KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:15:39 2014 Check: 00 .. Name: ENSP00000234420/1-1360 Len: 1367 Check: 5750 Weight: 1.00 Name: ENSBTAP00000001867/1-1360 Len: 1367 Check: 799 Weight: 1.00 Name: bmy_19511T0/1-1338 Len: 1367 Check: 6583 Weight: 1.00 Name: ENSTTRP00000007640/1-1353 Len: 1367 Check: 218 Weight: 1.00 Name: BACU019397/1-1360 Len: 1367 Check: 3124 Weight: 1.00 // 1 50 ENSP00000234420/1-1360 MSRQSTLYSF FPKSPALSDA NKASARASRE GGRAAAAPGA SPSP--G-GD ENSBTAP00000001867/1-1360 MSRQSTLFSF FPKSPAVNNA NKAPVRASSG SSAAAAATGA SPSP--G-GD bmy_19511T0/1-1338 ---------- ---------- MPAKARSGPQ VKAPPPLPPG PPLPQAGMRP ENSTTRP00000007640/1-1353 MSRQSTLYSF FPKSPALNNA SKDPVRASSE SAAAAATGAS PPSP--G-GD BACU019397/1-1360 MSRQSTLYSF FPKSPALNND SKGPVGASSE SAAAAAT-GA SPSP--G-ED 51 100 ENSP00000234420/1-1360 AAWSEAGPGP --RPLARSAS PPKAKNLNGG LRRSVAPAAP TS-CDFSPGD ENSBTAP00000001867/1-1360 AAWNEA--GP --EPLAGTTS RAEARNLNGG LRKSASPAVP ASSCDFSPGD bmy_19511T0/1-1338 GARQGLGRGP WRAPLRG--- PRRGTSTEGC GRRQ-----P LRSCDFSPGD ENSTTRP00000007640/1-1353 AAWSEAGPGP --GPLAGSTS RAEARNLNGG LRKSAAPAVP ASSCDFSPGD BACU019397/1-1360 AAWSEAGPGP --GPLAGSTS RAEARNLNGG LRKSAAPAVP ASSCDFSPGD 101 150 ENSP00000234420/1-1360 LVWAKMEGYP WWPCLVYNHP FDGTFIREKG KSVRVHVQFF DDSPTRGWVS ENSBTAP00000001867/1-1360 LVWAKMEGYP WWPCLVYNHP FDGTFIREKG KSARVHVQFF DDSPTRGWVS bmy_19511T0/1-1338 LVWAKMEGYP WWPCLVYNHP FDGTFIREKG KSARVHVQFF DDSPTRGWVS ENSTTRP00000007640/1-1353 LVWAKMEGYP WWPCLVYNHP FDGTFIREKG KSARVHVQFF DDSPTRGWVS BACU019397/1-1360 LVWAKMEGYP WWPCLVYNHP FDGTFIREKG KSARVHVQFF DDSPTRGWVS 151 200 ENSP00000234420/1-1360 KRLLKPYTGS KSKEAQKGGH FYSAKPEILR AMQRADEALN KDKIKRLELA ENSBTAP00000001867/1-1360 RRLLKPYTGS HSKEAQKGGH FYSAKPEILR AMQRADEALN KDKIKRLELA bmy_19511T0/1-1338 RRLLKPYTGS KSKEAQKGGH FYSSKPEILR AMQRADEALN KDKIKRLELA ENSTTRP00000007640/1-1353 RRLLKPYTGS KSKEAQKGGH FYSSKPEILR AMQRADEALN KDKIKRLELA BACU019397/1-1360 RRLLKPYTGS KSKEAQKGGH FYSSKPEILR AMQRADEALN KDKIKRLELA 201 250 ENSP00000234420/1-1360 VCDEPSEPEE EEEMEVGTTY VTDKSEEDNE IESEEEVQPK TQGSRRSSRQ ENSBTAP00000001867/1-1360 VCDEPSEPEE EEETEVGATY TSDKSEEEND IESEEEVRPK VQGSRRSSRQ bmy_19511T0/1-1338 VCDEPSEPEE EEETEAGATY ASDKSEEENE IESEEEVRPK VQGSRRSSRQ ENSTTRP00000007640/1-1353 VCDEPSEPEE EEETEAGATY