA EVYGTERQPR THYYAVAVVK KGGSFQLNEL QGLKSCHTGL ENSBTAP00000001704/1-708 DPYKLRPVAA EIYGTKESPQ THYYAVAVVK KGSNFQLDQL QGRKSCHTGL ENSTTRP00000016393/1-708 DPYKLRPVAA EVYGTEEQPQ TQYYAVAVVK KGSNFQLNQL QGRKSCHTGF bmy_05634T0/1-562 DPYKLRPVAA EVYGTEKEPQ TQYYAVAVVK KGSNFQLNQL QGRKSCHTGL BACU002450/1-692 DPYKLRPVAA EVYGTEKEPQ TQYYAVAVVK KGSNFQLNQL QGRKSCHTGL 151 200 ENSP00000231751/1-710 RRTAGWNVPI GTLRPFLNWT GPPEPIEAAV ARFFSASCVP GADKGQFPNL ENSBTAP00000001704/1-708 GRSAGWIIPM GILRPYLSWT ESLEPLQGAV AKFFSASCVP CIDRQAYPNL ENSTTRP00000016393/1-708 GRSAGWNIPM GTLRPFLNWT GPPEPLQKAV AKFFSASCVP CVDGKEYPNL bmy_05634T0/1-562 GRSAGWNIPM GILRPFLNWT GPPEPLQKAV AKFFSASCVP CVDGKEYPNL BACU002450/1-692 GRSAGWNIPM GILRPFLNWT GPPEPLQKAV AKFFSASCVP CVDGKEYPNL 201 250 ENSP00000231751/1-710 CRLCAGTGEN KCAFSSQEPY FSYSGAFKCL RDGAGDVAFI RESTVFEDLS ENSBTAP00000001704/1-708 CQLCKGEGEN QCACSSREPY FGYSGAFKCL QDGAGDVAFV KETTVFENLP ENSTTRP00000016393/1-708 CQLCTGTGRN KCACSSQEPY FGYSGAFKCL QDGAGDVAFV KDSTVFENLP bmy_05634T0/1-562 CQLCTGTGGN KCACSSQEPY FGYSGAFKCL QDGAGDVAFV KDSTVFENLP BACU002450/1-692 CQLCTGTGGN KCACSSQEPY FGYSGAFKCL QDGAGDVAFV KDSTVFE--- 251 300 ENSP00000231751/1-710 DEAERDEYEL LCPDNTRKPV DKFKDCHLAR VPSHAVVARS VNGKEDAIWN ENSBTAP00000001704/1-708 EKADRDQYEL LCLNNSRAPV DAFKECHLAQ VPSHAVVARS VDGKEDLIWK ENSTTRP00000016393/1-708 AKADRDQYEL LCPNNTRKPV DAFKECHLAQ IPSHAVVARS VDGKEDLIWN bmy_05634T0/1-562 EKADRDQYEL LCPNNTRKPV DAFKECHLAQ IPSHAVVARS VDGKEDLIWK BACU002450/1-692 -KADRDQYEL LCPNNTRKPV DAFKECHLAQ IPSHAVVARS VDGKEDLIWK 301 350 ENSP00000231751/1-710 LLRQAQEKFG KDKSPKFQLF GSPSGQKDLL FKDSAIGFSR VPPRIDSGLY ENSBTAP00000001704/1-708 LLSKAQEKFG KNKSRSFQLF GSPPGQRDLL FKDSALGFLR IPSKVDSALY ENSTTRP00000016393/1-708 LLLKAQEKFG KSALQGFQLF GSPPGQKDLL FKDSALGFLR IPSKIDSGLY bmy_05634T0/1-562 LLHKAQEKFG KSTLQGFQLF GSPRGQKDLL FKDSALGFLR IPSKIDSGLY BACU002450/1-692 LLRKAQEKFG KSSVQGFQLF GSPRGQKDLL FKDSALGFLR IPSKIDSGLY 351 400 ENSP00000231751/1-710 LGSGYFTAIQ NLRKSEEEVA ARRARVVWCA VGEQELRKCN QWSGLSEGSV ENSBTAP00000001704/1-708 LGSRYLTTLK NLRETAEEVK ARYTRVVWCA VGPEEQKKCQ QWSQQSGQNV ENSTTRP00000016393/1-708 LGFRYLTALQ GLRETAAEVE ARRARVVWCA VGQEEERKCR QWSLQSNQNV bmy_05634T0/1-562 LGFRYLTALQ GLRETAAEVE ARRARVVWCA VGPEEQRKCQ QWSLQSSQSV BACU002450/1-692 LGFRYLTALQ GLRETAAEVE ARRARVVWCA VGPEEQRKCQ QWSLHSSQSV 401 450 ENSP00000231751/1-710 TCSSASTTED CIALVLKGEA DAMSLDGGYV YTAGKCGLVP VLAENYKSQQ ENSBTAP00000001704/1-708 TCATASTTDD CIVLVLKGEA DALNLDGGYI YTAGKCGLVP VLAENRKSSK ENSTTRP00000016393/1-708 SCATATTTED CIALVLKGEA DALSLDGGYI YTAGKCGLVP VLAENQKSSK bmy_05634T0/1-562 ACATASTTDD CIALVLKGEA