KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:15:35 2014 Check: 00 .. Name: ENSTTRP00000006931/1-784 Len: 828 Check: 1887 Weight: 1.00 Name: bmy_08795T0/1-631 Len: 828 Check: 5960 Weight: 1.00 Name: ENSP00000418096/1-748 Len: 828 Check: 9204 Weight: 1.00 Name: BACU003013/1-756 Len: 828 Check: 2539 Weight: 1.00 Name: ENSBTAP00000001840/1-754 Len: 828 Check: 3370 Weight: 1.00 // 1 50 ENSTTRP00000006931/1-784 MLQEPGPELR PGRQDPGLER DASWLDPQEH PPAPPTMTSP VSSAPPGEAL bmy_08795T0/1-631 ---------- ---------- ---------- -MKPGEDAAC DVTAPPRGVM ENSP00000418096/1-748 ---------- ---------- ---------- -MIP-----A ASSTPPGDAL BACU003013/1-756 ---------- ---------- ---------- -MIP-----P VSSAPPGEAL ENSBTAP00000001840/1-754 ---------- ---------- ---------- -MIP-----P ASSAPPGEAL 51 100 ENSTTRP00000006931/1-784 FPSLTPQDLW RPPIAGYSGS MTRHISHRAN NFKRHPKRRK CIRPSPPPPP bmy_08795T0/1-631 LQEQ------ RRAGGGRAGT RAANGAGRTP ASERDASWLD PQVPPFPPVP ENSP00000418096/1-748 FPSVAPQDFW RSQVTGYSGS VTRHLSHRAN NFKRHPKRRK CIRPSPPPPP BACU003013/1-756 FPSLTPQDCW RPPVAGYSGS MTQHISHRAN NFKRHPKRRK CIRPSPPPPP ENSBTAP00000001840/1-754 FPALAPQDFW RPPVTGYSGS VTQHISHRAN NFKRHPKRRK CIRPSPPPPP 101 150 ENSTTRP00000006931/1-784 NTPCPVELVG FGDLHPQRSF RELLFNGCVL FGIEFSYAME TAYVTPVLLQ bmy_08795T0/1-631 SAQLPGSVLG ASRLRPQGNQ SARIGTG--- ---------- ---------- ENSP00000418096/1-748 NTPCPLELVD FGDLHPQRSF RELLFNGCIL FGIEFSYAME TAYVTPVLLQ BACU003013/1-756 NTPCPIELVD FGDLHPQRSF RELLFNGCVL FGIEFSYAME TAYVTPVLLQ ENSBTAP00000001840/1-754 NTPCPIELVD FGDLHPQRSF RELLFNGSVL FGIEFSYAME TAYVTPVLLQ 151 200 ENSTTRP00000006931/1-784 MGLPDQLYSL VWFVSPILGF ILQPLLGAWS DRCTSRFGRR RPFILVLAIG bmy_08795T0/1-631 ---------- --------GF LLQPLLGAWS DRCTSRFGRR RPFILVLAIG ENSP00000418096/1-748 MGLPDQLYSL VWFISPILGF LLQPLLGAWS DRCTSRFGRR RPFILVLAIG BACU003013/1-756 MGLPDQLYSL VWFVSPI--- ---------- ---------- --------LG ENSBTAP00000001840/1-754 MGLPDQLYSL VWFISPILGF LLQPLLGAWS DRCTSRFGRR RPFILVLAIG 201 250 ENSTTRP00000006931/1-784 ALLGLSLLLN GRDIGTALAD TAHDHKWGIL LTVCGVALMD FSADSADSPS bmy_08795T0/1-631 ALLGLSLLLN GRDIGTALAD TAHDHKWGIL LTVCGVALMD FSADSADSPS ENSP00000418096/1-748 ALLGLSLLLN GRDIGIALAD VTGNHKWGLL LTVCGVVLMD FSADSADNPS BACU003013/1-756 ALLGLSLLLN GRDIGTALAD TAHDHKWGIL LTVCGVALMD FSADSADSPS ENSBTAP00000001840/1-754 ALLGLSLLLN GRDIGTALAD TASDHKWGIL