KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:15:40 2014 Check: 00 .. Name: ENSTTRP00000007666/1-931 Len: 931 Check: 7503 Weight: 1.00 Name: ENSBTAP00000001868/1-707 Len: 931 Check: 569 Weight: 1.00 Name: ENSP00000384823/1-927 Len: 931 Check: 3755 Weight: 1.00 Name: bmy_19512T0/1-927 Len: 931 Check: 3981 Weight: 1.00 Name: BACU013885/1-769 Len: 931 Check: 2540 Weight: 1.00 // 1 50 ENSTTRP00000007666/1-931 MNSVRAANRR PRRVSRPRPV QQQQQQQQPP QQPPPQPPQQ QPPQQQPPPP ENSBTAP00000001868/1-707 MNSVRAANRR PRRVSRPRPV --QQQQQQPP QQPPPQPPQQ QPPQQQPPPP ENSP00000384823/1-927 MNSVRAANRR PRRVSRPRPV --QQQQQQPP QQPPPQPPQQ QPPQQQPPPP bmy_19512T0/1-927 MNSVRAANRR PRRVSRPRPV -QQQQQQQPP QQPPPQPPQQ QPPQQQPPPP BACU013885/1-769 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000007666/1-931 PQQQQQQQQP PPPPPPPPPL PQERNNAGER DDDVPADMVA EESGPGAQNS ENSBTAP00000001868/1-707 P---QQQQQP PPPPPPPPPL PQERNNAGER DDDVPADMVA EESGPGAQNS ENSP00000384823/1-927 P-QQQQQQQP PPPPPPPPPL PQERNNVGER DDDVPADMVA EESGPGAQNS bmy_19512T0/1-927 P---QQQQQP PPPPPPPPPL PQERNNAGER DDDVPADMVA EESGPGAQNS BACU013885/1-769 ---------- ---------- ---------- -DDVPADMVA EESGPGAQNS 101 150 ENSTTRP00000007666/1-931 PYQLRRKTLL PKRTACPTKS SMEGASTSTT ENFFGHRAKR ARVSGKSQDL ENSBTAP00000001868/1-707 PYQLRRKTLL PKRTACPTKS SMEGASTSTT ENFFGHRAKR ARVSGKSQDL ENSP00000384823/1-927 PYQLRRKTLL PKRTACPTKN SMEGASTSTT EN-FGHRAKR ARVSGKSQDL bmy_19512T0/1-927 PYQLRRKTLL PKRTACPTKS SMEGASTSTT ENFFGHRAKR ARVSGKSQDL BACU013885/1-769 PYQLRRKTLL PKRTACPTKS SME------- ---------- ---------- 151 200 ENSTTRP00000007666/1-931 SAAPAEQYLQ EKLPDEVVLK IFSYLLEQDL CRAACVCKRF SELANDPILW ENSBTAP00000001868/1-707 SAAPAEQYLQ EKLPDEVVLK IFSYLLEQDL CRAACVCKRF SELANDPILW ENSP00000384823/1-927 SAAPAEQYLQ EKLPDEVVLK IFSYLLEQDL CRAACVCKRF SELANDPILW bmy_19512T0/1-927 SAAPAEQYLQ EKLPDEVVLK IFSYLLEQDL CRAACVCKRF SELANDPILW BACU013885/1-769 ---------- EKLPDEVVLK IFSYLLEQDL CRAACVCKRF SELANDPILW 201 250 ENSTTRP00000007666/1-931 KRLYMEVFEY TRPMMHPEPG KFYQINPEEY EHPNPWKESF QQLYKGAHVK ENSBTAP00000001868/1-707 KRLYMEVFEY TRPMMHPEPG KFYQINPEEY EHPNPWKESF QQLYKGAHVK ENSP00000384823/1-927 KRLYMEVFEY TRPMMHPEPG KFYQINPEEY EHPNPWKESF QQLYKGAHVK bmy_19512T0/1-927 KRLYMEVFEY TRPMMHPEPG KFYQINPEEY EHPNPWKESF QQLYKGAHVK BACU013885/1-769 KRLYMEVFEY TRPMMHPEPG KFYQINPEEY EHPNPWKESF QQLYKGAHVK 251 300 ENSTTRP00000007666/1-931 PGFAEHFYSN PARYKGRENM LYYDTIEDAL GGVQEAHFDG LIFVHSGIYT ENSBTAP00000001868/1-707 PGFAEHFYSN PARYKGRENM LYYDTIEDAL GGVQEAHFDG LIFVHSGIYT ENSP00000384823/1-927 PGFAEHFYSN PARYKGRENM LYYDTIEDAL GGVQEAHFDG LIFVHSGIYT