ASDKSEEENE IESEEEVRPK VQGSRRSSRQ BACU019397/1-1360 VCDEPSEPEE EEEMEAGATY ASDKSEEENE IESEEEVRPK VQGSRRSSRQ 251 300 ENSP00000234420/1-1360 IKKRRVISDS ESDIGGSDVE FKPDTKEEGS SDEISSGVGD SESEGLNSPV ENSBTAP00000001867/1-1360 IKKRRVISDS ESDVGGSDVE FKPDTKEEAS SDEISSGVGD SDSEGLDTPV bmy_19511T0/1-1338 IKKRRVISDS ESDIGGSDVE FKPDAKEEGS SDEISSGVGD SDSEGLDSPV ENSTTRP00000007640/1-1353 IKKRRVISDS ESDIGGSDVE FKPDAKEEGS SDEISSGVGD SDSEGLDSPV BACU019397/1-1360 IKKRRVISDS ESDIGGSDVE FKPDAKEEGS SDEISSGVGD SDSEGLDSPV 301 350 ENSP00000234420/1-1360 KVARKRKRMV TGNGSLKRKS SRKETPSATK QATSISSETK NTLRAFSAPQ ENSBTAP00000001867/1-1360 KVAPKRKRMV TGNGSLKRKS SRKEMPSATK RATGISSETK NTLSAFSVPQ bmy_19511T0/1-1338 KVAPKRKRMV TGNGSLKRKS SRKEMPSATK RATGISSETK NTLSAFSAPQ ENSTTRP00000007640/1-1353 KVAPKRKRMI TGNGSLKRKS SRKEMPSATK RATGISSETK NTLSAFSAPQ BACU019397/1-1360 KVAPKRKRMV TGNGSLKRKS SRKEMPSATK RATGISSETK NTLSAFSAPQ 351 400 ENSP00000234420/1-1360 NSESQAHVSG GGDDSSRPTV WYHETLEWLK EEKRRDEHRR RPDHPDFDAS ENSBTAP00000001867/1-1360 NSEPQAHISG GCDDSNRPTV WYHETLEWLK EEKRRDVHRR RPDHPDFDAS bmy_19511T0/1-1338 NSESQAHISG GCDDSSRPTT WYHETLEWLK EEKRRDTHRR RPDHPDFDAS ENSTTRP00000007640/1-1353 NSESQAHVSG GCDDSSRPTI WYHETLEWLK EEKRRDKHRR RPDHPDFDAS BACU019397/1-1360 NSESQAHISG GCDDSSRPTI WYHETLEWLK EEKRRDTHRR RPDHPDFDAS 401 450 ENSP00000234420/1-1360 TLYVPEDFLN SCTPGMRKWW QIKSQNFDLV ICYKVGKFYE LYHMDALIGV ENSBTAP00000001867/1-1360 TLYVPEDFLN SCTPGMRKWW QIKSQNFDLV IFYKVGKFYE MYHMDALIGV bmy_19511T0/1-1338 TLYVPEDFLN SCTPGMRKWW QIKSQNFDLV IFYKVGKFYE LYHMDALIGV ENSTTRP00000007640/1-1353 TLYVPEDFLN SCTPGMRKWW QIKSQNFDLV IFYKVGKFYE LYHMDALTGV BACU019397/1-1360 TLYVPEDFLN SCTPGMRKWW QIKSQNFDLV IFYKVGKFYE LYHMDALIGV 451 500 ENSP00000234420/1-1360 SELGLVFMKG NWAHSGFPEI AFGRYSDSLV QKGYKVARVE QTETPEMMEA ENSBTAP00000001867/1-1360 SELGLVFMKG NWAHSGFPEI AFGRYSDSLV QKGYKVARVE QTETPEMMEA bmy_19511T0/1-1338 SELGLVFMKG NWAHSGFPEI AFGRYSDSLV QKGYKVARVE QTETPEMMEA ENSTTRP00000007640/1-1353 SELGLVFMKG NWAHSGFPEI AFGRYSDSLV QKGYKVARVE QTETPEMMEA BACU019397/1-1360 SELGLVFMKG NWAHSGFPEI AFGRYSDSLV QKGYKVARVE QTETPEMMEA 501 550 ENSP00000234420/1-1360 RCRKMAHISK YDRVVRREIC RIITKGTQTY SVLEGDPSEN YSKYLLSLKE ENSBTAP00000001867/1-1360 RCRKMAHISK YDRVVRREIC RIITKGTQTY SVLEGDPSEN YSKYLLSLKE