KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:15:23 2014 Check: 00 .. Name: bmy_05117T0/1-394 Len: 540 Check: 5442 Weight: 1.00 Name: ENSTTRP00000003656/1-537 Len: 540 Check: 5205 Weight: 1.00 Name: ENSP00000313854/1-538 Len: 540 Check: 2429 Weight: 1.00 Name: ENSBTAP00000001754/1-538 Len: 540 Check: 4518 Weight: 1.00 Name: BACU014728/1-513 Len: 540 Check: 2706 Weight: 1.00 // 1 50 bmy_05117T0/1-394 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003656/1-537 MWSGRSSFTS LVVGVFVVYV VHTCWVMYGI VYTRPCAGDG NCIQPYLARR ENSP00000313854/1-538 MWSGRSSFTS LVVGVFVVYV VHTCWVMYGI VYTRPCSGDA NCIQPYLARR ENSBTAP00000001754/1-538 MWSGRSSFTS LVVGVFVVYV VHTCWVMYGI VYTRPCSGHG RCIQPYLAQR BACU014728/1-513 ---------- ---------- ------MYGI VYTRPCAGDS NCIQPYLARR 51 100 bmy_05117T0/1-394 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003656/1-537 PKLQLSVYTA TRSNLGAENN VDLVLNVEDF DVESKFERTV NVSVPKKTRN ENSP00000313854/1-538 PKLQLSVYTT TRSHLGAENN IDLVLNVEDF DVESKFERTV NVSVPKKTRN ENSBTAP00000001754/1-538 PKLQLSVYTT TRSNLGSENN VDLVLNVEDF DVESKFERTV NVSVPKKTRN BACU014728/1-513 PKLQLSVYTT TRSNLGAENN VDLVLNVEDF DVESKFERTV NVSVPKKTRN 101 150 bmy_05117T0/1-394 ---------- -MAPLLPW-- ---------- ---------- ----AGVSWD ENSTTRP00000003656/1-537 NGTLYAYIFV HHAGVLPWHD GKQVHLVSPL TTYMVPKPEE VNLLTGESAT ENSP00000313854/1-538 NGTLYAYIFL HHAGVLPWHD GKQVHLVSPL TTYMVPKPEE INLLTGESDT ENSBTAP00000001754/1-538 NGTLYAYVFL HHAGVLPWND AKQVHLVSPL TTYMVPRPEE VSLLAGGPAA BACU014728/1-513 NGTLYAYIFV HHAGVLPWHD GKQVHLVSPL TTYMVPKPEE VNLLTGESAT 151 200 bmy_05117T0/1-394 ----CCDQKP LKMRGDEFCE ATPRLG---- -AAFSPGGTG ARGDLETAPT ENSTTRP00000003656/1-537 -QQIEAEKRP ASALDEPVSH WRPRLTLNVM VDDFVFDGAS LPADVHRY-M ENSP00000313854/1-538 -QQIEAEKKP TSALDEPVSH WRPRLALNVM ADNFVFDGSS LPADVHRY-M ENSBTAP00000001754/1-538 -QQIEAEKRP TSALDEPVSH WRPRLTLNVM VDNFVFDGAS LPADVQRY-M BACU014728/1-513 QQQIEAEKRP TSALDEPVSH WRPRLTLNVM VDDFIFDGAS LPADVHRY-M 201 250 bmy_05117T0/1-394 PRIQLGEAVH YLPILFIDQL SNRVRDLMVI NRSTTELPLT VSYDKISLGR ENSTTRP00000003656/1-537 KMIRLGKTVH YLPILFIDQL SSRVKDLTVI NRSTTELPLT VSYDKISLGR ENSP00000313854/1-538 KMIQLGKTVH YLPILFIDQL SNRVKDLMVI NRSTTELPLT VSYDKVSLGR ENSBTAP00000001754/1-538 KMIQLGKTVQ YLPILFIDQL SNRVKDLMVI NRSSTELPLT VSYDKISLGR BACU014728/1-513 KMVQLGEAVH YLPILFIDQL SNRVRDLMVI NRSTTELPLT VSYDKISLGR 