LTVCGVVLMD FSADSADNPS 251 300 ENSTTRP00000006931/1-784 HAYMMDVCSP ADQDRGLNIH ALLAXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_08795T0/1-631 HAYMMDVCSP ADQDRGLTIH ALLAGLGGGF GYVVGGIHWD KTGFGRALGG ENSP00000418096/1-748 HAYMMDVCSP ADQDRGLNIH ALLAGLGGGF GYVVGGIHWD KTGFGRALGG BACU003013/1-756 HAYMMDVCSP ADQDRGLTIH ALLAGLGGGF GYVVGGIHWD ETGFGRALGG ENSBTAP00000001840/1-754 HAYMMDVCSP ADQDRGLNIH ALLAGLGGGF GYVVGGIHWD KTSFGRALGG 301 350 ENSTTRP00000006931/1-784 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_08795T0/1-631 QLRVIYVFTA VILSITTVLT LVSIPERPLR PPGEKRPAMK SPSLPLPPSP ENSP00000418096/1-748 QLRVIYLFTA VTLSVTTVLT LVSIPERPLR PPSEKRAAMK SPSLPLPPSP BACU003013/1-756 QLRVIYVFTA VILSTTTVLT LVSIPERPLR PPGEKRPAMK SPSLPLPPSP ENSBTAP00000001840/1-754 QLRVIYIFTA VILSITTVLT LVSIPERPLR PPGEKKPAMK SPSLPLPPSP 351 400 ENSTTRP00000006931/1-784 XXXXXXXX-- --XX-XXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_08795T0/1-631 PVLGEEGA-- --PC-PPATG LHASLSSPIS PLSPLTPKYG SFISRDSSLT ENSP00000418096/1-748 PVLPEEG--- --PGDSLPSH TATNFSSPIS PPSPLTPKYG SFISRDSSLT BACU003013/1-756 PVLGEEGA-- --PC-PPAAG LHAGLSSPIS PLSPLTPKYG SFISRDSSLT ENSBTAP00000001840/1-754 PVLCEEGAGQ TVPCPPPGPS LYASFSSPIS PLSPLTPKYG SFISRDSSLT 401 450 ENSTTRP00000006931/1-784 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_08795T0/1-631 GINEFASSFA ASSIDSVLID CFTGGHDGHL AIPGSAPRQA ISVSFPRAPD ENSP00000418096/1-748 GISEFASSFG TANIDSVLID CFTGGHDSYL AIPGSVPRPP ISVSFPRAPD BACU003013/1-756 GISDFASSFA ASSIDGVLID CFTGGHDGHL AIPGSAPRQA VSVSFPRAPD ENSBTAP00000001840/1-754 GINEFASSFA TSNIDSVLID CFTGGHDSYL AIPGSLPRQA ISVSFPRAPD 451 500 ENSTTRP00000006931/1-784 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_08795T0/1-631 GFCHRDRGLG DRRDVALATG PDGDVLRVGS LDTSKPRSAG ILKRPQTLAI ENSP00000418096/1-748 GFYRQDRGLL EGREGALTSG CDGDILRVGS LDTSKPRSSG ILKRPQTLAI BACU003013/1-756 GFCHRDRGLG DRRDVALATG PDGNVLRVGS LDTSKPRSAG ILKRPQTLAI ENSBTAP00000001840/1-754 GFYRQDRGLG DRRDVTLAAG PDGDVLRVGS LDTSKPRSAG ILKRPQTLAI 501 550 ENSTTRP00000006931/1-784 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_08795T0/1-631 PDAAGGGGPD SSRRRNVTFS QQVANILLNG VKYESELTGP SEPSGQPLSM ENSP00000418096/1-748 PDAAGGGGPE TSRRRNVTFS QQVANILLNG VKYESELTGS SERAEQPLSV BACU003013/1-756 PDAAGGGGPD SSRRRNVTFS QQVANILLNG VKYESELTGP SEPSGQPLSM