KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:15:36 2014 Check: 00 .. Name: ENSTTRP00000010568/1-738 Len: 891 Check: 7729 Weight: 1.00 Name: bmy_10897T0/1-687 Len: 891 Check: 8488 Weight: 1.00 Name: ENSP00000436500/1-738 Len: 891 Check: 2475 Weight: 1.00 Name: BACU017374/1-726 Len: 891 Check: 4568 Weight: 1.00 Name: ENSBTAP00000001849/1-877 Len: 891 Check: 4904 Weight: 1.00 // 1 50 ENSTTRP00000010568/1-738 ---------- ---------- ---------- ---------M KGFKL----- bmy_10897T0/1-687 ---------- ---------- ---------- ---------- ---------- ENSP00000436500/1-738 ---------- ---------- ---------- ---------M KGFKL----- BACU017374/1-726 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001849/1-877 MPAANMMENL QPPALQVPEP RGAPEGSPVW SSSSTPTLRR RRFKMRRTKN 51 100 ENSTTRP00000010568/1-738 ---------- ---------- ---------- ---------- ---------- bmy_10897T0/1-687 ---------- ---------- ---------- ---------- ---------- ENSP00000436500/1-738 ---------- ---------- ---------- ---------- ---------- BACU017374/1-726 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001849/1-877 VQEPSLEAGL SGDLPGVLAP GKEFLQLPSI EITPSSDEDT PWSNCSTPSA 101 150 ENSTTRP00000010568/1-738 ---------- ---------- ---------- ---------- ---------S bmy_10897T0/1-687 ---------- ---------- ---------- ---------- ---------- ENSP00000436500/1-738 ---------- ---------- ---------- ---------- ---------S BACU017374/1-726 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001849/1-877 SPRRKRFLLR KWLRVRERKE CSESSSQQSS QQSSHDDDSS RFLSPRVREE 151 200 ENSTTRP00000010568/1-738 CTASNSNRST LACSLILRKR SRSPLSQNPD GDSMVEKGSD HSSDKSSSTP bmy_10897T0/1-687 ---------T QAGAP----- ---------- ---------- ----RAPSSP ENSP00000436500/1-738 CTASNSNRST PACSPILRKR SRSPTPQNQD GDTMVEKGSD HSSDKSPSTP BACU017374/1-726 -TASNSNRST PACSPILRKR SRSPPAQSPD GDTMVEKGSD HSSDKSPSTP ENSBTAP00000001849/1-877 STASNSNRST PACSPILRKR SRSPTPQNVD GDTMVEKGSD HSSDKSPSTP 201 250 ENSTTRP00000010568/1-738 EQGVQRSCLS QSGRSGGKNS KXXXXXXXVL SPTYKQRNED FRKLFKQLPD bmy_10897T0/1-687 T--------- ---REPGNIL LTLAIVTQVL SPTYKQRNED FRKLFKQLPD ENSP00000436500/1-738 EQGVQRSCSS QSGRSGGKNS KKSQSWYNVL SPTYKQRNED FRKLFKQLPD BACU017374/1-726 EQGVQRSCSS QSGRSAGKNS KKSQSWYNVL SPTYKQRNED FRKLFKQLPD ENSBTAP00000001849/1-877 EQGVQRSCSS QSGRSGGKNS KKSQSWYNVL SPTYKQRNED FRKLFKQLPD 251 300 ENSTTRP00000010568/1-738 TERLIVDYSC ALQRDILLQG RLYLSENWIC FYSNIFRWET LLTVRLKDIC bmy_10897T0/1-687 TERLIVDYSC ALQRDILLQG RLYLSENWIC FYSNIFRWET