251 300 bmy_05117T0/1-394 LRFWIHMQDA VYSLQQFGFS EKDADEVKGI FVDTNLYFLA LTFFVAAFHL ENSTTRP00000003656/1-537 LRFWIHMH-A VFSLQQFXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXL ENSP00000313854/1-538 LRFWIHMQDA VYSLQQFGFS EKDADEVKGI FVDTNLYFLA LTFFVAAFHL ENSBTAP00000001754/1-538 LRFWIHMQDA VYSLQQFGFS EKDADEVKGI FVDTNLYFLA LTFFVAAFHL BACU014728/1-513 LRFWIHMQDA VYSLQQFGFS EKDADEVKGI FVDTNLYFLA LTFFVAAFHL 301 350 bmy_05117T0/1-394 LFDFLAFKND ISFWKKKKSM IGMSTKAVLW RCFSTVVIFL FLLDEQTSLL ENSTTRP00000003656/1-537 LFDFLAFKND ISFWKKKKSM TGMSTKAVLW RCFSTVVIFL FLLDERTSLL ENSP00000313854/1-538 LFDFLAFKND ISFWKKKKSM IGMSTKAVLW RCFSTVVIFL FLLDEQTSLL ENSBTAP00000001754/1-538 LFDFLAFKND ISFWKKKKSM IGMSTKAVLW RCFSTVVIFL FLLDEQTSLL BACU014728/1-513 LFDFLAFKND ISFWKKKKSM IGMSTKAVLW RCFSTVVIFL FLLDEQTSLL 351 400 bmy_05117T0/1-394 VLVPAGIGAA IELWKVKKAL KMTVIWRGLR PTFQFGTYSE SERRTEEYDT ENSTTRP00000003656/1-537 VLVPAGIGAA IELWKVKKAL KVTVIWRGLR PAFQFGTYSE SERQTEEYDT ENSP00000313854/1-538 VLVPAGVGAA IELWKVKKAL KMTIFWRGLM PEFQFGTYSE SERKTEEYDT ENSBTAP00000001754/1-538 VLVPAGIGAA IELWKVKKAL KMTVIWRGLW PTFQFGTYSE SERRTEEYDA BACU014728/1-513 VLVPAGIGAA IELWKVKKAL KMTVAWRGLR PTFQFGTYSE SERRTEEYDT 401 450 bmy_05117T0/1-394 QAMKYLSYLL YPLCIGGAVY SLLNVRYKSW YSWLVSSFVN GVYAFGFLFM ENSTTRP00000003656/1-537 QAMKYLSYLL YPLCIGGAVY SLLNVRYKSW YSWLVSSFVN GVYAFGFLFM ENSP00000313854/1-538 QAMKYLSYLL YPLCVGGAVY SLLNIKYKSW YSWLINSFVN GVYAFGFLFM ENSBTAP00000001754/1-538 QAMKYLSYLL YPLCIGGAIY SLLNIKYKSW YSWLINSFVN GVYAFGFLFM BACU014728/1-513 QAMKYLSYLL YPLCIGGAVY SLLNVRYKSW YSWLVSSFVN GVYAFGFLFM 451 500 bmy_05117T0/1-394 LPQLFVNYKM KSVAHLPWKA FTYKAFNTFI DDVFAFIITM PTSHRLACFR ENSTTRP00000003656/1-537 LPQLFVNYKM KSVAHLPWKA FTYKAFNTFI DDVFAFIITM PTSHRLACFR ENSP00000313854/1-538 LPQLFVNYKL KSVAHLPWKA FTYKAFNTFI DDVFAFIITM PTSHRLACFR ENSBTAP00000001754/1-538 LPQLFVNYKM KSVAHLPWKA FTYKAFNTFI DDVFAFIITM PTSHRLACFR BACU014728/1-513 LPQLFVNYKM KSVAHLPWKA FTYKAFNTFI DDVFAFIITM PTSHRLACFR 501 550 bmy_05117T0/1-394 DDVVFLVYLY QRWLYPVDKS RVNEFGESYE GNPQRKPHAD ENSTTRP00000003656/1-537 DDVVFLVYLY QRWLYPVDKS RVNEFGESYE GNPQRKPHED ENSP00000313854/1-538 DDVVFLVYLY QRWLYPVDKR RVNEFGESYE EKATRAPHTD ENSBTAP00000001754/1-538 DDVVFLVYLY QRWLYPVDKS RVNEFGESYE DTPQRKPHTD BACU014728/1-513 DDVVFLVYLY QRWLYPVDKS RVNEFGESYE GNPQRKPHAD