KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:15:25 2014 Check: 00 .. Name: ENSP00000320821/1-1103 Len: 1251 Check: 8535 Weight: 1.00 Name: bmy_08636T0/1-1193 Len: 1251 Check: 8014 Weight: 1.00 Name: ENSTTRP00000001225/1-1080 Len: 1251 Check: 3907 Weight: 1.00 Name: BACU001294/1-1116 Len: 1251 Check: 799 Weight: 1.00 Name: ENSBTAP00000001780/1-1105 Len: 1251 Check: 6643 Weight: 1.00 // 1 50 ENSP00000320821/1-1103 ---------- ---------- ---------- ---------- ---------- bmy_08636T0/1-1193 -PFSGRRAPA RPSARARPPI PRPSLPPQLV LPGRAPAAGA ATAAAPGARV ENSTTRP00000001225/1-1080 ---------- ---------- ---------- ---------- ---------- BACU001294/1-1116 MCYLSRGGAE RCQARGGRRL AGPEDTVRMA AQKGRDGGLC ENCW------ ENSBTAP00000001780/1-1105 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000320821/1-1103 ---------- ---------- ---------- ---------- ---------- bmy_08636T0/1-1193 RRPPPGDPAR GGGSPEPAPD RPRSRLTLPG KFVPLHSAPP LREPRRDELR ENSTTRP00000001225/1-1080 ---------- ---------- ---------- ---------- ---------- BACU001294/1-1116 ---------- ---------- ---------- ---------- --------LR ENSBTAP00000001780/1-1105 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000320821/1-1103 -------MAG ASVKVAVRVR PFNARETSQD AKCVVSMQGN TTSIINPKQS bmy_08636T0/1-1193 RVVVSGAMAG ASVKVAVRVR PFNARETSQD AKCVVSMQGS TTSIINPKQS ENSTTRP00000001225/1-1080 --------TG SSEKLGVK-- ---------- ---------G HYNIINPRQS BACU001294/1-1116 RVVVSGAMAG ASVKVAVRVR PFNARETSQD AKCVVSMQGS TTSIINPKQS ENSBTAP00000001780/1-1105 -------MAG ASVKVAVRVR PFNARETSQD AKCVVSMQGS TTSIINPKQS 151 200 ENSP00000320821/1-1103 KDAPKSFTFD YSYWSHTSTE DPQFASQQQV YRDIGEEMLL HAFEGYNVCI bmy_08636T0/1-1193 KDAPKSFTFD YSYWSHTSAE DPQFASQQQV YRDIGEEMLL HAFEGYNVCI ENSTTRP00000001225/1-1080 KDAPKSFTFD YSYWSHTSAE DPQFASQQQV YRDIGEEMLL HAFEGYNVCI BACU001294/1-1116 KDAPKSFTFD YSYWSHTSAE DPQFASQQQV YRDIGEEMLL HAFEGYNVCI ENSBTAP00000001780/1-1105 KDAPKSFTFD YSYWSHTSAE DPQFASQQQV YRDIGEEMLL HAFEGYNVCI 201 250 ENSP00000320821/1-1103 FAYGQTGAGK SYTMMGRQEP GQQGIVPQLC EDLFSRVSEN QSAQLSYSVE bmy_08636T0/1-1193 FAYGQTGAGK SYTMMGRQEP GQQGIVPQLC