bmy_19512T0/1-927 PGFAEHFYSN PARYKGRENM LYYDTIEDAL GGVQEAHFDG LIFVHSGIYT BACU013885/1-769 PGFAEHFYSN PARYKGRENM LYYDTIEDAL GGVQEAHFDG LIFVHSGIYT 301 350 ENSTTRP00000007666/1-931 DEWIYIESPI TMIGAAPGKV ADKVIIENTR DSTFVFMEGS EDAYVGYMTI ENSBTAP00000001868/1-707 DEWIYIESPI TMIGAAPGKV ADKVIIENTR DSTFVFMEGS EDAYVGYMTI ENSP00000384823/1-927 DEWIYIESPI TMIGAAPGKV ADKVIIENTR DSTFVFMEGS EDAYVGYMTI bmy_19512T0/1-927 DEWIYIESPI TMIGAAPGKV ADKVIIENTR DSTFVFMEGS EDAYVGYMTI BACU013885/1-769 DEWIYIESPI TMIGAAPGKV ADKVIIENTR DSTFVFMEGS EDAYVGYMTI 351 400 ENSTTRP00000007666/1-931 RFNPDDKSAQ HHNAHHCLEI TVNCSPIIDH CIIRSTCTVG SAVCVSGQGA ENSBTAP00000001868/1-707 RFNPDDKSAQ HHNAHHCLEI TVNCSPIIDH CIIRSTCTVG SAVCVSGQGA ENSP00000384823/1-927 RFNPDDKSAQ HHNAHHCLEI TVNCSPIIDH CIIRSTCTVG SAVCVSGQGA bmy_19512T0/1-927 RFNPDDKSAQ HHNAHHCLEI TVNCSPIIDH CIIRSTCTVG SAVCVSGQGA BACU013885/1-769 RFNPDDKSAQ HHNAHHCLEI TVNCSPIIDH CIIRSTCTVG SAVCVSGQGA 401 450 ENSTTRP00000007666/1-931 CPTIKHCNIS DCENVGLYIT DHAQGIYEDN EISNNALAGI WVKNHGNPII ENSBTAP00000001868/1-707 CPTIKHCNIS DCENVGLYIT DHAQGIYEDN EISNNALAGI WVKNHGNPII ENSP00000384823/1-927 CPTIKHCNIS DCENVGLYIT DHAQGIYEDN EISNNALAGI WVKNHGNPII bmy_19512T0/1-927 CPTIKHCNIS DCENVGLYIT DHAQGIYEDN EISNNALAGI WVKNHGNPII BACU013885/1-769 CPTIKHCNIS DCENVGLYIT DHAQGIYEDN EISNNALAGI WVKNHGNPII 451 500 ENSTTRP00000007666/1-931 RRNHIHHGRD VGVFTFDHGM GYFESCNIHR NRIAGFEVKA YANPTVVRCE ENSBTAP00000001868/1-707 RRNHIHHGRD VGVFTFDHGM GYFESCNIHR NRIAGFEVKA YANPTVVRCE ENSP00000384823/1-927 RRNHIHHGRD VGVFTFDHGM GYFESCNIHR NRIAGFEVKA YANPTVVRCE bmy_19512T0/1-927 RRNHIHHGRD VGVFTFDHGM GYFESCNIHR NRIAGFEVKA YANPTVVRCE BACU013885/1-769 RRNHIHHGRD VGVFTFDHGM GYFESCNIHR NRIAGFEVKA YANPTVVRCE 501 550 ENSTTRP00000007666/1-931 IHHGQTGGIY VHEKGRGQFI ENKIYANNFA GVWITSNSDP TIXXXXXXXX ENSBTAP00000001868/1-707 IHHGQTGGIY VHEKGRGQFI ENKIYANNFA GVWITSNSDP TIRGNSIFNG ENSP00000384823/1-927 IHHGQTGGIY VHEKGRGQFI ENKIYANNFA GVWITSNSDP TIRGNSIFNG bmy_19512T0/1-927 IHHGQTGGIY VHEKGRGQFI ENKIYANNFA GVWITSNSDP TIRGNSIFNG BACU013885/1-769 IHHGQTGGIY VHEKGRGQFI ENKIYANNFA GVWITSNSDP TIRGNSIFNG 551 600 ENSTTRP00000007666/1-931 XXXXXXXXXX XXXXXXXXXX XXNALAGIQI RTNSCPIVRH NKIHDGQHGG ENSBTAP00000001868/1-707 NQGGVYIFGD GRGLIEGNDI YGNALAGIQI RTNSCPIVRH NKIHDGQHGG ENSP00000384823/1-927 NQGGVYIFGD GRGLIEGNDI YGNALAGIQI RTNSCPIVRH NKIHDGQHGG bmy_19512T0/1-927 NQGGVYIFGD GRGLIEGNDI YGNALAGIQI RTNSCPIVRH NKIHDGQHGG BACU013885/1-769 NQGGVYIFGD GRGLIEGNDI YGNALAGIQI RTNSCPIVRH NKIHDGQHGG 601 650 ENSTTRP00000007666/1-931 IYVHEKGQGV IEENEVYSNT LAGVWVTTGS