KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:15:32 2014 Check: 00 .. Name: ENSP00000387982/1-378 Len: 432 Check: 6368 Weight: 1.00 Name: ENSBTAP00000001824/1-374 Len: 432 Check: 5738 Weight: 1.00 Name: ENSTTRP00000005478/1-364 Len: 432 Check: 9428 Weight: 1.00 Name: bmy_10349T0/1-337 Len: 432 Check: 7768 Weight: 1.00 Name: BACU016062/1-414 Len: 432 Check: 4778 Weight: 1.00 // 1 50 ENSP00000387982/1-378 ----MDPGDD WLVESLRLYQ DF------YA FDLSG----- -----ATRVL ENSBTAP00000001824/1-374 ATVAMEPAED WLVESLRLYQ DF------HA FDLSG----- -----ATRVL ENSTTRP00000005478/1-364 ---------- --------YQ DF------HA FDLSG----- -----ATRVL bmy_10349T0/1-337 ---------- ---------- -M------PC LALKN----- -----HS--S BACU016062/1-414 --MTLRARGA RLLGGLLLFA LLAAGAAPFS WDLPEPRSRA SKIRVHPRGN 51 100 ENSP00000387982/1-378 EWIDD----- -----KGVFV AGYESLK--- ------KNEI LHLK------ ENSBTAP00000001824/1-374 EWIGD----- -----KGILV AGYDSLK--- ------KNEI LHLI------ ENSTTRP00000005478/1-364 EWIGD----- -----KGVLV AGYESLK--- ------KNEI LHLI------ bmy_10349T0/1-337 SWNSG----- -------AQP RGTQPLF--- -------WEL EGLL------ BACU016062/1-414 LWATGHFMGK KSLEPPSPSL LGTAPLISLR DQRLQLSHDL LRILLQKKAL 101 150 ENSP00000387982/1-378 -LPLRLSVKE NKGLFPERDF KVRHGGFSDR SIFDLKHVPH TRLLVTSGLP ENSBTAP00000001824/1-374 -LPLRLSVKE NQGLFPERDF KVQHGGFSDR SVCDLKHVPD TRLLVTSGPP ENSTTRP00000005478/1-364 -LPLRLSVKE NQGLFPERDF KVRHGGFSDR SVFDLKYVPD TRLLVTSGLP bmy_10349T0/1-337 ---------- --GLFPERDF KVRHGGFSDR SVFDLKYVPD TRLLVTSGLP BACU016062/1-414 GMSLSGPAPH TQGLLPERDF KVRHGGFSDR SVFDLKYVPD TRLLVTSGLP 151 200 ENSP00000387982/1-378 GCYLQVWQVA EDSDVIKAVS TIAVHEKEES LWPRVAVFST LAPGVLHGAR ENSBTAP00000001824/1-374 GSYLQVWQLA EDSDVIRAVS TIDVHEREEP LWPRVAIFPS VAPGVLHGTR ENSTTRP00000005478/1-364 GCYLQVWQVA EDSDVIKAVS TIDVHEKEGR LWPRMAIFSS AAPGVLHGAR bmy_10349T0/1-337 GCYLQVWQIA EDSDVIKAVS TIDVCEKEGC LWPRVAIFSS AAPGVLHGAR BACU016062/1-414 GCYLQVWQIA EDSDVIKAVS TIDVREKEGR LWPRVAIFSS AAPGVLHGAR 201 250 ENSP00000387982/1-378 LRSLQVVDLE SRKTTYTSDV SDSEELSSLQ VLDADTFAFC CASGRLGLVD ENSBTAP00000001824/1-374 LSSLKVVDLH SQKTMYTSGV SDDDVLSSLQ VLDTDTFAFC CSSGRLGLVD ENSTTRP00000005478/1-364 LSSLKVVDLE SQKTTYSSGI SDDELLSSLQ VLDADTFAFC CTSGRLGLVD bmy_10349T0/1-337 LSSLKVVDLE SQKTTYSSGV SDGELLSSLQ VLDADTFAFC CTSGRLGLVD BACU016062/1-414 LSSLKVVDLE SQKTTYSSGV SDGELLSSLQ VLDADTFAFC CTSGRLGLVD 251 300 ENSP00000387982/1-378 TRQKWAPLEN RSPGPGSGGE RWCAEVGSWG QGPGPSIASL GSDGRLCLLD ENSBTAP00000001824/1-374 TRQRWAPSEN LSPGPGSTGR QWCAEAG--G RGPGPSIARL GSDGQLCLLD ENSTTRP00000005478/1-364 TRQKWTPSEN FRPGSGSAGG RWCAEAG--G RGPGPSIASL GSDGQLCLLD bmy_10349T0/1-337 TRQKWTPSEN LRPGSGSAGG RWCAEAG--G RGPGPSIASL GSDGQLCLLD BACU016062/1-414 TRQKWTPSEN LRPSSGSAGG RWCAEAG--G RGPGPSIASL GSDGQLCLLD 301 350 ENSP00000387982/1-378 PRDLCHPVSS VQCPVSVPSP DPELLRVTWA PGLKNCLAIS GFDGTVQVYD ENSBTAP00000001824/1-374 PRDLCQPVSS VQCPVSMPSP EPELLRVTWA PGLDNCLAIS GFDGTVQVYD ENSTTRP00000005478/1-364 PRDLCQPVSL VQCPVSMPSP DPELLRVTWA PGLDNCLAIS GFDGTVQVYD bmy_10349T0/1-337 PRDLCQPVSL VQCPVSTPSP DPELLRVTWA PGLDNSLAIS GFDGTVQVYD BACU016062/1-414 PRDLCQPVSL VQCPVSTPSP DPELLRVTWA PGLDNCLAIS GFDGTVQVYD 351 400 ENSP00000387982/1-378 ATSWDGTRSQ DGTRSQVEPL FTHRGHIFLD GNGMDPAPLV TTHTWHPCRP ENSBTAP00000001824/1-374 VTSW------ AGVGRQVEPL FTHRGHIFLD DSGMDPAPLV TTHTWHPYKP ENSTTRP00000005478/1-364 VTSW------ GGMGRQVEPL FTHKGHIFLD GNGMDTAPLV TTHTWHPCKP bmy_10349T0/1-337 VTSW------ GGMGRQVEPL FTHKGHIFLD GNGIDTAPLV TTHTWHPCKP BACU016062/1-414 VTSW------ GGTGRQVEPV FTHKGHIFLD GNGIDTAPLV TTHTWHPCKP 401 450 ENSP00000387982/1-378 RTLLSATNDA SLHVWDWVDL CAPR------ -- ENSBTAP00000001824/1-374 RTVLSAASDA SLHVWDWVDP CASR------ -- ENSTTRP00000005478/1-364 RTLLSAASDA SLHVWDWVDL CCPLTPASFR PG bmy_10349T0/1-337 RTLLSAASDA SLHVWDWVDL HAAR------ -- BACU016062/1-414 RTLLSAASDA SLHVWDWVDL HAAC------ --