EDLFSRVSKN QSAQLSYSVE ENSTTRP00000001225/1-1080 FAYGQTGAGK SYTMMGRQEP GQQGIVPQLC EDLFSRVSKN QSAQLSYSVE BACU001294/1-1116 FAYGQTGAGK SYTMMGRQEP GQQGIVPQLC EDLFSRVSKN QSAQLSYSVE ENSBTAP00000001780/1-1105 FAYGQTGAGK SYTMMGRQEP GQQGIVPQLC EDLFSRVSKN QSAELSYSVE 251 300 ENSP00000320821/1-1103 VSYMEIYCER VRDLLNPKSR GSLRVREHPI LGPYVQDLSK LAVTSYADIA bmy_08636T0/1-1193 ---------- --------SR GSLRVREHPI LGPYVQDLSK LAVTSYADIA ENSTTRP00000001225/1-1080 VSYMEIYCER VRDLLNPKSR GSLRVREHPI LGPYVQDLSK LAVTSYADIA BACU001294/1-1116 VSYMEIYCER VRDLLNPKSR GSLRVREHPI LGPYVQDLSK LAVTSYADIA ENSBTAP00000001780/1-1105 VSYMEIYCER VRDLLNPKSR GSLRVREHPI LGPYVQDLSK LAVTSYADIA 301 350 ENSP00000320821/1-1103 DLMDCGNKAR TVAATNMNET SSRSHAVFTI VFTQRCHDQL TGLDSEKVSK bmy_08636T0/1-1193 DLMDCGNKAR TVAATNMNET SSRSHAVFTI VFTQRCHDQL TGLDSEKVSK ENSTTRP00000001225/1-1080 DLMDCGNKAR TVAATNMNET SSRSHAVFTI VFTQRCHDQL TGLDSEKVSK BACU001294/1-1116 DLMDCGNKAR ---------- ---------- ---------- ---------K ENSBTAP00000001780/1-1105 DLMDCGNKAR TVAATNMNET SSRSHAVFTI VFTQRCHDQL TGLDSEKVSK 351 400 ENSP00000320821/1-1103 ISLVDLAGSE RADSSGARGM RLKEGANINK SLTTLGKVIS ALADMQSKKR bmy_08636T0/1-1193 ISLVDLAGSE RADSSGARGM RLKEGANINK SLTTLGKVIS ALADMQSKKR ENSTTRP00000001225/1-1080 ISLVDLAGSE RADSSGARGM RLKEGANINK SLTTLGKVIS ALADMQSKKR BACU001294/1-1116 ISLVDLAGSE RADSSGARGM RLKEGANINK SLTTLGKVIS ALADMQSKKR ENSBTAP00000001780/1-1105 ISLVDLAGSE RADSSGARGM RLKEGANINK SLTTLGKVIS ALADMQSKKR 401 450 ENSP00000320821/1-1103 KSDFIPYRDS VLTWLLKENL GGNSRTAMIA ALSPADINYE ETLSTLRYAD bmy_08636T0/1-1193 KSDFIPYRDS VLTWLLKENL GGNSRTAMIA ALSPADINYE ETLSTLRYAD ENSTTRP00000001225/1-1080 KSDFIPYRDS VLTWLLKENL GGNSRTAMIA ALSPADINYE ETLSTLRYAD BACU001294/1-1116 KSDFIPYRDS VLTWLLKENL GGNSRTAMIA ALSPADINYE ETLSTLRYAD ENSBTAP00000001780/1-1105 KSDFIPYRDS VLTWLLKENL GGNSRTAMIA ALSPADINYE ETLSTLRYAD 451 500 ENSP00000320821/1-1103 RTKQIRCNAI INEDPNARLI RELQEEVARL RELLMAQGLS ASALEGLKTE bmy_08636T0/1-1193 RTKQIRCNAI INEDPNARLI RELQEEVARL RELLMAQGLS TSALGGLKVD ENSTTRP00000001225/1-1080 RTKQIRCNAI INEDPNARLI RELQEEVARL RELLMAQGLS