bmy_19511T0/1-1338 RCRKMAHISK YDRVVRREIC RVITKGTQTY SVLEGDPSEN YSKYLLSLKE ENSTTRP00000007640/1-1353 RCRKMAHISK YDRVVRREIC RVITKGTQTY SVLEGDPSEN YSKYLLSLKE BACU019397/1-1360 RCRKMAHISK YDRVVRREIC RVITKGTQTY SVLEGDPSEN YSKYLLSLKE 551 600 ENSP00000234420/1-1360 KEEDSSGHTR AYGVCFVDTS LGKFFIGQFS DDRHCSRFRT LVAHYPPVQV ENSBTAP00000001867/1-1360 KEEESSGHTR VYGVCFVDTS LGRFFIGQFS DDRHCSRFRT LVAHYPPVQV bmy_19511T0/1-1338 KEDDSSGHAR VYGVCFVDTS LGKFFIGQFS DDRHCSRFRT LVAHYPPVQV ENSTTRP00000007640/1-1353 KEEDSSGHAR VYGVCFVDTS LGKFFIGQFS DDRHCSRFRT LVAHYPPVQV BACU019397/1-1360 KEDDSSGHAR VYGVCFVDTS LGKFFIGQFS DDRHCSRFRT LVAHYPPVQV 601 650 ENSP00000234420/1-1360 LFEKGNLSKE TKTILKSSLS CSLQEGLIPG SQFWDASKTL RTLLEEEYFR ENSBTAP00000001867/1-1360 LFEKGNLSMD TKMILKSSLS SSLQEGLIPG SQFWDAAKTL RTLLEEGYFI bmy_19511T0/1-1338 LFEKGNLSVE TKMILKGSLS SSLQEGLIPG SQFWDAAKTL RTLLEEGYFT ENSTTRP00000007640/1-1353 L-EKGNLSVA TKMILKGSLS SSLHEGLIPG SQ-WDAAKTL RTLLEEGYFT BACU019397/1-1360 LFEKGNLSVE TKMILKSSLS SSLQEGLIPG SQFWDAAKTL RTLLEEGYFT 651 700 ENSP00000234420/1-1360 EKLSDGIGVM LPQVLKGMTS ESDSIGLTPG EKSELALSAL GGCVFYLKKC ENSBTAP00000001867/1-1360 DKLNEDGGVM LPQVLKGMTS ESDSIGLTPG EKSELALSAL GGCVFYLKKC bmy_19511T0/1-1338 DKLNEDSGMM LPQVLKGMTS ESDSVGLTPG EKSELALSAL GGCVFYLKKC ENSTTRP00000007640/1-1353 DKLNEDSGVM LPQVLKGMTS ESDSVGLTPG EKSELALSAL GGCVFYLKKC BACU019397/1-1360 DKLNEDSGVM LPQVLKGMTS ESDSVGLTPG EKSELALSAL GGCVFYLKKC 701 750 ENSP00000234420/1-1360 LIDQELLSMA NFEEYIPLDS DTVSTTRSGA IFTKAYQRMV LDAVTLNNLE ENSBTAP00000001867/1-1360 LIDQELLSMA NFEEYVPLDS DMVHATRPGA VFAKANQRMV LDAVTLNNLE bmy_19511T0/1-1338 LIDQELLSMA NFEEYIPLDS DTVRATRPGA VFAKANQRMV LDAVTLNNLE ENSTTRP00000007640/1-1353 LIDQELLSMA NFEEYIPLDS DTVRAIGPGA VFAKASQRMV LDAVTLSNLE BACU019397/1-1360 LIDQELLSMA NFEEYIPLDS DTVRATRPGA VFAKANQRMV LDAVTLNNLE 751 800 ENSP00000234420/1-1360 IFLNGTNGST EGTLLERVDT CHTPFGKRLL KQWLCAPLCN HYAINDRLDA ENSBTAP00000001867/1-1360 IFLNGTNGST EGTLLEKIDT CHTPFGKRLL KQWLCAPLCN PHAINDRLDA bmy_19511T0/1-1338 IFLNGTNGST EGTLLEKIDT CHTPFGKRLL KQWLCAPLCN PYVISDRLDA ENSTTRP00000007640/1-1353 IFLNGTNGST EGTLLDKIDT CYTPFGKRLL KQWLCAPLCN PYVISDRLDA BACU019397/1-1360 IFLNGTNGST EGTLLEKIDT CHTPFGKRLL KQWLCAPLCN PYVISDRLDA 801 850 ENSP00000234420/1-1360 IEDLMVVPDK ISEVVELLKK LPDLERLLSK