KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:15:31 2014 Check: 00 .. Name: ENSTTRP00000014789/1-878 Len: 1301 Check: 7248 Weight: 1.00 Name: bmy_02378T0/1-785 Len: 1301 Check: 4700 Weight: 1.00 Name: BACU009881/1-1270 Len: 1301 Check: 7140 Weight: 1.00 Name: ENSP00000356102/1-887 Len: 1301 Check: 3686 Weight: 1.00 Name: ENSBTAP00000001818/1-787 Len: 1301 Check: 4711 Weight: 1.00 // 1 50 ENSTTRP00000014789/1-878 -------MSQ PRPRYVVDRA AYSLTLFDDE FEKKDRTYPL GEKLRNAFRC bmy_02378T0/1-785 -------MSQ PRPRYVVDRA TYSLTLFDDE FEKKDRTYPL GEKLRSAFRC BACU009881/1-1270 MLVNVPDMSQ PRPRYVVDRA TYSLTLFDDE FEKKDRTYPL GEKLRNAFRC ENSP00000356102/1-887 -------MSQ PRPRYVVDRA AYSLTLFDDE FEKKDRTYPV GEKLRNAFRC ENSBTAP00000001818/1-787 -------MSQ PRPRYVVDRA AYSLTLFDDE FEKKDRTYPL GEKLCSTFRC 51 100 ENSTTRP00000014789/1-878 SSAKIKTAVF GLFPVLSWLP KYKIKDYIVP DLLGGISGGS IQVPQGMAFA bmy_02378T0/1-785 SSAKIKATLF RLLPVLSWLP KYKIKDYIIP DLLGGISGGS IQVPQGMAFA BACU009881/1-1270 SSAKIKTTVF RLLPVLSWLP KYKVKDYIIP DLLGGISGGS IQVPQGMAFA ENSP00000356102/1-887 SSAKIKAVVF GLLPVLSWLP KYKIKDYIIP DLLGGLSGGS IQVPQGMAFA ENSBTAP00000001818/1-787 SSAKIKTTVF GLLPILSWLP KYKIKDYIVP DILGGLSGGC IQVPQGMAFA 101 150 ENSTTRP00000014789/1-878 LLANLPAVNG LYSSFFPLLT YFFLGGIHQM VPGTFAVISI LVGNICLQLA bmy_02378T0/1-785 LLANLPAVNG LYSSFFPLLT YFFLGGIHQM VPGTFAVISI LVGNICLQLA BACU009881/1-1270 LLANLPAVNG LYSSFFPLLT YFFLGGIHQM VPGTFAVISI LVGNICLQLA ENSP00000356102/1-887 LLANLPAVNG LYSSFFPLLT YFFLGGVHQM VPGTFAVISI LVGNICLQLA ENSBTAP00000001818/1-787 LLANLPAVNG LYSSFFPLLT YFFLGGIHQM VPGTFAVISI LVGNICLQLA 151 200 ENSTTRP00000014789/1-878 PESKFRVFNN ATNESHVDTV AMEAERLHVS ATLACLTAVI QMGLGFVQFG bmy_02378T0/1-785 PESKFRVFNN ATNESHVDTV AMETERLHVS ATLACLTAII QMGLGFVQFG BACU009881/1-1270 PESKFRVFNN ATNESHVDTV AMEAERLHVS ATLACLTAII QMGLGFVQFG ENSP00000356102/1-887 PESKFQVFNN ATNESYVDTA AMEAERLHVS ATLACLTAII QMGLGFMQFG ENSBTAP00000001818/1-787 PESKFRVFNT TTNESYVDTG AMEADRLHVS ATLACLTAVI QMGLGFMQFG 201 250 ENSTTRP00000014789/1-878 FVAIYLSESF IRGFMTAAGL QILISVLKYI FGLTIPSYTG PGSIVFTFID bmy_02378T0/1-785 FVAIYLSESF IRGFMTAAGL QILISVLKYI FGLTIPSYTG PGSIIFTFID BACU009881/1-1270 FVAIYLSESF IRGFMTAAGL QILISVLKYI FGLTIPSYTG PGSIIFTFID ENSP00000356102/1-887 FVAIYLSESF IRGFMTAAGL QILISVLKYI FGLTIPSYTG PGSIVFTFID ENSBTAP00000001818/1-787 FVAIYLSESF IRGFMTAAGL QILISVLKYI FGLTVPSYAG PGSIVFTFID 251 300 ENSTTRP00000014789/1-878 ICKNLPHTNI ASLLFALISS VFLVLVKELN ARFMHKIRFP IPTEMIVVVV bmy_02378T0/1-785 ICKNLPHTNV ASLLFALISS VFLVLVKELN TRFMHKIRFP IPTEMIVVVV BACU009881/1-1270 ICKNLPHTNV ASLLFALISS VFLVLVKELN TRFMHKIRFP IPTEMIVVVV ENSP00000356102/1-887 ICKNLPHTNI ASLIFALISG AFLVLVKELN