ASALGGLKVD BACU001294/1-1116 RTKQIRCNAI INEDPNARLI RELQEEVARL RELLMAQGLS ASALGGLKVD ENSBTAP00000001780/1-1105 RTKQIRCNAV INEDPNARLI RELQEEVARL RELLMAQGLS ASALGGRKVD 501 550 ENSP00000320821/1-1103 EGSVRGALPA VSSPPAPVSP SSPTTHNGEL EPSFSPNTES QIGPEEAMER bmy_08636T0/1-1193 EGSPGGALPA VSSPSAPASP SSPAAHNGEL EPSFSPNAEP QIGPEEAMER ENSTTRP00000001225/1-1080 EGSPGGALPA VSSPSAPASP SSPAAHNGEL EPSFSPSAEP QIGPEEAMER BACU001294/1-1116 EGSPGGALPA VSSPSAPASP SSPAAHNGEL EPSFSPNAEP QIGPEEAMER ENSBTAP00000001780/1-1105 EGSPEGALPA LSSPSAPASP SSPAAHNGEL EPSFSPNAEP QIGPEEAMER 551 600 ENSP00000320821/1-1103 LQETEKIIAE LNETWEEKLR KTEALRME-- ---------- ---------- bmy_08636T0/1-1193 LQETEKIIAE LNETWEEKLR KTEALRMERC EDGADSWSPG GSGVGREGNG ENSTTRP00000001225/1-1080 LQETEKIIAE LNETWEEKLR KTEALRME-- ---------- ---------- BACU001294/1-1116 LQETEKIIAE LNETWEEKLH KTEALRME-- ---------- ---------- ENSBTAP00000001780/1-1105 LQETEKIIAE LNETWEEKLR KTEALRME-- ---------- ---------- 601 650 ENSP00000320821/1-1103 ---------- ------REAL LAEMGVAVRE DGGTVGVFSP KKTPHLVNLN bmy_08636T0/1-1193 FMGTDDKTNI CLSFAYREAL LAEMGVAVRE DGGTVGVFSP KKTPHLVNLN ENSTTRP00000001225/1-1080 ---------- ------REAL LAEMGVAVRE DGGTVGVFSP KKTPHLVNLN BACU001294/1-1116 ---------- ------REAL LAEMGVAVRE DGGTVGVFSP KKTPHLVNLN ENSBTAP00000001780/1-1105 ---------- ------REAL LAEMGVAVRE DGGTVGVFSP KKTPHLVNLN 651 700 ENSP00000320821/1-1103 EDPLMSECLL YHIKDGVT-- -RVGQVDMDI KLTGQFIREQ HCLFRSIPQP bmy_08636T0/1-1193 EDPLMSECLL YHIKD----- ---------- ---------- ---------- ENSTTRP00000001225/1-1080 EDPLMSECLL YHIKDGVT-- -RVGQVDVDI KLTGQFIREQ HCLFRSIPQP BACU001294/1-1116 EDPLMSECLL YHIKDGVT-- -RVGQVDVDI KLTGQFIREQ HCLFRSIPQP ENSBTAP00000001780/1-1105 EDPLMSECLL YHIKDGVTSF PRVGQVDVDI KLTGQFIREQ HCLFRSIPQS 701 750 ENSP00000320821/1-1103 DGEVVVTLEP CEGAETYVNG KLVTEPLVLK SGNRIVMGKN HVFRFNHPEQ bmy_08636T0/1-1193 ---VVVTLEP CEGAETYVNG KLVTEPVVLK SGNRIVMGKN HVFRFNHPEQ ENSTTRP00000001225/1-1080 DGEVVVTLEP CEGAETYVNG KLVTEPVVLK SGNRIVMGKN HVFRFNHPEQ BACU001294/1-1116 DGEVVVTLEP CEGAETYVNG KLVTEPVVLK SGNRIVMGKN HVFRFNHPEQ ENSBTAP00000001780/1-1105 