IHNVGSPLKS QNHPDSRAIM ENSBTAP00000001867/1-1360 IEDLMVVPDK ISEVVDLLKK LPDLERLLSK IHNVGSPLKS QNHPDSRAIM bmy_19511T0/1-1338 IEDLMVVPDK ISEVVDLLKK LPDLERLLSK IHNVGSPLKS QNHPDSRAIM ENSTTRP00000007640/1-1353 IEDLMVVPDK ISEVVDLLKK LPDLERLLSK IHNVGSPLKS QNHPDSRAIM BACU019397/1-1360 IEDLMVVPDR ISEVVDLLKK LPDLERLLSK IHNVGSPLKS QNHPDSRAIM 851 900 ENSP00000234420/1-1360 YEETTYSKKK IIDFLSALEG FKVMCKIIGI MEEVADGFKS KILKQVISLQ ENSBTAP00000001867/1-1360 YEETTYSKKK IIDFLSALEG FKVICKIIGI MEEVIDDFKS KILKQVLTLQ bmy_19511T0/1-1338 YEETTYSKKK IIDFLSALEG FKVLCKIIGV MEEVIDDFKS KILKQVLTLQ ENSTTRP00000007640/1-1353 YEETTYSKKK IIDFLSALEG FKVLCKIIGV MEEVIDDFKS KILKQVLTLQ BACU019397/1-1360 YEETTYSKKK IIDFLSALEG FKVLCKIIGV MEEVIDDFKS KILKQVLTLQ 901 950 ENSP00000234420/1-1360 TKNPEGRFPD LTVELNRWDT AFDHEKARKT GLITPKAGFD SDYDQALADI ENSBTAP00000001867/1-1360 TKSPEGRFPD LTSELNRWDT AFDHEKARKT GLITPKAGFD SDYDQALADI bmy_19511T0/1-1338 TKKPEGRFPD LTLELNRWDT AFDHEKARKT GLITPKAGFD SDYDQALADI ENSTTRP00000007640/1-1353 AKNPEGRFPD LTLELNRWDT AFDHEKARKT GLITPKAGFD SDYDQALADI BACU019397/1-1360 TKNPEGRFPD LTLELNRWDT AFDHEKARKT GLITPKAGFD SDYDQALADI 951 1000 ENSP00000234420/1-1360 RENEQSLLEY LEKQRNRIGC RTIVYWGIGR NRYQLEIPEN FTTRNLPEEY ENSBTAP00000001867/1-1360 RENEQSLLEY LEKQRSRIGC RTIVYWGIGR NRYQLEIPEN FITRNLPEEY bmy_19511T0/1-1338 RENEQSLLEY LEKQRSRIGC RTIVYWGIGR NRYQLEIPEN FITRNLPEEY ENSTTRP00000007640/1-1353 RENEQSLLEY LEKQRSRIGC RTIVYWGIGR NRYQLEIPEN FITRNLPEEY BACU019397/1-1360 RENEQSLLEY LEKQRSRIGC RTIVYWGIGR NRYQLEIPEN FITRNLPEEY 1001 1050 ENSP00000234420/1-1360 ELKSTKKGCK RYWTKTIEKK LANLINAEER RDVSLKDCMR RLFYNFDKNY ENSBTAP00000001867/1-1360 ELKSTKKGCK RYWTKTIEKK LGNLINAEER RDASLKDCMR RLFYNFDKNY bmy_19511T0/1-1338 ELKSTKKGCK RYWTKTIEKK LANLINAEER RDVSLKDCMR RLFYNFDKNY ENSTTRP00000007640/1-1353 ELKSTKKGCK RYWTKTIEKK LANLINAEER RDVSLKDCMR RLFYNFDKNY BACU019397/1-1360 ELKSTKKGCK RYWTKTIEKK LANLINAEER RDVSLKDCMR RLFYNFDKNY 1051 1100 ENSP00000234420/1-1360 KDWQSAVECI AVLDVLLCLA NYSRGGDGPM CRPVILLP-E DTPPFLELKG ENSBTAP00000001867/1-1360 KDWQAAVECI AVLDVLLCLT NYSRGGDGPM CRPIILLPEE DTPPFLDLKG bmy_19511T0/1-1338 KDWQAAVECI AVLDVLLCLA NYSRGGDGPM CRPVILLPEE DTPPFLDLKG ENSTTRP00000007640/1-1353 KDWQAAVECI AVLDVLLCLA NYSRGGDGPM CRPVILLPGE DTPPFLDLKG BACU019397/1-1360 