DALSLDGGYV YTAGKCGLVP VLAENQKSSK BACU002450/1-692 ACASASTTDD CIALVLKGEA DALSLDGGYV YTAGKCGLVP VLAENQKSSK 451 500 ENSP00000231751/1-710 SSDPDPNCVD RPVE------ -----GYLAV AVVRRSDTSL TWNSVKGKKS ENSBTAP00000001704/1-708 HSSLD--CVL RPTE------ -----GYLAV AVVKKANEGL TWNSLKDKKS ENSTTRP00000016393/1-708 SNSLD--CVH RPTE------ -----GYLAV AVVKKANAEL TWNSLRGKKS bmy_05634T0/1-562 SNGPD--CVH RPTE------ -----GYLAV AVVKKANDEL TWNSLRGKKS BACU002450/1-692 SNSTD--CVH RPTEGELESI TFSVKGYLAV AVVKKANDEL TWNSLRGKKS 501 550 ENSP00000231751/1-710 CHTAVDRTAG WNIPMGLLFN QTGSCKFDEY FSQSCAPGSD PRSNLCALCI ENSBTAP00000001704/1-708 CHTAVDRTAG WNIPMGLIVN QTGSCAFDEF FSQSCAPGAD PKSRLCALCA ENSTTRP00000016393/1-708 CHTAVDRTAG WNIPMGLIAN QTGSCKFDEF FDQSCAPGAD PKSSLCALCV bmy_05634T0/1-562 CHTAVDRTAG WNIPMGLIAN QTGSCKFDEF FDKSCAPGAD PRSSLCALCV BACU002450/1-692 CHTAVDRTAG WNIPMGLIAN QTGSCKFDEF FDKSCAPGAD PRSSLCALCV 551 600 ENSP00000231751/1-710 GDEQGENKCV PNSNERYYGY TGAFRCLAEN AGDVAFVKDV TVLQNTDGNN ENSBTAP00000001704/1-708 GDDQGLDKCV PNSKEKYYGY TGAFRCLAED VGDVAFVKND TVWENTNGES ENSTTRP00000016393/1-708 GDDWNMNKCV PNSKERYYGY TGAFRCLAED AGDVAFVKDA TVLENTNXXX bmy_05634T0/1-562 GDDQNVDKCV PNSKERYYGY TGAFR----- ---------- ---------- BACU002450/1-692 GDDQNVDKCV PNSKERYYGY TGAFRCLAED AGDVAFVKDV TVLENTNGEN 601 650 ENSP00000231751/1-710 NEAWAKDLKL ADFALLCLDG KRKPVTEARS CHLAMAPNHA VVSRMDKVER ENSBTAP00000001704/1-708 TADWAKNLNR EDFRLLCLDG TRKPVTEAQS CHLAVAPNHA VVSRSDRAAH ENSTTRP00000016393/1-708 XXXXXXXXXX XDFELLCLDG T-VPVTEAES CYLAVAPNHA VVSRSDKAAH bmy_05634T0/1-562 ---------- ---------- ---------- ---------- ---------- BACU002450/1-692 TAAWARKLDR EDFKLLCLDG TRKPVTEAQS CHLAVAPNHA VVSRSDKAAH 651 700 ENSP00000231751/1-710 LKQVLLHQQA KFGRNGSDCP DKFCLFQSET KNLLFNDNTE CLARLHGKTT ENSBTAP00000001704/1-708 VKQVLLHQQA LFGKNGKNCP DKFCLFKSET KNLLFNDNTE CLAKLGGRPT ENSTTRP00000016393/1-708 VEEVLLRQQA QFGKNGKHCP DRFCLFQSET KNLLFNDNTE CLAKLGGKTT bmy_05634T0/1-562 ---------- ---------- ---------- ---------- ---------- BACU002450/1-692 VEQVLLLQQA QFGKNGKDCP GKFCLFQSET KNLLFNDNTE CLAKLGGKTT 701 750 ENSP00000231751/1-710 YEKYLGPQYV AGITNLKKCS TSPLLEACEF LRK------- ---------- ENSBTAP00000001704/1-708 YEEYLGTEYV TAIANLKKCS TSPLLEACAF LTR------- ---------- ENSTTRP00000016393/1-708 YEKYLGPEYV TAIANLKKCS TSPFLEACAF LRGQ------ ---------- bmy_05634T0/1-562 ---------- ---------- ---------- ---------- ---------- BACU002450/1-692 YEKYLGPEYV TAIANLKKCS TTPLLEACAF LTRSNLKRSC PTSPGASAPP 751 800 ENSP00000231751/1-710 ---- ENSBTAP00000001704/1-708 ---- ENSTTRP00000016393/1-708 ---- bmy_05634T0/1-562 ---- BACU002450/1-692 CFQP