DGEVVVTLEP CEGAETYVNG KLVTEPVVLK SGNRIVMGKN HVFRFNHPEQ 751 800 ENSP00000320821/1-1103 ARLERERGVP PPPGPPSEPV DWNFAQKELL EQQGIDIKLE MEKRLQDLEN bmy_08636T0/1-1193 ARLERERGVP PPPGPPFEPV DWNFAQKELL EQQGIDIKLE MEKRLQDLEN ENSTTRP00000001225/1-1080 ARLERERGVP PPPGPPFEPV DWNFAQKELL EQQGIDIKLE MEKRLQDLEN BACU001294/1-1116 ARLERERGVP PPPGPPFEPV DWNFAQKELL EQQGIDIKLE MEKRLQDLEN ENSBTAP00000001780/1-1105 ARLERERGIP PPPGPPSEPV DWNFAQKELL EQQGIDIKLE MEKRLQDLEN 801 850 ENSP00000320821/1-1103 QYRKEKEEAD LLLEQQRLYA DSDSGDDSDK RSCEESWRLI SSLREQLPPT bmy_08636T0/1-1193 QYRKEKEEAD LLLEQQRLYA DSDSGDDSDK RSCEESWRLI SSLREQLPPT ENSTTRP00000001225/1-1080 QYRKEKEEAD LLLEQQRLYA DSDSGDDSDK RSCEESWRLI SSLREQLPPT BACU001294/1-1116 QYRKEKEEAD LLLEQQRLYA DSDSGDDSDK RSCEESWRLI SSLREQLPPT ENSBTAP00000001780/1-1105 QYRKEKEEAD LLLEQQRLYA DSDSGDDSDK RSCEESWRLI SSLREQLPPT 851 900 ENSP00000320821/1-1103 TVQTIVKRCG LPSSGKRRAP RRVYQIPQRR RLQGKDPRWA TMADLKMQAV bmy_08636T0/1-1193 TVQTIVKRCG LPSSGKRRAP RRVYQIPQRR RLQGKDPRWA TMADLKMQAV ENSTTRP00000001225/1-1080 TVQTIVKRCG LPSSGKRRAP RRVYQIPQRR RLQGKDPRWA TMADLKMQAV BACU001294/1-1116 TVQTIVKRCG LPSSGKRRAP RRVYQIPQRR RLQGKDPRWA TMADLKMQAV ENSBTAP00000001780/1-1105 TVQTIVKRCG LPSSGKRRAP RRVYQIPQRR RLQGKDPRWA TMADLKMQAV 901 950 ENSP00000320821/1-1103 KEICYEVALA DFRHGRAEIE ALAALKMREL CRTYGKPDGP GDAWRAVARD bmy_08636T0/1-1193 KEICYEVALA DFRHGRAEIE ALAALKMREL CRTYGKPEGP GDAWRAVARD ENSTTRP00000001225/1-1080 KEICYEVALA DFRHGRAEIE ALAALKMREL CRTYGKPEGP GDAWRAVARD BACU001294/1-1116 KEICYEVALA DFRHGRAEIE ALAALKMREL CRTYGKPEGP GDAWRAVARD ENSBTAP00000001780/1-1105 KEICYEVALA DFRHGRAEIE ALAALKMREL CRTYGKPEGP GDAWRAVARD 951 1000 ENSP00000320821/1-1103 VWDTVGEEEG GGAGSGGGSE EGARGAEVED LRAHIDKLTG ILQEVKLQNS bmy_08636T0/1-1193 VWDTVGEEEG SGGG-GGGSE EGARGAEVED LRAHIDKLTG ILQEVKLQNS ENSTTRP00000001225/1-1080 VWDTVGEEEG SGGG-GGGSE EGARGAEVED LRAHIDKLTG ILQEVKLQNS BACU001294/1-1116 VWDTVGEEEG SGGG-GGGSE EGARGAEVED LRAHIDKLTG ILQEVKLQNS ENSBTAP00000001780/1-1105 VWDTVGEEEG GGGG-GGGSE EGARGAEVED LRAHIDKLTG ILQEVKLQNS 1001 1050 ENSP00000320821/1-1103 SKDRELQALR