ARYMHKIRFP IPTEMIVVVV ENSBTAP00000001818/1-787 ICKNLAHTNI ASLIFALISG VVLVLVKELN ARYMHKIRFP IPTEMIVVVV 301 350 ENSTTRP00000014789/1-878 ATAISGGCKM PKKYHMQIVG EIQRGFPTPV LPVVSQWKDM IGTAFSLAIV bmy_02378T0/1-785 ATAISGGCKM PKKYHMQIVG EIQRGFPTPV LPVVSQWKDM IGTAFSLAIV BACU009881/1-1270 ATAISGGCKM PKKYHMQIVG EIQRGFPTPV LPVVSQWKDM IGTAFSLAIV ENSP00000356102/1-887 ATAISGGCKM PKKYHMQIVG EIQRGFPTPV SPVVSQWKDM IGTAFSLAIV ENSBTAP00000001818/1-787 ATAISGSYKM PKKYHMQIVG EIQPGFPTPV SPVVSQWKDM LGTAFSLAIV 351 400 ENSTTRP00000014789/1-878 GYVINLAVGR TLASKHGYDV DSNQEMIALG CSNFFGSFFK IHVICCALSV bmy_02378T0/1-785 GYVINLAVGR TLASKHGYDV DSNQEMIALG CSNFFGSFFK IHVICCALSV BACU009881/1-1270 GYVINLAVGR TLASKHGYDV DSNQEMIALG CSNFFGSFFK IHVICCALSV ENSP00000356102/1-887 SYVINLAMGR TLANKHGYDV DSNQEMIALG CSNFFGSFFK IHVICCALSV ENSBTAP00000001818/1-787 GYVINLAMGR TLANKHGYDV DANQEMIALG CSNFFGSFFK IHVICCALSV 401 450 ENSTTRP00000014789/1-878 TLAVDGAGGK SQMSSLCVSL VVMITMLALG SYLYPLPKAV LGALIAVNLK bmy_02378T0/1-785 TLAVDGAGGK SQVSAGPGEK GRKKWTPQVT RNNVLLPQAV LGALIAVNLK BACU009881/1-1270 TLAVDGAGGK SQMSSLCVSL VVMITMLVLG SYLYPLPKAV LGALIAVNLK ENSP00000356102/1-887 TLAVDGAGGK SQVASLCVSL VVMITMLVLG IYLYPLPKSV LGALIAVNLK ENSBTAP00000001818/1-787 TLAVDGAGGK SQVSSLCVSL VVMITMLVLG SYLYALPKSV LGALIAVNLK 451 500 ENSTTRP00000014789/1-878 NSLKQLADPY YLWRKSKLDC CVWVVSFLSA FFLSLPYGVA VGVGFSTLVV bmy_02378T0/1-785 NSLKQLADPY YLWRKSKLDC VGEAITVLEG WGTRVSRSQA SG-------- BACU009881/1-1270 NSLKQLADPY YLWRKSKLDC CIWVVSFLSA FFLSLPYGVA VGVAFSILVV ENSP00000356102/1-887 NSLKQLTDPY YLWRKSKLDC CIWVVSFLSS FFLSLPYGVA VGVAFSVLVV ENSBTAP00000001818/1-787 NSLKQLADPY YLWKKSKLDC CVWVVSFLSA FFLSLPYGVA VGVTFSALVV 501 550 ENSTTRP00000014789/1-878 IFQTQFRNGY TLAQVMDTDI YVNPKTYNRA QEIQGIKIIT YCSPLYFANS bmy_02378T0/1-785 ------RNGY TLAQVMDTDI YVNPKTYNRV QEIQGIKIIT YCSPLYFANS BACU009881/1-1270 IFQTQFRNGY TLAQVMDTDI YVNPKTYNRA QEIQGIKIIT YCSPLYFANS ENSP00000356102/1-887 VFQTQFRNGY ALAQVMDTDI YVNPKTYNRA QDIQGIKIIT YCSPLYFANS ENSBTAP00000001818/1-787 VFQTQFRNGC ALAQVMDTDI YVNPKTYNRV QEIQGIKIIT YCSPLYFANS 551 600 ENSTTRP00000014789/1-878 EIFRQKVTAK TGVDPQKVLL AKQKYLKRQE KGRRLPIQQR KSLFMKNKXX bmy_02378T0/1-785 EIFRQKVTAK TGVDPQKVLL AKQKYLKRQK KGRTVPMQQR KSLFMKTKTV BACU009881/1-1270 EIFRQKVTAK TGVDPQKVLL AKQKYLKRQE KGRTVPMQQR KSLFMKTKTV ENSP00000356102/1-887 EIFRQKVIAK TGMDPQKVLL AKQKYLKKQE KRRMRPTQQR RSLFMKTKTV ENSBTAP00000001818/1-787 EIFRQKVIAK TGVDPQKVLL AKQKSLKKQE KGRTMPKQQR KSLFMKTKTV 601 650 ENSTTRP00000014789/1-878 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_02378T0/1-785 SLQELQQDFE NGSPTDPNNN QTPANGASVS YITFSPDSST AASCEPPASA BACU009881/1-1270 SLQELQQDFE NGSPTDPNNN