ENSBTAP00000001840/1-754 PDVAGGSGPD TSRRRNVTFS QQVANILLNG VKYESELTGS SEPSGQPLSM 551 600 ENSTTRP00000006931/1-784 XXXXXXXXXX XXXXXXXXXX XXXXWLSFEG MLLFYTDFMG EVVFQGDPKA bmy_08795T0/1-631 RYLCFTICNM PKALRHLCVN HFLGWLSFEG MLLFYTDFMG EVVFQGDPKA ENSP00000418096/1-748 GRLCSTICNM PKALRTLCVN HFLGWLSFEG MLLFYTDFMG EVVFQGDPKA BACU003013/1-756 RYLCFTICNM PKALRHLCVN HFLGWLSFEG MLLFYTDFMG EVVFQGDPKA ENSBTAP00000001840/1-754 RHLCFTICNM PRALRHLCVN HFLGWLSFEG MLLFYTDFMG EVVFQGDPKA 601 650 ENSTTRP00000006931/1-784 PHTSEAYQKY NSGVTVGCWG MCIYAFSAAF YSAILEKLEE HLSVRTLYFI bmy_08795T0/1-631 PHTSEAYQKY NSGVTVGCWG MCIYAFSAAF YSALLEKLEE RLSVRTLYFI ENSP00000418096/1-748 PHTSEAYQKY NSGVTMGCWG MCIYAFSAAF YSAILEKLEE FLSVRTLYFI BACU003013/1-756 PHTSEAYQKY NSGVTVGCWG MCIYAFSAAF YSALLEKLEE RLSVRTLYFI ENSBTAP00000001840/1-754 PHTSEAYQKY NSGVTVGCWG MCIYAFSAAF YSAILEKLEE HLSVRTLYFI 651 700 ENSTTRP00000006931/1-784 AYLAFGLGTG LATLSRNLYV VLSLCITYGI LFSTLCTLPY SLLCDYYQSK bmy_08795T0/1-631 AYLAFGLGTG LATLSRNLYV VLSLCITYGI LFSTLCTLPY SLLCDYYQSK ENSP00000418096/1-748 AYLAFGLGTG LATLSRNLYV VLSLCITYGI LFSTLCTLPY SLLCDYYQSK BACU003013/1-756 AYLAFGLGTG LATLSRNLYV VLSLCITYGI LFSTLCTLPY SLLCDYYQSK ENSBTAP00000001840/1-754 AYLAFGLGTG LATLSRNLYV VLSLCVTYGV LFSTLCTLPY SLLCDYYQSK 701 750 ENSTTRP00000006931/1-784 ---------- ---------- ---------- --------QX XXXXXXXXXX bmy_08795T0/1-631 ---------- ---------- ---------- ---------- ---------- ENSP00000418096/1-748 ---------- ---------- ---------- --------KF AGSSADGTRR BACU003013/1-756 QSWPGSLCTW GLEDVSCWAG VPGPRAAGGL VRLTHVSGQF AGSSADGTRR ENSBTAP00000001840/1-754 ---------- ---------- ---------- --------QF AGSSADGTRR 751 800 ENSTTRP00000006931/1-784 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX VGSANGVMYF SSLVSFLGCL bmy_08795T0/1-631 --QVSAGLLA S--------- ----GPTSR- ---------- ---------- ENSP00000418096/1-748 GMGVDISLLS CQYFLAQILV SLVLGPLTSA VGSANGVMYF SSLVSFLGCL BACU003013/1-756 GMGVDISLLS CQYFLAQILV SLVLGPLTSA VGSANGVMYF SSLVSFLGCL ENSBTAP00000001840/1-754 GMGVDISLLS CQYFLAQILV SLVLGPLTSA VGSANGVMYF SSLVSFLGCL 801 850 ENSTTRP00000006931/1-784 YSCLFVVYEI PPGDAATAEE HRPL-LNV bmy_08795T0/1-631 ---------- ---------- -------- ENSP00000418096/1-748 YSSLFVIYEI PPSDAAD-EE HRPLLLNV BACU003013/1-756 YSSLFVVYEI PPSDAATAEE HRPLXXXX ENSBTAP00000001840/1-754 YSSLFVVYEI PPSDASTTEE HRPLLLNV