LLTVRLKDIC ENSP00000436500/1-738 TERLIVDYSC ALQRDILLQG RLYLSENWIC FYSNIFRWET LLTVRLKDIC BACU017374/1-726 TERLIVDYSC ALQRDILLQG RLYLSENWIC FYSNIFRWET LLTVRLKDIC ENSBTAP00000001849/1-877 TERLIVDYSC ALQRDILLQG RLYLSENWIC FYSNIFRWET LLTVRLKDIC 301 350 ENSTTRP00000010568/1-738 SMTKEKTARL IPNAIQVCTD SEKHFFTSFG ARDRTYMMMF RLWQNALLEK bmy_10897T0/1-687 SMTKEKTARL IPNAIQVCTD SEKHFFTSFG ARDRTYMMMF RLWQNALLEK ENSP00000436500/1-738 SMTKEKTARL IPNAIQVCTD SEKHFFTSFG ARDRTYMMMF RLWQNALLEK BACU017374/1-726 SMTKEKTARL IPNAIQVCTD SEKHFFTSFG ARDRTYMMMF RLWQNALLEK ENSBTAP00000001849/1-877 SMTKEKTARL IPNAIQVCTD SEKHFFTSFG ARDRTYMMMF RLWQNALLEK 351 400 ENSTTRP00000010568/1-738 PLCPKELWHF VHQCYGNELG LTSDDEDYVP PDDDFNTMGY CEEIPVEENE bmy_10897T0/1-687 PLCPKELWHF VHQCYGNELG LTSDDEDYVP PDDDFNTMGY CEEIPVEENE ENSP00000436500/1-738 PLCPKELWHF VHQCYGNELG LTSDDEDYVP PDDDFNTMGY CEEIPVEENE BACU017374/1-726 PLCPKELWHF VHQCYGNELG LTSDDEDYVP PDDDFNTMGY CEEIPVEENE ENSBTAP00000001849/1-877 PLCPKELWHF VHQCYGNELG LTSDDEDYVP PDDDFNTMGY CEEIPVEENE 401 450 ENSTTRP00000010568/1-738 VNDSSSKSSX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_10897T0/1-687 VNDSSSKSSI ETRPDASPQL PKKSITNSTL TSTGSSEAPV SFDGLPLEEE ENSP00000436500/1-738 VNDSSSKSSI ETKPDASPQL PKKSITNSTL TSTGSSEAPV SFDGLPLEEE BACU017374/1-726 VNDSSSKSSI ETKPDASPQL PKKSITNSTL TSTGSSEAPV SFDGLPLEEE ENSBTAP00000001849/1-877 VNDSSSKSSI ETKPDASPQL PKKSITNSTL TSTGSSEAPV SFDGLPLEEE 451 500 ENSTTRP00000010568/1-738 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_10897T0/1-687 VLEGDGSLEK ELAIDSIIGE KIEIIAPVNS PSLDFNDNED IPTELSDSSD ENSP00000436500/1-738 ALEGDGSLEK ELAIDNIMGE KIEMIAPVNS PSLDFNDNED IPTELSDSSD BACU017374/1-726 VLEGDGSLEK ELAIDSVIGE KIEIIAPVNS PSLDFNDNED IPTELSDSSD ENSBTAP00000001849/1-877 VLEGDGSLEK ELAIDNIIGE KIEIIAPVNS PSLDFNDNED IPTELSDSSD 501 550 ENSTTRP00000010568/1-738 XXXXXEVQAF YEDLSGRQYV NEVFNFSVDK LYDLLFTDSP FQRDFMEQRR bmy_10897T0/1-687 THDEGEVQAF YEDLSGRQYV NEVFNFSVDK LYDLLFTDSP FQRDFMEQRR ENSP00000436500/1-738 THDEGEVQAF YEDLSGRQYV NEVFNFSVDK LYDLLFTNSP FQRDFMEQRR BACU017374/1-726 THDEGEVQAF YEDLSGRQYV NEVFNFSVDK LYDLLFTNSP FQRDFMEQRR ENSBTAP00000001849/1-877 THDEGEVQAF YEDLSGRQYV NEVFNFSVDK LYDLLFTDSP FQRDFMEQRR 551 600 ENSTTRP00000010568/1-738 FSDIIFHPWK KEDNGNQSRV ILYTITLTNP LAPKTATVRE T--------- bmy_10897T0/1-687 FSDIIFHPWK KEDNGNQSRV ILYTITLTNP LAPKTATVRE TQPRPTTLSS ENSP00000436500/1-738 FSDIIFHPWK KEENGNQSRV ILYTITLTNP LAPKTATVRE T--------- BACU017374/1-726 