QTPANGASVS YITFSPDSST AASCEPPASA ENSP00000356102/1-887 SLQELQQDFE NAPPTDPNNN QTPANGTSVS YITFSPDSSS PAQSEPPASA ENSBTAP00000001818/1-787 SLQELQQDFE NGSPTDPNNN QTPANGASVS YITFSPDRSN AAHCEPPASA 651 700 ENSTTRP00000014789/1-878 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXLSSTYGRI bmy_02378T0/1-785 ----EPSDIL ASVPPFVTFH TLIFDMSGVS FVDLMGIKAL AKLSSTYGRI BACU009881/1-1270 ----EPSDIL ASVPPFVTFH TLIFDMSGVS FVDLMGIKAL AKLSSTYGKI ENSP00000356102/1-887 EAPGEPSDML ASVPPFVTFH TLILDMSGVS FVDLMGIKAL AKLSSTYGKI ENSBTAP00000001818/1-787 ----KPSDTL AGVPPFVTFH TLILDMSGVS FVDLMGIKTL AKLSSTYEKI 701 750 ENSTTRP00000014789/1-878 GVKVFLVNIH ---------- ---------- -------AQV YNDINHGGIF bmy_02378T0/1-785 GVKVFLVNIH GPLTIFPQPQ LLSMAVLPFE GDLSLLPAQV YNDINHGGVF BACU009881/1-1270 GVKVFLVNIH ---------- ---------- -------AQV YNDINHGGVF ENSP00000356102/1-887 GVKVFLVNIH ---------- ---------- -------AQV YNDISHGGVF ENSBTAP00000001818/1-787 GVKVFLVNIH ---------- ---------- -------AQV YNDISHGGLF 751 800 ENSTTRP00000014789/1-878 EDGCLERNHV FPSIH----- ---------- ---------- ---------- bmy_02378T0/1-785 EDGCLERNHV FPSIH----- ---------- ---------- ---------- BACU009881/1-1270 EDGCLERNHV FPSIHDXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000356102/1-887 EDGSLECKHV FPSIH----- ---------- ---------- ---------- ENSBTAP00000001818/1-787 EDGCLERSHV FPSIH----- ---------- ---------- ---------- 801 850 ENSTTRP00000014789/1-878 -DAVLFAQAK AREVAPARTF QGAPVDPELS LYDSEEDSPS CWDLEQ---- bmy_02378T0/1-785 -DAVLFAQAK AREVAPGRNF QGAPVDPELS LYDSEEDSPS CWDLEQ---- BACU009881/1-1270 XDAVLFAQAK AREVAPGRNF QGAPVDPELS LYDSEEDSPS CWDLEQVSTE ENSP00000356102/1-887 -DAVLFAQAN ARDVTPGHNF QGAPGDAELS LYDSEEDIRS YWDLEQ---- ENSBTAP00000001818/1-787 -DAVLFAQAQ AAEVAPGHDF QEAPVDPELS LYEPEEDSPS YWDLEQ---- 851 900 ENSTTRP00000014789/1-878 ---------- ---------- ---------- ---------- ---------- bmy_02378T0/1-785 ---------- ---------- ---------- ---------- ---------- BACU009881/1-1270 VYMDSSNTAQ REIKVLSPMF LRPPVLILIC NRNIFPTVFK TSFIRHEAVG ENSP00000356102/1-887 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001818/1-787 ---------- ---------- ---------- ---------- ---------- 901 950 ENSTTRP00000014789/1-878 ---------- ---------- ---------- ---------- ---------- bmy_02378T0/1-785 ---------- ---------- ---------- ---------- ---------- BACU009881/1-1270 EYSHLFTVQG SDPSLQPYML LAHIDVVPAP DEGWDVPPFS GLESDGFIYG ENSP00000356102/1-887 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001818/1-787 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSTTRP00000014789/1-878 ---------- ---------- ---------E MFGSMFHTET LTALASLSMA bmy_02378T0/1-785 ---------- ---------- ---------- ---------- ---------- BACU009881/1-1270 RGTLDNKNSL MAILQALELL LIRNYIPRRS FFIALGHDEE VSGVNGAQKI ENSP00000356102/1-887 ---------- ---------- ---------E MFGSMFHAET LTALESLSAA ENSBTAP00000001818/1-787 ---------- ---------- ---------E MFGSMFHAET LTAL------ 1001 1050 ENSTTRP00000014789/1-878 GRDTSILLLT L--------- ---------- -------RAP -------AAT bmy_02378T0/1-785 ---------- ---------- ---------- ---------- ---------- BACU009881/1-1270 SALLQARGIQ LAFIVDEGSF ILDGFIPNLQ KPFAMVSVSE KGAINLMLQV ENSP00000356102/1-887 GGCYPYRSES L--------- ---------- -------VSP LFTRQALAAM ENSBTAP00000001818/1-787 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSTTRP00000014789/1-878 SKPPSHSTAP TRALPV---- ---------- ---------- ---------- bmy_02378T0/1-785 ---------- ---------- ---------- ---------- ---------- BACU009881/1-1270 NMTPGHSSAP PKETSIGILA AAVSRLEQTP MPNMFGGGPL KMALQQLANE ENSP00000356102/1-887 DKPPAHSTPP TSALSL---- ---------- ---------- ---------- ENSBTAP00000001818/1-787 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSTTRP00000014789/1-878 ---------- ---------- ---------- ---------- ---------- bmy_02378T0/1-785 ---------- ---------- ---------- ---------- ---------- BACU009881/1-1270 FPFPANIVLS NLWLFQPLVS RLMERNYITN ALVRTTTALT MFNAGVKVNV ENSP00000356102/1-887 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001818/1-787 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSTTRP00000014789/1-878 ---------- ---------- ---------- ---------- ---------- bmy_02378T0/1-785 ---------- ---------- ---------- ---------- ---------- BACU009881/1-1270 IPPVAQATIN FRIHPAQTVQ EVLKLAKDIV ADDRIQFHVL NAFDPLPVSP ENSP00000356102/1-887 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001818/1-787 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSTTRP00000014789/1-878 AADRTPDCWT LRLS-QEQR- --GSCADVEC KLRVSWRQHG LVSDGVKLSR bmy_02378T0/1-785 ---------- ---------- ---------- ---------- ---------- BACU009881/1-1270 SDDQALGYQL LRQTIQSVFP EVNIVAPGTC IGNTDSRHYT NLTTGIYRFN ENSP00000356102/1-887 AAEGHLDFQL LRVS-QKQKD KYNCAGLLYK LQKVSQSPHG SVSDGVRLSR ENSBTAP00000001818/1-787 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSTTRP00000014789/1-878 TQ-------- ---------- ---------- ---------- ---------- bmy_02378T0/1-785 ---------- ---------- ---------- ---------- ---------- BACU009881/1-1270 PIYLQPQSFS SIHGINEKIS VQAYETQVKF IFEFIQNADA DPRPVPHLHE ENSP00000356102/1-887 T--------- ---------- ---------- ---------- ---------- ENSBTAP00000001818/1-787 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSTTRP00000014789/1-878 - bmy_02378T0/1-785 - BACU009881/1-1270 L ENSP00000356102/1-887 - ENSBTAP00000001818/1-787 -