KDWQAAVECI AVLDVLLCLA NYSRGGDGPM CRPVILLPEE DTPPFLDLKG 1101 1150 ENSP00000234420/1-1360 SRHPCITKTF FGDDFIPNDI LIGCEEEEQE NGKAYCVLVT GPNMGGKSTL ENSBTAP00000001867/1-1360 SRHPCITKTF FGDDFIPNDI LIGCEEEEEE NGKAYCVLVT GPNMGGKSTL bmy_19511T0/1-1338 SRHPCITKTF FGDDFIPNDI LIGCEEEE-E NGKAYCVLVT GPNMGGKSTL ENSTTRP00000007640/1-1353 SRHPCITKTF FGDDFIPNDI LIGCEEEE-E NGKAYCVLVT GPNMGGKSTL BACU019397/1-1360 SRHPCITKTF FGDDFIPNDI LIGCEEEE-E NGKAYCVLVT GPNMGGKSTL 1151 1200 ENSP00000234420/1-1360 MRQAGLLAVM AQMGCYVPAE VCRLTPIDRV FTRLGASDRI MSGESTFFVE ENSBTAP00000001867/1-1360 MRQAGLLAIM AQMGCYVPAE VCRLTPIDRV FTRLGASDRI MSGESTFFVE bmy_19511T0/1-1338 MRQAGLLVVM AQMGCYVPAE VCRLTPIDRV FTRLGASDRI MSGESTFFVE ENSTTRP00000007640/1-1353 MRQAGLLVVM AQMGCYVPAE VCRLTPIDRV FTRLGASDRI MSGESTFFVE BACU019397/1-1360 MRQAGLLVVM AQMGCYVPAE VCRLTPIDRV FTRLGASDRI MSGESTFFVE 1201 1250 ENSP00000234420/1-1360 LSETASILMH ATAHSLVLVD ELGRGTATFD GTAIANAVVK ELAETIKCRT ENSBTAP00000001867/1-1360 LSETASILTH ATAHSLVLVD ELGRGTATFD GTAIANAVVK ELAENIKCRT bmy_19511T0/1-1338 LSETASILTH ATAHSLVLVD ELGRGTATFD GTAIANAVVK ELAENIKCRT ENSTTRP00000007640/1-1353 LSETASILKH ATAHSLVLVD ELGRGTATFD GTAIANAVVK ELAENIKCRT BACU019397/1-1360 LSETASILTH ATAHSLVLVD ELGRGTATFD GTAIANAVVK ELAENIKCRT 1251 1300 ENSP00000234420/1-1360 LFSTHYHSLV EDYSQNVAVR LGHMACMVEN ECEDPSQETI TFLYKFIKGA ENSBTAP00000001867/1-1360 LFSTHYHSLV EDYSQNVAVR LGHMACMVEN ECEDPSQETI TFLYKFIKGA bmy_19511T0/1-1338 LFSTHYHSLV EDYSQNVAVR LGHMACMVEN ECEDPSQETI TFLYKFIKGA ENSTTRP00000007640/1-1353 LFSTHYHSLV EDYSQNVAVR LGHMACMVEN ECDDPSQETI TFLYKFIKGA BACU019397/1-1360 LFSTHYHSLV EDYSQNVAVR LGHMACMVEN ECEDPSQETI TFLYKFIKGA 1301 1350 ENSP00000234420/1-1360 CPKSYGFNAA RLANLPEEVI QKGHRKAREF EKMNQSLRLF REVCLASERS ENSBTAP00000001867/1-1360 CPKSYGFNAA RLANLPEEVI QKGHRKAREF EKMTQSLRLF REVCLASERS bmy_19511T0/1-1338 CPKSYGFNAA RLANLPEEVI QKGHRKAREF EKMTQSLRLF REVCLASERS ENSTTRP00000007640/1-1353 CPK---YLYA ALA-LPEEVI --GHRKAREF EKMTQSLRLF REVCLASESS BACU019397/1-1360 CPKSYGFNAA RLANLPEEVI QKGHRKAREF EKMTQSLRLF REVCLASERS 1351 1400 ENSP00000234420/1-1360 TVDAEAVHKL LTLIKEL ENSBTAP00000001867/1-1360 TVDADAVHKL LTLIEEL bmy_19511T0/1-1338 TVDAEAVHKL LTLIEEL ENSTTRP00000007640/1-1353 TVDAEAVRKL LTLIEEL BACU019397/1-1360 TVDAEAVHKL LTLIEEL