DRMLRMERVI PLAQDHEDEN EEGGEVPWAP PEGSEAAEEA bmy_08636T0/1-1193 SKDRELQALR DRMLRMERVI PLTQDHEDEN EEAGEATWAQ PQGSEVAEQE ENSTTRP00000001225/1-1080 SKDRELQALR DRMLRMERVI PLTQDHEDEN EEAGEATWAQ PQGSEAAEQE BACU001294/1-1116 SKDRELQALR DRMLRMERVI PLTQDHEDEN EEAGEATWAQ PQGSEVAEQE ENSBTAP00000001780/1-1105 TKDRELQALR DRMLRMERVI PLTQDHEDEN EEAGETTWAQ PQGSEAAEEE 1051 1100 ENSP00000320821/1-1103 APSDRMPSAR PPSPPLSSWE RVSRLMEEDP AFRRGRLRWL KQEQLRLQGL bmy_08636T0/1-1193 APSDQAPPAR PSSPPLSSWE RVSRLMEEDP AFRRGRLRWL KQEQLRLQGL ENSTTRP00000001225/1-1080 APSDRAPPAR PSSPPLSSWE RVSRLMEEDP AFRRGRLRWL KQEQLRLQGL BACU001294/1-1116 APSDRAPPAR PSSPPLSSWE RVSRLMEEDP AFRRGRLRWL KQEQLRLQGL ENSBTAP00000001780/1-1105 APSDRAPPAR PSSPPLSSWE RVSRLMEEDP AFRRGRLRWL KQEQLRLQGL 1101 1150 ENSP00000320821/1-1103 QGSGGRGGGL RRPPARFVPP HDCKLRFPFK SNPQHRESWP GMGSGEAPTP bmy_08636T0/1-1193 QGSGGRGGGL RRPPARFVPP HDCKLRFPFK SNPQHRESWP GAGAGESPAP ENSTTRP00000001225/1-1080 QGSGGRGGGL RRPPARFVPP HDCKLRFPFK SNPQHRESWP GAGAGESPMP BACU001294/1-1116 QGSGGRGGGL RRPPARFVPP HDCKLRFPFK SNPQHRESWP GAGAGESPAP ENSBTAP00000001780/1-1105 QGSGGRGGGL RRPPARFVPP HDCKLRFPFK SNPQHRESWP GAGAGESPAP 1151 1200 ENSP00000320821/1-1103 LQPPEEVTPH PATPARRPPS PRRSHHPRRN SLDGGGRSRG AGSAQPEPQH bmy_08636T0/1-1193 PQPPEELTPS LATPARRPPS PRRSHRPRRN SLDGGGRSRG GGSAQPEPQH ENSTTRP00000001225/1-1080 PQPPEELTPS LATPARRPPS PRRSHRPRRN SLDGGGRSRG GGSAQPEPQH BACU001294/1-1116 PQPPEELTSS PATPARRPPS PRRSHRPRRN SLDGGGRSRG GGSAQPEPQH ENSBTAP00000001780/1-1105 PQPPEELTPP PATPARRPPS PRRSHRPRRN SLDGGGRSRG GGSAQPEPQH 1201 1250 ENSP00000320821/1-1103 FQPKKHNSYP QPPQPYPAQR PPGPRYPPYT TPPRMRRQRS APDLKESGAA bmy_08636T0/1-1193 FQPKKHNYYP QQPQPYPAQR PPGPRYPPYT TPPRMRRQRS APDLKGRGAA ENSTTRP00000001225/1-1080 FQPKKHNYYP QQPQPYPAQR PPGPRYPPYT TPPRMRRQRS APDLKESGAA BACU001294/1-1116 FQPKKHNYYP QQPQPYPAQR PPGPRYPPYT TPPRMRRQRS APDLKESGAA ENSBTAP00000001780/1-1105 FQPKKHNYYP QQPQPYPAQR PPGPRYPPYT TPPRMRRQRS APDLKESGAA 1251 1300 ENSP00000320821/1-1103 V bmy_08636T0/1-1193 V ENSTTRP00000001225/1-1080 V BACU001294/1-1116 V ENSBTAP00000001780/1-1105 V