TPVLRRNRIH SGKQVGVYFY ENSBTAP00000001868/1-707 IYVHEKGQGV IEENEVYSNT LAGVWVTTGS TPVLRRNRIH SGKQVGVYFY ENSP00000384823/1-927 IYVHEKGQGV IEENEVYSNT LAGVWVTTGS TPVLRRNRIH SGKQVGVYFY bmy_19512T0/1-927 IYVHEKGQGV IEENEVYSNT LAGVWVTTGS TPVLRRNRIH SGKQVGVYFY BACU013885/1-769 IYVHEKGQGV IEENEVYSNT LAGVWVTTGS TPVLRRNRIH SGKQVGVYFY 651 700 ENSTTRP00000007666/1-931 DNGHGVLEDN DIYNHMYSGV QIRTGSNPKI RRNKIWGGQN GGILVYNSGL ENSBTAP00000001868/1-707 DNGHGVLEDN DIYNHMYSGV QIRTGSNPKI RRNKIWGGQN GGILVYNSGV ENSP00000384823/1-927 DNGHGVLEDN DIYNHMYSGV QIRTGSNPKI RRNKIWGGQN GGILVYNSGL bmy_19512T0/1-927 DNGHGVLEDN DIYNHMYSGV QIRTGSNPKI RRNKIWGGQN GGILVYNSGL BACU013885/1-769 DNGHGVLEDN DIYNHMYSGV QIRTGSNPKI RRNKIWGGQN GGILVYNSGL 701 750 ENSTTRP00000007666/1-931 GCIEDNEIFD NAMAGVWIKT DSNPTLRRNK IHDGRDGGIC IFNGGRGLLE ENSBTAP00000001868/1-707 ICTH------ ---------- --VPV----- ---------C TF-------- ENSP00000384823/1-927 GCIEDNEIFD NAMAGVWIKT DSNPTLRRNK IHDGRDGGIC IFNGGRGLLE bmy_19512T0/1-927 GCIEDNEIFD NAMAGVWIKT DSNPTLRRNK IHDGRDGGIC IFNGGRGLLE BACU013885/1-769 GCIEDNEIFD NAMAGVWIKT DSNPTLRRNK IHDGRDGGIC IFNGGRGLLE 751 800 ENSTTRP00000007666/1-931 ENDIFRNAQA GVLISTNSHP VLRKNRIFDG FAAGIEITNH ATATLEGNQI ENSBTAP00000001868/1-707 ---------- ---------- ---------- ---------- ---------- ENSP00000384823/1-927 ENDIFRNAQA GVLISTNSHP ILRKNRIFDG FAAGIEITNH ATATLEGNQI bmy_19512T0/1-927 ENDIFRNAQA GVLISTNSHP VLRKNRIFDG FAAGIEITNH ATATLEGNQI BACU013885/1-769 ENDIFRNAQA GVLISTNSHP VLRKNRIFDG FAAGIEITNH ATATLEGNQI 801 850 ENSTTRP00000007666/1-931 FNNRFGGLFL ASGVNVTMKD NKIMNNQDAI EKAVSRGQCL YKISSYTSYP ENSBTAP00000001868/1-707 --------FL ---------- ---------- ---------- ---------- ENSP00000384823/1-927 FNNRFGGLFL ASGVNVTMKD NKIMNNQDAI EKAVSRGQCL YKISSYTSYP bmy_19512T0/1-927 FNNRFGGLFL ASGVNVTMKD NKIMNNQDAI EKAVSRGQCL YKISSYTSYP BACU013885/1-769 FNNRFGGLFL ASGVNVTMK- ---------- ---------- ---------- 851 900 ENSTTRP00000007666/1-931 MHDFYRCHTC NTTDRNAICV NCIKKCHQGH DVEFIRHDRF FCDCGAGTLS ENSBTAP00000001868/1-707 ---------- ---------- ---------- ---------- ---------- ENSP00000384823/1-927 MHDFYRCHTC NTTDRNAICV NCIKKCHQGH DVEFIRHDRF FCDCGAGTLS bmy_19512T0/1-927 MHDFYRCHTC NTTDRNAICV NCIKKCHQGH DVEFIRHDRF FCDCGAGTLS BACU013885/1-769 ---------- ---DRNAICV NCIKKCHQGH DVEFIRHDRF FCDCGAGTLS 901 950 ENSTTRP00000007666/1-931 NPCTLAGEPT HDTDTLYDSA PPIESNTLQH N ENSBTAP00000001868/1-707 ---------- ---------- ---------- - ENSP00000384823/1-927 NPCTLAGEPT HDTDTLYDSA PPIESNTLQH N bmy_19512T0/1-927 NPCTLAGEPT HDTDTLYDSA PPIESNTLQH N BACU013885/1-769 NPCTLAGEPT HDTDTLYDSA PPIESNTLQH N