FSDIIFHPWK KEDNGNQSRV ILYTITLTNP LAPKTATVRE T--------- ENSBTAP00000001849/1-877 FSDIIFHPWK KEENGNQSRV ILYTITLTNP LAPKTATVRE T--------- 601 650 ENSTTRP00000010568/1-738 -QXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_10897T0/1-687 PQTMYKASQE SECYVVDAEV LTHDVPYHDY FYTINRYTLT RVARNKSRLR ENSP00000436500/1-738 -QTMYKASQE SECYVIDAEV LTHDVPYHDY FYTINRYTLT RVARNKSRLR BACU017374/1-726 -QTMYKASQE SECYVVDAEV LTHDVPYHDY FYTINRYTLT RVARNKSRLS ENSBTAP00000001849/1-877 -QTMYKASQE SECYVIDAEV LTHDVPYHDY FYTINRYTLT RVARNKSRLR 651 700 ENSTTRP00000010568/1-738 VSTELRYRKQ PWGLVKTFIE KNFWSGLEDY FRHLESELTK TESTYLAELH bmy_10897T0/1-687 VSTELRYRKQ PWGLVKTFIE KNFWSGLEDY FRHLESELTK TESTYLAELH ENSP00000436500/1-738 VSTELRYRKQ PWGLVKTFIE KNFWSGLEDY FRHLESELAK TESTYLAEMH BACU017374/1-726 VPTELRYRKQ PWGLVKTFIE KNFWSGLEDY FRHLESELTK TESTYLAELH ENSBTAP00000001849/1-877 VSTELRYRKQ PWGLVKTFIE KNFWSGLEDY FRHLESELTK TESTYLAEMH 701 750 ENSTTRP00000010568/1-738 RQSPKEKASK APSVRRRKRP HAHLRVPHLE EVMSPVTTPT DEDVGHRIKH bmy_10897T0/1-687 RQSPKEKAXK PPSVRRRKRP HAHLRVPHLE EAMSPVTTPT DEDVGHRIKH ENSP00000436500/1-738 RQSPKEKASK TTTVRRRKRP HAHLRVPHLE EVMSPVTTPT DEDVGHRIKH BACU017374/1-726 RQSPKEKASK PPSVRRRKRP HAHLRVPHLE EAMSPVTTPT DEDVGHRIKH ENSBTAP00000001849/1-877 RQSPKEKASK PPTVRRRKRP HAHLRVPHLE EVMSPVTTPT DEDVGHRIKH 751 800 ENSTTRP00000010568/1-738 VAGSTQTRHI PEDSPNGFHL QSVSKLLLVI SCVRLLSLVL LVVLNMMLFY bmy_10897T0/1-687 VAGSTQTRHI PEDGPNGFHL QSVSKLLLVI SCV----LVL LVILNMMLFY ENSP00000436500/1-738 VAGSTQTRHI PEDTPNGFHL QSVSKLLLVI SCVICFSLVL LVILNMMLFY BACU017374/1-726 VAGSTQTRHI PEDGPSGFHL QSVSKLLLVI SCV----LVL LVILNMMLFY ENSBTAP00000001849/1-877 VAGSTQTRHI PEDGPSGFHL QSVSKLLLVI SCV----LVL LVILNVMLFY 801 850 ENSTTRP00000010568/1-738 KLWMLEYTTQ TLTAWQGLRL QDRLPQSQTE WAQLLESQQK YHDTELQKWR bmy_10897T0/1-687 KLWMLEYTTQ TLTAWQGLRL QERLPQSQTE WAQLLESQQK YHDTELQKWR ENSP00000436500/1-738 KLWMLEYTTQ TLTAWQGLRL QERLPQSQTE WAQLLESQQK YHDTELQKWR BACU017374/1-726 KLWMLEYTTQ TLTAWQGLRL QERLPQSQTE WAQLLESQQK YHDTELQKWR ENSBTAP00000001849/1-877 KLWMLEYTTQ TLTAWQGLRL QERLPQSQTE WAQLLESQQK YHDTELQKWR 851 900 ENSTTRP00000010568/1-738 EIIKSSVMLL DQMKDSLINL QNGIRARDYT SESEEKRNRY H bmy_10897T0/1-687 EIIKSSVMLL DQMKDSLINL QNGIRARDYT SESEEKRNRY H ENSP00000436500/1-738 EIIKSSVMLL DQMKDSLINL QNGIRSRDYT SESEEKRNRY H BACU017374/1-726 EIIKSSVMLL DQMKDSLINL QNGIRARDYT SESEEKRNRY H ENSBTAP00000001849/1-877 EIIKSSVMLL DQMKDSLINL QNGIRSRDYT SESEEKRNRY H